Wall clock time and date at job start Tue Mar 31 2020 07:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47144 * 2 1 4 4 C 1.50698 * 109.47536 * 119.99986 * 2 1 3 5 5 H 1.07997 * 120.00222 * 119.99514 * 4 2 1 6 6 C 1.37879 * 119.99953 * 300.00055 * 4 2 1 7 7 N 1.31517 * 120.00036 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00253 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46948 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47217 * 119.99884 * 8 6 4 11 11 H 1.48505 * 109.47491 * 240.00092 * 8 6 4 12 12 N 1.46505 * 109.47026 * 239.99919 * 2 1 3 13 13 C 1.34773 * 119.99874 * 84.99703 * 12 2 1 14 14 O 1.21282 * 119.99953 * 0.02562 * 13 12 2 15 15 C 1.50701 * 120.00191 * 180.02562 * 13 12 2 16 16 H 1.08996 * 110.88541 * 62.35713 * 15 13 12 17 17 C 1.54630 * 110.96751 * 298.54899 * 15 13 12 18 18 C 1.51280 * 104.19706 * 217.08120 * 17 15 13 19 19 O 1.21280 * 124.94513 * 196.22739 * 18 17 15 20 20 N 1.34424 * 110.11335 * 16.25037 * 18 17 15 21 21 C 1.46497 * 124.34980 * 180.40793 * 20 18 17 22 22 C 1.54267 * 110.48629 * 60.02450 * 21 20 18 23 23 C 1.53876 * 106.59870 * 217.71063 * 22 21 20 24 24 C 1.54261 * 106.59990 * 0.02562 * 23 22 21 25 25 C 1.54888 * 104.19672 * 23.60631 * 24 23 22 26 26 C 1.46765 * 111.30035 * 0.67603 * 20 18 17 27 27 H 1.08995 * 109.47177 * 60.00010 * 1 2 3 28 28 H 1.09000 * 109.46763 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46827 * 300.00130 * 1 2 3 30 30 H 0.96997 * 120.00453 * 179.97438 * 7 6 4 31 31 H 0.96999 * 120.00068 * 265.00153 * 12 2 1 32 32 H 1.08995 * 110.48720 * 98.40041 * 17 15 13 33 33 H 1.09007 * 110.48696 * 335.76011 * 17 15 13 34 34 H 1.09004 * 110.53983 * 182.63691 * 21 20 18 35 35 H 1.08995 * 110.03032 * 98.42791 * 22 21 20 36 36 H 1.08998 * 110.03405 * 336.99729 * 22 21 20 37 37 H 1.08998 * 110.02768 * 119.28860 * 23 22 21 38 38 H 1.08994 * 110.03051 * 240.71540 * 23 22 21 39 39 H 1.09000 * 110.48928 * 142.28640 * 24 23 22 40 40 H 1.08999 * 110.48469 * 264.93049 * 24 23 22 41 41 H 1.09005 * 110.75648 * 80.37263 * 25 24 23 42 42 H 1.08999 * 110.75852 * 203.74195 * 25 24 23 43 43 H 1.09000 * 110.24591 * 101.72110 * 26 20 18 44 44 H 1.09003 * 110.24346 * 223.71913 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2393 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3215 -1.1202 4.0079 9 1 3.1456 -2.2876 3.6037 10 1 3.1468 -0.1872 4.8164 11 1 1.1663 -1.5866 4.8161 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0183 -2.3572 14 8 1.8589 1.1585 -2.4115 15 6 2.6487 -0.7288 -3.5878 16 1 1.9694 -1.5304 -3.8778 17 6 4.0810 -1.2692 -3.3695 18 6 4.7598 -1.0721 -4.7070 19 8 5.7919 -1.6099 -5.0482 20 7 4.0528 -0.2136 -5.4621 21 6 4.4245 0.1926 -6.8197 22 6 4.4855 -1.0343 -7.7528 23 6 5.6728 -0.8044 -8.7042 24 6 6.2922 0.5539 -8.3157 25 6 5.8669 0.7573 -6.8404 26 6 2.8641 0.2692 -4.7494 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.7090 1.1615 3.4844 31 1 2.2490 -1.6318 -1.1527 32 1 4.0539 -2.3268 -3.1076 33 1 4.5909 -0.6963 -2.5948 34 1 3.7199 0.9300 -7.2046 35 1 3.5603 -1.1159 -8.3232 36 1 4.6454 -1.9403 -7.1683 37 1 6.4089 -1.5989 -8.5815 38 1 5.3237 -0.7745 -9.7364 39 1 7.3784 0.5154 -8.3978 40 1 5.8894 1.3499 -8.9420 41 1 6.5135 0.1907 -6.1703 42 1 5.8710 1.8156 -6.5795 43 1 3.0389 1.2725 -4.3609 44 1 1.9994 0.2662 -5.4130 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194715556.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:16 Heat of formation + Delta-G solvation = -87.003103 kcal Electronic energy + Delta-G solvation = -24062.649427 eV Core-core repulsion = 20592.983339 eV Total energy + Delta-G solvation = -3469.666088 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.89516 -38.96493 -37.51906 -36.09509 -34.82894 -32.69000 -31.97510 -29.03596 -28.89081 -27.63370 -27.41996 -25.30853 -23.34026 -21.81234 -20.72708 -20.62555 -19.43686 -18.88314 -17.56288 -16.94402 -16.41619 -15.91601 -15.42278 -15.09860 -14.85175 -14.60327 -14.35995 -13.93454 -13.74179 -13.60290 -13.28149 -13.13266 -12.73632 -12.45837 -12.01508 -11.82022 -11.65185 -11.52636 -11.42164 -11.28552 -11.25133 -11.12310 -11.02990 -10.98144 -10.77304 -10.61337 -10.34814 -10.28335 -9.71521 -9.13653 -9.08628 -8.69004 -8.60455 -8.01067 -6.16856 -4.26305 2.56986 2.86514 3.18981 3.21604 3.29768 3.32232 3.87121 4.27428 4.33301 4.38662 4.41200 4.54791 4.68695 4.93171 4.99207 5.09484 5.15951 5.27721 5.30142 5.31149 5.43985 5.47996 5.50198 5.63242 5.65055 5.72241 5.79980 5.84634 5.94939 5.98179 6.03999 6.17822 6.60838 6.76466 6.89835 7.07618 7.08904 7.36311 7.48389 7.64027 7.85063 8.09525 8.15908 8.56216 8.71410 9.00209 9.41450 10.89124 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032552 B = 0.003076 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.942623 B = 9100.344534 C = 9504.644088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.049 0.951 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.703 5.703 13 C 0.512 3.488 14 O -0.550 6.550 15 C -0.124 4.124 16 H 0.112 0.888 17 C -0.147 4.147 18 C 0.522 3.478 19 O -0.531 6.531 20 N -0.614 5.614 21 C 0.153 3.847 22 C -0.135 4.135 23 C -0.119 4.119 24 C -0.120 4.120 25 C -0.141 4.141 26 C 0.118 3.882 27 H 0.015 0.985 28 H 0.027 0.973 29 H 0.090 0.910 30 H 0.264 0.736 31 H 0.390 0.610 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.092 0.908 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.991 -3.153 -18.975 19.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.067 0.933 4 C -0.573 4.573 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.350 5.350 13 C 0.296 3.704 14 O -0.429 6.429 15 C -0.147 4.147 16 H 0.130 0.870 17 C -0.187 4.187 18 C 0.310 3.690 19 O -0.408 6.408 20 N -0.348 5.348 21 C 0.050 3.950 22 C -0.173 4.173 23 C -0.157 4.157 24 C -0.158 4.158 25 C -0.179 4.179 26 C -0.005 4.005 27 H 0.034 0.966 28 H 0.046 0.954 29 H 0.109 0.891 30 H 0.074 0.926 31 H 0.223 0.777 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.113 0.887 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.110 0.890 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.233 -2.442 -19.076 19.931 hybrid contribution 0.191 -0.899 0.964 1.332 sum 5.424 -3.341 -18.112 19.200 Atomic orbital electron populations 1.22083 0.98384 0.99176 1.00972 1.18783 0.91077 0.94005 0.79925 0.93278 1.21248 1.32489 1.13274 0.90272 0.91947 1.24889 0.94771 0.94934 0.99110 1.69906 1.35864 1.22435 1.23851 0.86394 0.78622 0.79559 0.82537 1.19681 1.20862 1.20873 1.46525 1.64451 1.13647 1.10379 1.19895 0.78858 0.87300 0.84374 1.90673 1.51478 1.15880 1.84918 1.22320 0.97529 0.99412 0.95391 0.86970 1.22375 0.94679 1.04679 0.96983 1.20781 0.83826 0.77959 0.86406 1.90688 1.23054 1.50616 1.76403 1.48398 1.26148 1.45220 1.14989 1.21870 0.96732 0.96165 0.80209 1.22484 0.98481 0.98958 0.97380 1.22030 0.97350 0.97722 0.98556 1.22258 1.00635 0.97146 0.95774 1.22917 0.96243 1.01105 0.97622 1.22044 0.87365 0.98598 0.92478 0.96611 0.95416 0.89107 0.92586 0.77737 0.87341 0.87049 0.88725 0.91667 0.90684 0.91626 0.91921 0.91467 0.91623 0.89505 0.91387 0.88980 0.90045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 9.26 37.16 0.34 -3.18 16 2 C 0.26 6.39 2.56 -69.08 -0.18 6.22 16 3 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 4 C -0.53 -13.68 8.73 -34.44 -0.30 -13.99 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -24.35 11.32 55.43 0.63 -23.72 16 8 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 9 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 10 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 N -0.70 -13.42 5.02 -54.93 -0.28 -13.70 16 13 C 0.51 9.08 7.04 -10.99 -0.08 9.00 16 14 O -0.55 -11.91 15.23 5.56 0.08 -11.82 16 15 C -0.12 -1.56 3.56 -90.04 -0.32 -1.88 16 16 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 17 C -0.15 -1.81 6.37 -26.74 -0.17 -1.98 16 18 C 0.52 7.17 7.07 -10.86 -0.08 7.10 16 19 O -0.53 -8.71 15.17 5.56 0.08 -8.62 16 20 N -0.61 -7.32 2.93 -162.84 -0.48 -7.80 16 21 C 0.15 1.58 3.53 -66.26 -0.23 1.34 16 22 C -0.13 -1.32 6.31 -25.61 -0.16 -1.48 16 23 C -0.12 -1.03 6.80 -25.61 -0.17 -1.21 16 24 C -0.12 -1.03 6.83 -25.08 -0.17 -1.20 16 25 C -0.14 -1.48 6.37 -24.73 -0.16 -1.64 16 26 C 0.12 1.40 6.63 -3.03 -0.02 1.38 16 27 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 30 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.39 6.39 8.54 -40.82 -0.35 6.04 16 32 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.11 1.50 7.89 -51.93 -0.41 1.09 16 34 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.90 6.72 -51.93 -0.35 0.55 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 1.15 6.22 -51.93 -0.32 0.83 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.09 1.27 7.07 -51.93 -0.37 0.90 16 44 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 350.68 15.07 5.28 5.28 Total: -1.00 -30.61 350.68 -8.60 -39.21 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -7.12 Total: 5.79 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -1.79 Total: 0.14 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: -0.13 Total: -45.22 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: 0.17 Total: -20.45 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.61 -8.60 -39.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194715556.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.790 kcal (2) G-P(sol) polarization free energy of solvation -30.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds