Wall clock time and date at job start Tue Mar 31 2020 07:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46995 * 2 1 4 4 C 1.50692 * 109.47230 * 239.99719 * 2 1 3 5 5 H 1.08002 * 120.00154 * 239.99835 * 4 2 1 6 6 C 1.37883 * 120.00112 * 60.00142 * 4 2 1 7 7 N 1.31512 * 119.99821 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00061 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47440 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.47280 * 119.99740 * 8 6 4 11 11 H 1.48498 * 109.47270 * 239.99689 * 8 6 4 12 12 N 1.46502 * 109.46911 * 119.99465 * 2 1 3 13 13 C 1.34775 * 120.00135 * 274.99896 * 12 2 1 14 14 O 1.21276 * 120.00134 * 0.02562 * 13 12 2 15 15 C 1.50701 * 120.00005 * 180.02562 * 13 12 2 16 16 H 1.09007 * 109.49052 * 300.06562 * 15 13 12 17 17 C 1.53037 * 109.49860 * 60.16239 * 15 13 12 18 18 C 1.53041 * 109.53606 * 181.32146 * 17 15 13 19 19 C 1.53624 * 109.23819 * 298.50541 * 18 17 15 20 20 N 1.46921 * 108.54016 * 54.86424 * 19 18 17 21 21 C 1.34777 * 120.63392 * 126.36873 * 20 19 18 22 22 O 1.21283 * 120.00463 * 179.71854 * 21 20 19 23 23 C 1.50700 * 119.99675 * 359.43977 * 21 20 19 24 24 C 1.53002 * 117.49942 * 249.02519 * 23 21 20 25 25 C 1.53005 * 117.50073 * 180.36469 * 23 21 20 26 26 C 1.46924 * 118.73733 * 306.08443 * 20 19 18 27 27 H 1.09000 * 109.46995 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47180 * 300.00694 * 1 2 3 29 29 H 1.08998 * 109.47222 * 60.00299 * 1 2 3 30 30 H 0.97001 * 119.99821 * 180.02562 * 7 6 4 31 31 H 0.96999 * 119.99989 * 95.00742 * 12 2 1 32 32 H 1.09003 * 109.45789 * 301.34071 * 17 15 13 33 33 H 1.08996 * 109.46057 * 61.31041 * 17 15 13 34 34 H 1.08990 * 109.50248 * 58.58757 * 18 17 15 35 35 H 1.09008 * 109.49515 * 178.68342 * 18 17 15 36 36 H 1.09000 * 109.74309 * 295.12144 * 19 18 17 37 37 H 1.09000 * 109.66216 * 174.55318 * 19 18 17 38 38 H 1.09001 * 115.55204 * 34.69144 * 23 21 20 39 39 H 1.09008 * 117.49817 * 359.97438 * 24 23 21 40 40 H 1.08992 * 117.50462 * 145.01758 * 24 23 21 41 41 H 1.08994 * 117.50196 * 214.97848 * 25 23 21 42 42 H 1.09009 * 117.49229 * 359.97438 * 25 23 21 43 43 H 1.09006 * 109.58932 * 173.64787 * 26 20 19 44 44 H 1.08998 * 109.59450 * 293.93467 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1205 -4.0078 9 1 3.1465 -2.2872 -3.6036 10 1 1.1661 -1.5869 -4.8159 11 1 3.1466 -0.1876 -4.8164 12 7 2.0183 -0.6905 1.1963 13 6 2.1470 -0.0181 2.3572 14 8 1.8582 1.1585 2.4117 15 6 2.6499 -0.7283 3.5876 16 1 1.9785 -1.5514 3.8323 17 6 4.0546 -1.2752 3.3235 18 6 4.5529 -2.0250 4.5611 19 6 4.6287 -1.0509 5.7466 20 7 3.3143 -0.4163 5.9146 21 6 2.6852 -0.4449 7.1062 22 8 1.6027 0.0870 7.2335 23 6 3.3240 -1.1434 8.2789 24 6 2.6673 -2.4326 8.7766 25 6 2.5560 -1.1484 9.6022 26 6 2.7015 0.2556 4.7606 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.7082 1.1607 -3.4845 31 1 2.2491 -1.6316 1.1528 32 1 4.0249 -1.9568 2.4734 33 1 4.7304 -0.4490 3.1030 34 1 3.8642 -2.8361 4.7969 35 1 5.5438 -2.4342 4.3640 36 1 5.3806 -0.2871 5.5481 37 1 4.8897 -1.5964 6.6534 38 1 4.4111 -1.0809 8.3282 39 1 1.7730 -2.7754 8.2561 40 1 3.3223 -3.2180 9.1536 41 1 3.1378 -1.0895 10.5220 42 1 1.5888 -0.6461 9.6246 43 1 1.6904 0.5723 5.0166 44 1 3.2980 1.1252 4.4849 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194645117.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:11 Heat of formation + Delta-G solvation = -58.503793 kcal Electronic energy + Delta-G solvation = -24062.277313 eV Core-core repulsion = 20593.847048 eV Total energy + Delta-G solvation = -3468.430265 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.58506 -39.17561 -37.35224 -36.17199 -34.81374 -33.19289 -32.21911 -31.29589 -28.83070 -26.21887 -25.27653 -24.70609 -23.12047 -22.71627 -21.69948 -20.48552 -19.29412 -18.86410 -17.91519 -17.01115 -16.19016 -15.53846 -15.45120 -15.37941 -15.06158 -14.57550 -14.44308 -14.12219 -14.00473 -13.29706 -13.23341 -12.95456 -12.66330 -12.55906 -12.36894 -11.85958 -11.70593 -11.49544 -11.27942 -11.11016 -11.04779 -10.94513 -10.87720 -10.77319 -10.75377 -10.57812 -10.30620 -10.24726 -9.88388 -9.05726 -9.03062 -8.68685 -8.56084 -7.91349 -6.13266 -4.22687 2.35390 2.77841 3.22324 3.29939 3.32264 3.35985 3.58771 4.08323 4.22572 4.35724 4.46010 4.57727 4.62399 4.72396 4.80765 4.83366 4.93948 5.18975 5.19481 5.28206 5.29388 5.37799 5.45988 5.62801 5.63707 5.65579 5.71402 5.83859 5.87098 5.93963 6.13983 6.22156 6.41168 6.83068 6.97835 7.15653 7.28817 7.45949 7.55443 7.68634 7.91109 8.07956 8.14772 8.65524 8.77035 9.11452 9.44990 10.92730 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032342 B = 0.003124 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.541063 B = 8960.506761 C = 9420.535983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.706 5.706 13 C 0.508 3.492 14 O -0.553 6.553 15 C -0.122 4.122 16 H 0.094 0.906 17 C -0.112 4.112 18 C -0.132 4.132 19 C 0.104 3.896 20 N -0.608 5.608 21 C 0.542 3.458 22 O -0.539 6.539 23 C -0.195 4.195 24 C -0.152 4.152 25 C -0.149 4.149 26 C 0.133 3.867 27 H 0.026 0.974 28 H 0.015 0.985 29 H 0.090 0.910 30 H 0.264 0.736 31 H 0.388 0.612 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.124 0.876 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.098 0.902 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.080 -8.848 19.597 23.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.354 5.354 13 C 0.292 3.708 14 O -0.432 6.432 15 C -0.145 4.145 16 H 0.112 0.888 17 C -0.150 4.150 18 C -0.170 4.170 19 C -0.019 4.019 20 N -0.341 5.341 21 C 0.331 3.669 22 O -0.416 6.416 23 C -0.216 4.216 24 C -0.190 4.190 25 C -0.187 4.187 26 C 0.011 3.989 27 H 0.045 0.955 28 H 0.034 0.966 29 H 0.109 0.891 30 H 0.074 0.926 31 H 0.220 0.780 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.142 0.858 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.126 0.874 43 H 0.116 0.884 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.195 -7.577 19.511 22.478 hybrid contribution 0.543 -0.969 -1.084 1.552 sum 8.738 -8.547 18.427 22.113 Atomic orbital electron populations 1.22082 0.98500 0.99097 1.00951 1.18747 0.91022 0.93989 0.80017 0.93369 1.21245 1.32389 1.13172 0.90324 0.92068 1.24899 0.94832 0.94963 0.99085 1.69916 1.35846 1.22487 1.23774 0.86397 0.78600 0.79502 0.82600 1.19755 1.20874 1.20883 1.46515 1.64866 1.13484 1.10492 1.20161 0.78685 0.87388 0.84549 1.90670 1.51392 1.16091 1.85085 1.21667 0.98521 0.99597 0.94667 0.88829 1.21524 0.94892 1.00572 0.98021 1.21993 1.02204 0.98096 0.94723 1.21918 0.84373 0.96141 0.99424 1.48062 1.20211 1.55733 1.10080 1.19666 0.84737 0.79524 0.83023 1.90709 1.21232 1.46142 1.83548 1.22220 1.00037 1.03865 0.95448 1.22944 1.02658 0.90499 1.02851 1.22974 1.02522 1.00336 0.92833 1.21367 1.00959 0.93680 0.82909 0.95508 0.96622 0.89140 0.92617 0.77978 0.90575 0.90963 0.91196 0.90254 0.91071 0.89509 0.85806 0.88218 0.87793 0.87966 0.87386 0.88360 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.26 37.16 0.34 -3.39 16 2 C 0.26 6.72 2.56 -69.08 -0.18 6.54 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 4 C -0.53 -14.03 8.73 -34.44 -0.30 -14.33 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.93 11.32 55.43 0.63 -24.31 16 8 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 9 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 12 N -0.71 -14.51 4.96 -54.93 -0.27 -14.79 16 13 C 0.51 10.03 7.12 -10.99 -0.08 9.95 16 14 O -0.55 -13.27 15.58 5.56 0.09 -13.18 16 15 C -0.12 -1.76 2.68 -91.65 -0.25 -2.01 16 16 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 17 C -0.11 -1.27 5.07 -26.69 -0.14 -1.40 16 18 C -0.13 -1.08 6.10 -26.39 -0.16 -1.24 16 19 C 0.10 0.86 6.33 -3.49 -0.02 0.83 16 20 N -0.61 -7.29 2.97 -172.51 -0.51 -7.81 16 21 C 0.54 7.06 7.48 -10.98 -0.08 6.98 16 22 O -0.54 -9.30 15.67 5.55 0.09 -9.22 16 23 C -0.19 -1.71 4.96 -91.77 -0.46 -2.16 16 24 C -0.15 -1.12 10.24 -26.69 -0.27 -1.39 16 25 C -0.15 -1.21 10.05 -26.69 -0.27 -1.48 16 26 C 0.13 1.99 5.06 -3.71 -0.02 1.97 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.39 6.86 7.95 -40.82 -0.32 6.54 16 32 H 0.08 0.84 7.54 -51.93 -0.39 0.45 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.51 5.66 -51.93 -0.29 0.22 16 38 H 0.12 0.78 6.81 -51.93 -0.35 0.43 16 39 H 0.10 0.85 8.14 -51.92 -0.42 0.42 16 40 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.11 1.08 7.67 -51.92 -0.40 0.69 16 43 H 0.10 1.74 7.01 -51.93 -0.36 1.37 16 44 H 0.08 1.23 7.96 -51.93 -0.41 0.81 16 LS Contribution 354.01 15.07 5.33 5.33 Total: -1.00 -32.95 354.01 -8.65 -41.61 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -7.02 Total: 6.31 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -1.97 Total: 0.54 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: -0.16 Total: -46.90 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: 0.17 Total: -22.40 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.95 -8.65 -41.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194645117.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.897 kcal (2) G-P(sol) polarization free energy of solvation -32.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds