Wall clock time and date at job start Tue Mar 31 2020 07:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47144 * 2 1 4 4 C 1.50698 * 109.47536 * 119.99986 * 2 1 3 5 5 H 1.07997 * 120.00222 * 119.99514 * 4 2 1 6 6 C 1.37879 * 119.99953 * 300.00055 * 4 2 1 7 7 N 1.31517 * 120.00036 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00253 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46948 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47217 * 119.99884 * 8 6 4 11 11 H 1.48505 * 109.47491 * 240.00092 * 8 6 4 12 12 N 1.46505 * 109.47026 * 239.99919 * 2 1 3 13 13 C 1.34773 * 119.99874 * 84.99703 * 12 2 1 14 14 O 1.21282 * 119.99953 * 0.02562 * 13 12 2 15 15 C 1.50701 * 120.00191 * 180.02562 * 13 12 2 16 16 H 1.08996 * 110.88541 * 62.35713 * 15 13 12 17 17 C 1.54630 * 110.96751 * 298.54899 * 15 13 12 18 18 C 1.51280 * 104.19706 * 217.08120 * 17 15 13 19 19 O 1.21280 * 124.94513 * 196.22739 * 18 17 15 20 20 N 1.34424 * 110.11335 * 16.25037 * 18 17 15 21 21 C 1.46497 * 124.34980 * 180.40793 * 20 18 17 22 22 C 1.54267 * 110.48629 * 60.02450 * 21 20 18 23 23 C 1.53876 * 106.59870 * 217.71063 * 22 21 20 24 24 C 1.54261 * 106.59990 * 0.02562 * 23 22 21 25 25 C 1.54888 * 104.19672 * 23.60631 * 24 23 22 26 26 C 1.46765 * 111.30035 * 0.67603 * 20 18 17 27 27 H 1.08995 * 109.47177 * 60.00010 * 1 2 3 28 28 H 1.09000 * 109.46763 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46827 * 300.00130 * 1 2 3 30 30 H 0.96997 * 120.00453 * 179.97438 * 7 6 4 31 31 H 0.96999 * 120.00068 * 265.00153 * 12 2 1 32 32 H 1.08995 * 110.48720 * 98.40041 * 17 15 13 33 33 H 1.09007 * 110.48696 * 335.76011 * 17 15 13 34 34 H 1.09004 * 110.53983 * 182.63691 * 21 20 18 35 35 H 1.08995 * 110.03032 * 98.42791 * 22 21 20 36 36 H 1.08998 * 110.03405 * 336.99729 * 22 21 20 37 37 H 1.08998 * 110.02768 * 119.28860 * 23 22 21 38 38 H 1.08994 * 110.03051 * 240.71540 * 23 22 21 39 39 H 1.09000 * 110.48928 * 142.28640 * 24 23 22 40 40 H 1.08999 * 110.48469 * 264.93049 * 24 23 22 41 41 H 1.09005 * 110.75648 * 80.37263 * 25 24 23 42 42 H 1.08999 * 110.75852 * 203.74195 * 25 24 23 43 43 H 1.09000 * 110.24591 * 101.72110 * 26 20 18 44 44 H 1.09003 * 110.24346 * 223.71913 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2393 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3215 -1.1202 4.0079 9 1 3.1456 -2.2876 3.6037 10 1 3.1468 -0.1872 4.8164 11 1 1.1663 -1.5866 4.8161 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0183 -2.3572 14 8 1.8589 1.1585 -2.4115 15 6 2.6487 -0.7288 -3.5878 16 1 1.9694 -1.5304 -3.8778 17 6 4.0810 -1.2692 -3.3695 18 6 4.7598 -1.0721 -4.7070 19 8 5.7919 -1.6099 -5.0482 20 7 4.0528 -0.2136 -5.4621 21 6 4.4245 0.1926 -6.8197 22 6 4.4855 -1.0343 -7.7528 23 6 5.6728 -0.8044 -8.7042 24 6 6.2922 0.5539 -8.3157 25 6 5.8669 0.7573 -6.8404 26 6 2.8641 0.2692 -4.7494 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.7090 1.1615 3.4844 31 1 2.2490 -1.6318 -1.1527 32 1 4.0539 -2.3268 -3.1076 33 1 4.5909 -0.6963 -2.5948 34 1 3.7199 0.9300 -7.2046 35 1 3.5603 -1.1159 -8.3232 36 1 4.6454 -1.9403 -7.1683 37 1 6.4089 -1.5989 -8.5815 38 1 5.3237 -0.7745 -9.7364 39 1 7.3784 0.5154 -8.3978 40 1 5.8894 1.3499 -8.9420 41 1 6.5135 0.1907 -6.1703 42 1 5.8710 1.8156 -6.5795 43 1 3.0389 1.2725 -4.3609 44 1 1.9994 0.2662 -5.4130 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194715556.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:15 Heat of formation + Delta-G solvation = -106.309542 kcal Electronic energy + Delta-G solvation = -24063.486617 eV Core-core repulsion = 20592.983339 eV Total energy + Delta-G solvation = -3470.503278 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.96783 -40.37115 -38.40059 -37.30901 -36.56389 -34.37715 -33.18694 -30.75152 -29.64997 -28.68590 -28.35430 -27.31432 -24.65340 -22.76928 -22.30747 -21.36105 -20.98074 -19.87821 -19.01991 -17.93125 -17.83780 -17.15119 -17.00320 -16.50181 -15.88639 -15.83819 -15.71510 -15.11548 -14.87523 -14.58267 -14.49337 -14.33401 -14.14256 -13.95582 -13.65803 -13.03042 -12.87100 -12.83784 -12.75959 -12.55901 -12.45458 -12.29110 -12.24732 -12.11179 -12.06942 -12.00837 -11.86291 -11.31341 -11.06659 -10.90892 -10.61867 -10.51117 -9.75179 -9.65465 -8.16632 -6.33203 1.44623 1.46737 1.50067 1.57707 1.76211 1.90685 2.35893 2.58780 3.14328 3.24571 3.38989 3.65073 3.70725 3.85551 3.88211 4.02003 4.27732 4.36981 4.48044 4.49374 4.54777 4.58751 4.64188 4.77408 4.78740 4.81400 4.90155 4.95210 4.97909 5.03424 5.10914 5.13305 5.18672 5.26145 5.46778 5.46837 5.63120 5.70542 5.72577 5.92419 6.08493 6.13087 6.75484 6.95886 7.11838 7.34159 7.55037 8.89600 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032552 B = 0.003076 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.942623 B = 9100.344534 C = 9504.644088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.270 3.730 3 H 0.000 1.000 4 C -0.544 4.544 5 H 0.074 0.926 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.968 3.032 9 H -0.260 1.260 10 H -0.286 1.286 11 H -0.280 1.280 12 N -0.700 5.700 13 C 0.513 3.487 14 O -0.592 6.592 15 C -0.106 4.106 16 H 0.149 0.851 17 C -0.142 4.142 18 C 0.517 3.483 19 O -0.562 6.562 20 N -0.607 5.607 21 C 0.145 3.855 22 C -0.131 4.131 23 C -0.118 4.118 24 C -0.115 4.115 25 C -0.144 4.144 26 C 0.121 3.879 27 H 0.016 0.984 28 H 0.041 0.959 29 H 0.064 0.936 30 H 0.265 0.735 31 H 0.406 0.594 32 H 0.131 0.869 33 H 0.097 0.903 34 H 0.119 0.881 35 H 0.085 0.915 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.054 0.946 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.805 -4.577 -20.455 21.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.167 3.833 3 H 0.018 0.982 4 C -0.583 4.583 5 H 0.092 0.908 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.793 3.207 9 H -0.184 1.184 10 H -0.212 1.212 11 H -0.205 1.205 12 N -0.348 5.348 13 C 0.299 3.701 14 O -0.473 6.473 15 C -0.128 4.128 16 H 0.167 0.833 17 C -0.183 4.183 18 C 0.306 3.694 19 O -0.442 6.442 20 N -0.339 5.339 21 C 0.043 3.957 22 C -0.169 4.169 23 C -0.156 4.156 24 C -0.153 4.153 25 C -0.182 4.182 26 C -0.002 4.002 27 H 0.035 0.965 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.242 0.758 32 H 0.149 0.851 33 H 0.116 0.884 34 H 0.137 0.863 35 H 0.103 0.897 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.052 -3.889 -20.591 21.556 hybrid contribution 0.267 -0.385 1.387 1.464 sum 5.319 -4.275 -19.205 20.381 Atomic orbital electron populations 1.21900 0.98176 0.99577 0.99707 1.18342 0.91187 0.91937 0.81863 0.98194 1.21598 1.32346 1.13489 0.90830 0.90797 1.25753 0.94952 0.95578 1.02242 1.70050 1.37104 1.23930 1.24471 0.85352 0.78068 0.78568 0.78685 1.18369 1.21215 1.20533 1.46246 1.64683 1.14341 1.09558 1.20667 0.77498 0.86817 0.85146 1.90662 1.53011 1.17986 1.85663 1.22223 0.98036 0.99856 0.92677 0.83320 1.22368 0.94020 1.05890 0.95989 1.20961 0.83535 0.78010 0.86886 1.90675 1.24401 1.52017 1.77060 1.48465 1.25717 1.44283 1.15474 1.22157 0.96997 0.97079 0.79483 1.22452 0.99836 0.97368 0.97241 1.22041 0.96706 0.97284 0.99535 1.22260 1.00794 0.97760 0.94473 1.22891 0.96092 1.00711 0.98498 1.22036 0.88209 0.97222 0.92750 0.96470 0.93981 0.91742 0.92627 0.75822 0.85079 0.88431 0.86328 0.89668 0.93202 0.92950 0.89756 0.91507 0.89557 0.92707 0.91075 0.91040 0.87231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.49 9.26 71.98 0.67 -5.82 16 2 C 0.27 13.28 2.56 44.24 0.11 13.39 16 3 H 0.00 0.01 7.58 -2.39 -0.02 -0.01 16 4 C -0.54 -27.75 8.73 25.60 0.22 -27.53 16 5 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 6 C 0.01 0.78 5.30 84.65 0.45 1.23 16 7 N -0.92 -51.55 11.32 21.45 0.24 -51.30 16 8 Si 0.97 41.28 29.54 68.60 2.03 43.31 16 9 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 10 H -0.29 -12.27 7.11 99.48 0.71 -11.57 16 11 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 12 N -0.70 -26.20 5.02 -446.09 -2.24 -28.44 16 13 C 0.51 17.77 7.04 87.66 0.62 18.38 16 14 O -0.59 -25.88 15.23 -3.04 -0.05 -25.93 16 15 C -0.11 -2.43 3.56 -10.42 -0.04 -2.47 16 16 H 0.15 2.44 8.14 -2.39 -0.02 2.42 16 17 C -0.14 -3.30 6.37 30.59 0.19 -3.10 16 18 C 0.52 13.77 7.07 87.90 0.62 14.39 16 19 O -0.56 -18.49 15.17 -3.03 -0.05 -18.53 16 20 N -0.61 -13.53 2.93 -787.68 -2.31 -15.84 16 21 C 0.14 2.71 3.53 46.08 0.16 2.87 16 22 C -0.13 -2.29 6.31 31.32 0.20 -2.09 16 23 C -0.12 -1.83 6.80 31.32 0.21 -1.62 16 24 C -0.12 -1.76 6.83 31.67 0.22 -1.55 16 25 C -0.14 -2.92 6.37 31.89 0.20 -2.72 16 26 C 0.12 2.63 6.63 86.89 0.58 3.20 16 27 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.06 3.46 6.07 -2.38 -0.01 3.44 16 30 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 31 H 0.41 12.54 8.54 -92.71 -0.79 11.75 16 32 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.10 2.58 7.89 -2.38 -0.02 2.56 16 34 H 0.12 1.67 8.10 -2.38 -0.02 1.65 16 35 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.05 1.14 6.72 -2.39 -0.02 1.13 16 37 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 0.95 8.14 -2.39 -0.02 0.94 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.05 1.48 6.22 -2.38 -0.01 1.47 16 42 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.07 1.91 7.07 -2.39 -0.02 1.89 16 44 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -68.53 350.68 2.25 -66.28 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.20 Total: 23.89 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 4.42 Total: 6.57 kcal Atomic # 7 Polarization: -91.28 SS G_CDS: -4.30 Total: -95.58 kcal Atomic # 8 Polarization: -44.37 SS G_CDS: -0.09 Total: -44.46 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -68.53 2.25 -66.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194715556.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.033 kcal (2) G-P(sol) polarization free energy of solvation -68.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds