Wall clock time and date at job start Tue Mar 31 2020 07:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46995 * 2 1 4 4 C 1.50692 * 109.47230 * 239.99719 * 2 1 3 5 5 H 1.08002 * 120.00154 * 239.99835 * 4 2 1 6 6 C 1.37883 * 120.00112 * 60.00142 * 4 2 1 7 7 N 1.31512 * 119.99821 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00061 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47440 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.47280 * 119.99740 * 8 6 4 11 11 H 1.48498 * 109.47270 * 239.99689 * 8 6 4 12 12 N 1.46502 * 109.46911 * 119.99465 * 2 1 3 13 13 C 1.34775 * 120.00135 * 274.99896 * 12 2 1 14 14 O 1.21276 * 120.00134 * 0.02562 * 13 12 2 15 15 C 1.50701 * 120.00005 * 180.02562 * 13 12 2 16 16 H 1.09007 * 109.49052 * 300.06562 * 15 13 12 17 17 C 1.53037 * 109.49860 * 60.16239 * 15 13 12 18 18 C 1.53041 * 109.53606 * 181.32146 * 17 15 13 19 19 C 1.53624 * 109.23819 * 298.50541 * 18 17 15 20 20 N 1.46921 * 108.54016 * 54.86424 * 19 18 17 21 21 C 1.34777 * 120.63392 * 126.36873 * 20 19 18 22 22 O 1.21283 * 120.00463 * 179.71854 * 21 20 19 23 23 C 1.50700 * 119.99675 * 359.43977 * 21 20 19 24 24 C 1.53002 * 117.49942 * 249.02519 * 23 21 20 25 25 C 1.53005 * 117.50073 * 180.36469 * 23 21 20 26 26 C 1.46924 * 118.73733 * 306.08443 * 20 19 18 27 27 H 1.09000 * 109.46995 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47180 * 300.00694 * 1 2 3 29 29 H 1.08998 * 109.47222 * 60.00299 * 1 2 3 30 30 H 0.97001 * 119.99821 * 180.02562 * 7 6 4 31 31 H 0.96999 * 119.99989 * 95.00742 * 12 2 1 32 32 H 1.09003 * 109.45789 * 301.34071 * 17 15 13 33 33 H 1.08996 * 109.46057 * 61.31041 * 17 15 13 34 34 H 1.08990 * 109.50248 * 58.58757 * 18 17 15 35 35 H 1.09008 * 109.49515 * 178.68342 * 18 17 15 36 36 H 1.09000 * 109.74309 * 295.12144 * 19 18 17 37 37 H 1.09000 * 109.66216 * 174.55318 * 19 18 17 38 38 H 1.09001 * 115.55204 * 34.69144 * 23 21 20 39 39 H 1.09008 * 117.49817 * 359.97438 * 24 23 21 40 40 H 1.08992 * 117.50462 * 145.01758 * 24 23 21 41 41 H 1.08994 * 117.50196 * 214.97848 * 25 23 21 42 42 H 1.09009 * 117.49229 * 359.97438 * 25 23 21 43 43 H 1.09006 * 109.58932 * 173.64787 * 26 20 19 44 44 H 1.08998 * 109.59450 * 293.93467 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1205 -4.0078 9 1 3.1465 -2.2872 -3.6036 10 1 1.1661 -1.5869 -4.8159 11 1 3.1466 -0.1876 -4.8164 12 7 2.0183 -0.6905 1.1963 13 6 2.1470 -0.0181 2.3572 14 8 1.8582 1.1585 2.4117 15 6 2.6499 -0.7283 3.5876 16 1 1.9785 -1.5514 3.8323 17 6 4.0546 -1.2752 3.3235 18 6 4.5529 -2.0250 4.5611 19 6 4.6287 -1.0509 5.7466 20 7 3.3143 -0.4163 5.9146 21 6 2.6852 -0.4449 7.1062 22 8 1.6027 0.0870 7.2335 23 6 3.3240 -1.1434 8.2789 24 6 2.6673 -2.4326 8.7766 25 6 2.5560 -1.1484 9.6022 26 6 2.7015 0.2556 4.7606 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.7082 1.1607 -3.4845 31 1 2.2491 -1.6316 1.1528 32 1 4.0249 -1.9568 2.4734 33 1 4.7304 -0.4490 3.1030 34 1 3.8642 -2.8361 4.7969 35 1 5.5438 -2.4342 4.3640 36 1 5.3806 -0.2871 5.5481 37 1 4.8897 -1.5964 6.6534 38 1 4.4111 -1.0809 8.3282 39 1 1.7730 -2.7754 8.2561 40 1 3.3223 -3.2180 9.1536 41 1 3.1378 -1.0895 10.5220 42 1 1.5888 -0.6461 9.6246 43 1 1.6904 0.5723 5.0166 44 1 3.2980 1.1252 4.4849 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194645117.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:10 Heat of formation + Delta-G solvation = -80.762570 kcal Electronic energy + Delta-G solvation = -24063.242526 eV Core-core repulsion = 20593.847048 eV Total energy + Delta-G solvation = -3469.395478 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.65822 -40.62093 -38.43596 -36.98832 -36.74270 -34.57788 -33.87685 -32.30756 -30.72524 -27.38728 -27.18534 -25.75231 -24.13211 -23.29344 -23.01444 -21.94347 -20.95224 -19.76606 -19.06456 -18.46969 -17.57005 -17.21421 -16.82514 -16.35869 -16.27197 -16.10253 -15.38620 -15.29973 -15.11587 -14.71887 -14.55635 -14.29481 -14.00771 -13.72437 -13.65019 -13.43664 -12.99426 -12.89347 -12.76824 -12.53962 -12.42412 -12.30775 -12.12747 -12.08217 -11.96881 -11.66390 -11.49557 -11.36610 -11.11412 -10.91024 -10.68486 -10.56585 -9.80467 -9.71903 -8.18508 -6.36440 1.42196 1.44480 1.45117 1.57469 1.74755 1.80606 2.36104 2.65061 2.92778 3.12162 3.42690 3.62040 3.78498 3.82093 3.87500 3.99908 4.06110 4.13584 4.20129 4.28362 4.51358 4.62742 4.72137 4.73477 4.77156 4.79718 4.88150 4.89558 4.93998 5.05554 5.06787 5.09809 5.12472 5.25486 5.37055 5.39980 5.45629 5.59441 5.65367 5.87486 6.07365 6.37288 6.71665 6.91517 7.10517 7.30880 7.51756 8.88260 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032342 B = 0.003124 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.541063 B = 8960.506761 C = 9420.535983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.270 3.730 3 H -0.003 1.003 4 C -0.543 4.543 5 H 0.077 0.923 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.975 3.025 9 H -0.256 1.256 10 H -0.280 1.280 11 H -0.284 1.284 12 N -0.699 5.699 13 C 0.503 3.497 14 O -0.603 6.603 15 C -0.104 4.104 16 H 0.107 0.893 17 C -0.110 4.110 18 C -0.122 4.122 19 C 0.097 3.903 20 N -0.604 5.604 21 C 0.531 3.469 22 O -0.597 6.597 23 C -0.196 4.196 24 C -0.135 4.135 25 C -0.157 4.157 26 C 0.139 3.861 27 H 0.041 0.959 28 H 0.007 0.993 29 H 0.067 0.933 30 H 0.265 0.735 31 H 0.406 0.594 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.112 0.888 36 H 0.080 0.920 37 H 0.123 0.877 38 H 0.160 0.840 39 H 0.082 0.918 40 H 0.140 0.860 41 H 0.131 0.869 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.052 -12.417 20.674 26.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.167 3.833 3 H 0.015 0.985 4 C -0.582 4.582 5 H 0.095 0.905 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.799 3.201 9 H -0.180 1.180 10 H -0.206 1.206 11 H -0.210 1.210 12 N -0.348 5.348 13 C 0.290 3.710 14 O -0.485 6.485 15 C -0.126 4.126 16 H 0.125 0.875 17 C -0.148 4.148 18 C -0.160 4.160 19 C -0.024 4.024 20 N -0.335 5.335 21 C 0.321 3.679 22 O -0.478 6.478 23 C -0.217 4.217 24 C -0.173 4.173 25 C -0.195 4.195 26 C 0.015 3.985 27 H 0.060 0.940 28 H 0.026 0.974 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.241 0.759 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.131 0.869 36 H 0.098 0.902 37 H 0.141 0.859 38 H 0.178 0.822 39 H 0.100 0.900 40 H 0.158 0.842 41 H 0.149 0.851 42 H 0.096 0.904 43 H 0.078 0.922 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.219 -11.209 20.609 26.004 hybrid contribution -0.421 0.222 -1.386 1.466 sum 10.798 -10.987 19.222 24.633 Atomic orbital electron populations 1.21924 0.98665 0.99440 0.99417 1.18343 0.90878 0.91982 0.82123 0.98473 1.21563 1.32497 1.13535 0.90564 0.90506 1.25856 0.94879 0.95588 1.02514 1.70072 1.37077 1.24105 1.24562 0.85252 0.78051 0.78556 0.78195 1.17978 1.20604 1.21021 1.46236 1.64825 1.14177 1.09538 1.21120 0.77322 0.86935 0.85632 1.90647 1.53236 1.18631 1.85953 1.21559 1.00958 0.98910 0.91203 0.87501 1.21586 0.92095 1.00751 1.00404 1.21988 1.03999 0.97558 0.92456 1.22310 0.82166 0.96625 1.01316 1.48160 1.21429 1.55181 1.08770 1.20583 0.84188 0.78924 0.84169 1.90685 1.23952 1.48631 1.84504 1.22285 1.01502 1.04463 0.93407 1.23060 1.02280 0.90565 1.01354 1.23046 1.01614 1.00943 0.93862 1.21008 0.99026 0.93950 0.84518 0.94010 0.97371 0.91421 0.92580 0.75898 0.89805 0.91731 0.90434 0.86934 0.90156 0.85938 0.82239 0.89973 0.84170 0.85074 0.90414 0.92173 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.11 9.26 71.98 0.67 -6.44 16 2 C 0.27 14.21 2.56 44.24 0.11 14.32 16 3 H 0.00 -0.16 7.58 -2.39 -0.02 -0.18 16 4 C -0.54 -28.59 8.73 25.60 0.22 -28.37 16 5 H 0.08 3.72 7.74 -2.91 -0.02 3.70 16 6 C 0.01 0.61 5.30 84.66 0.45 1.06 16 7 N -0.92 -53.27 11.32 21.45 0.24 -53.03 16 8 Si 0.97 41.67 29.54 68.60 2.03 43.70 16 9 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 10 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 11 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 12 N -0.70 -29.08 4.96 -446.11 -2.21 -31.29 16 13 C 0.50 20.54 7.12 87.66 0.62 21.16 16 14 O -0.60 -30.82 15.58 -3.02 -0.05 -30.87 16 15 C -0.10 -2.98 2.68 -11.46 -0.03 -3.02 16 16 H 0.11 2.82 8.14 -2.38 -0.02 2.80 16 17 C -0.11 -2.24 5.07 30.62 0.16 -2.09 16 18 C -0.12 -1.45 6.10 30.82 0.19 -1.27 16 19 C 0.10 1.22 6.33 86.51 0.55 1.77 16 20 N -0.60 -13.86 2.97 -818.07 -2.43 -16.28 16 21 C 0.53 13.60 7.48 87.66 0.66 14.25 16 22 O -0.60 -21.75 15.67 -3.04 -0.05 -21.80 16 23 C -0.20 -2.88 4.96 -11.54 -0.06 -2.93 16 24 C -0.14 -1.55 10.24 30.62 0.31 -1.24 16 25 C -0.16 -2.25 10.05 30.62 0.31 -1.95 16 26 C 0.14 4.32 5.06 86.36 0.44 4.76 16 27 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.07 3.86 6.07 -2.39 -0.01 3.85 16 30 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 31 H 0.41 13.90 7.95 -92.71 -0.74 13.16 16 32 H 0.08 1.61 7.54 -2.39 -0.02 1.59 16 33 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.11 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.12 0.74 5.66 -2.39 -0.01 0.72 16 38 H 0.16 1.19 6.81 -2.39 -0.02 1.17 16 39 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.14 0.64 8.14 -2.39 -0.02 0.63 16 41 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.08 1.61 7.67 -2.38 -0.02 1.59 16 43 H 0.06 2.32 7.01 -2.38 -0.02 2.30 16 44 H 0.06 2.14 7.96 -2.39 -0.02 2.12 16 Total: -1.00 -78.23 354.01 2.39 -75.83 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 0.26 Total: 23.71 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 4.59 Total: 10.03 kcal Atomic # 7 Polarization: -96.21 SS G_CDS: -4.39 Total: -100.60 kcal Atomic # 8 Polarization: -52.57 SS G_CDS: -0.09 Total: -52.67 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -78.23 2.39 -75.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194645117.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.930 kcal (2) G-P(sol) polarization free energy of solvation -78.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds