Wall clock time and date at job start Tue Mar 31 2020 07:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47097 * 2 1 4 4 C 1.50707 * 109.46692 * 240.00368 * 2 1 3 5 5 H 1.07997 * 120.00412 * 275.00321 * 4 2 1 6 6 C 1.37878 * 119.99902 * 95.00630 * 4 2 1 7 7 N 1.31508 * 120.00170 * 184.90962 * 6 4 2 8 8 Si 1.86807 * 119.99876 * 4.91088 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.83582 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.83208 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.83521 * 8 6 4 12 12 N 1.46495 * 109.46950 * 120.00931 * 2 1 3 13 13 C 1.34780 * 119.99388 * 274.99377 * 12 2 1 14 14 O 1.21281 * 120.00277 * 0.02562 * 13 12 2 15 15 C 1.50706 * 119.99424 * 180.02562 * 13 12 2 16 16 H 1.08998 * 110.85694 * 59.30524 * 15 13 12 17 17 C 1.54630 * 110.97023 * 295.50981 * 15 13 12 18 18 C 1.51342 * 104.16627 * 217.11112 * 17 15 13 19 19 O 1.21280 * 124.93127 * 196.22300 * 18 17 15 20 20 N 1.34428 * 110.12921 * 16.20695 * 18 17 15 21 21 C 1.46499 * 124.34616 * 180.46193 * 20 18 17 22 22 C 1.54267 * 110.03513 * 57.13632 * 21 20 18 23 23 C 1.54888 * 104.19723 * 217.10541 * 22 21 20 24 24 C 1.54893 * 102.74916 * 37.94166 * 23 22 21 25 25 C 1.53875 * 110.03029 * 299.96876 * 21 20 18 26 26 C 1.46760 * 111.30019 * 0.43574 * 20 18 17 27 27 H 1.09006 * 109.47034 * 55.03017 * 1 2 3 28 28 H 1.08993 * 109.47019 * 295.03459 * 1 2 3 29 29 H 1.09001 * 109.47478 * 175.02850 * 1 2 3 30 30 H 0.96999 * 120.00090 * 179.97438 * 7 6 4 31 31 H 0.97000 * 120.00171 * 94.99890 * 12 2 1 32 32 H 1.08998 * 110.48632 * 335.76176 * 17 15 13 33 33 H 1.08995 * 110.48861 * 98.40963 * 17 15 13 34 34 H 1.09001 * 110.01330 * 178.57827 * 21 20 18 35 35 H 1.08995 * 110.48927 * 335.78634 * 22 21 20 36 36 H 1.09007 * 110.48582 * 98.42629 * 22 21 20 37 37 H 1.09001 * 110.75472 * 279.62762 * 23 22 21 38 38 H 1.08997 * 110.76142 * 156.25912 * 23 22 21 39 39 H 1.08994 * 110.48335 * 203.38149 * 24 23 22 40 40 H 1.08997 * 110.48336 * 80.73867 * 24 23 22 41 41 H 1.09002 * 110.03408 * 238.57304 * 25 21 20 42 42 H 1.08999 * 110.03176 * 0.02562 * 25 21 20 43 43 H 1.09001 * 110.24308 * 223.99026 * 26 20 18 44 44 H 1.08993 * 110.31726 * 102.02635 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.1354 -1.7854 -1.2293 6 6 2.3603 0.0122 -2.3581 7 7 2.7059 -0.6129 -3.4623 8 14 2.3136 1.8793 -2.3173 9 1 3.5992 2.3949 -1.7820 10 1 2.1059 2.3994 -3.6926 11 1 1.1987 2.3276 -1.4448 12 7 2.0183 -0.6908 1.1960 13 6 2.1471 -0.0185 2.3570 14 8 1.8583 1.1582 2.4117 15 6 2.6499 -0.7290 3.5873 16 1 3.6447 -1.1411 3.4181 17 6 1.6620 -1.8323 4.0318 18 6 1.7062 -1.7819 5.5437 19 8 1.2974 -2.6547 6.2799 20 7 2.2649 -0.6294 5.9520 21 6 2.4705 -0.2622 7.3553 22 6 3.3229 -1.3357 8.0630 23 6 2.7169 -1.4248 9.4857 24 6 1.1991 -1.2649 9.2213 25 6 1.1202 -0.2172 8.0917 26 6 2.6427 0.2133 4.8115 27 1 -0.3633 0.5890 -0.8422 28 1 -0.3633 0.4348 0.9311 29 1 -0.3634 -1.0238 -0.0891 30 1 2.9363 -0.1045 -4.2556 31 1 2.2490 -1.6319 1.1524 32 1 0.6569 -1.6119 3.6722 33 1 1.9917 -2.8070 3.6722 34 1 2.9630 0.7082 7.4186 35 1 3.2339 -2.2931 7.5498 36 1 4.3662 -1.0235 8.1116 37 1 3.0869 -0.6150 10.1145 38 1 2.9305 -2.3939 9.9366 39 1 0.6926 -0.9011 10.1152 40 1 0.7670 -2.2109 8.8951 41 1 0.9576 0.7748 8.5132 42 1 0.3119 -0.4690 7.4051 43 1 3.6351 0.6364 4.9676 44 1 1.9117 1.0094 4.6705 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194715575.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:18 Heat of formation + Delta-G solvation = -86.050987 kcal Electronic energy + Delta-G solvation = -24209.154890 eV Core-core repulsion = 20739.530089 eV Total energy + Delta-G solvation = -3469.624801 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.96859 -39.09542 -37.50932 -36.15402 -34.92633 -32.64766 -32.06535 -29.76197 -28.91172 -27.69062 -27.54518 -25.37483 -23.41140 -21.69539 -20.88061 -20.57266 -19.59484 -18.82086 -17.76843 -16.91171 -16.70634 -16.05651 -15.50127 -15.19114 -15.13422 -14.50491 -14.42830 -13.96748 -13.73899 -13.50198 -13.36739 -13.10717 -13.00878 -12.57037 -12.38907 -11.90447 -11.77940 -11.60670 -11.48355 -11.31624 -11.27181 -11.26553 -11.16219 -11.05459 -10.85683 -10.72659 -10.64115 -9.94002 -9.79213 -9.27031 -9.25012 -8.76036 -8.73549 -8.20506 -6.28659 -4.32994 2.53738 2.82663 3.07035 3.22072 3.30112 3.36405 3.76424 4.23252 4.27362 4.31025 4.40551 4.50788 4.69010 4.87589 4.92523 5.09055 5.10568 5.24819 5.29038 5.33669 5.41548 5.43518 5.47194 5.57035 5.62380 5.69893 5.73865 5.81321 5.90830 5.96748 6.01353 6.20457 6.27527 6.45371 6.56647 6.61619 6.86049 7.04164 7.11709 7.29263 7.46756 8.04468 8.12940 8.47334 8.70846 8.83422 9.32803 10.82994 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.036882 B = 0.003201 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.001954 B = 8745.075695 C = 8934.719224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.230 3.770 3 H 0.051 0.949 4 C -0.532 4.532 5 H 0.079 0.921 6 C 0.081 3.919 7 N -0.888 5.888 8 Si 0.875 3.125 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.260 1.260 12 N -0.698 5.698 13 C 0.512 3.488 14 O -0.555 6.555 15 C -0.125 4.125 16 H 0.114 0.886 17 C -0.145 4.145 18 C 0.521 3.479 19 O -0.528 6.528 20 N -0.615 5.615 21 C 0.154 3.846 22 C -0.135 4.135 23 C -0.120 4.120 24 C -0.120 4.120 25 C -0.132 4.132 26 C 0.117 3.883 27 H 0.052 0.948 28 H 0.028 0.972 29 H 0.048 0.952 30 H 0.268 0.732 31 H 0.395 0.605 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.911 -0.176 21.562 21.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.128 3.872 3 H 0.069 0.931 4 C -0.570 4.570 5 H 0.097 0.903 6 C -0.123 4.123 7 N -0.524 5.524 8 Si 0.701 3.299 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.185 1.185 12 N -0.345 5.345 13 C 0.296 3.704 14 O -0.434 6.434 15 C -0.147 4.147 16 H 0.132 0.868 17 C -0.186 4.186 18 C 0.309 3.691 19 O -0.404 6.404 20 N -0.349 5.349 21 C 0.051 3.949 22 C -0.173 4.173 23 C -0.158 4.158 24 C -0.157 4.157 25 C -0.170 4.170 26 C -0.006 4.006 27 H 0.071 0.929 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.228 0.772 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.551 0.259 21.803 21.811 hybrid contribution 0.244 0.579 -0.362 0.725 sum 0.795 0.838 21.440 21.471 Atomic orbital electron populations 1.22222 0.98501 1.00670 0.99280 1.19157 0.90969 0.94335 0.82705 0.93142 1.21005 1.45398 0.95663 0.94939 0.90264 1.24948 0.93575 0.98658 0.95152 1.69876 1.44531 1.36261 1.01703 0.86892 0.79769 0.85796 0.77430 1.19836 1.21167 1.18476 1.46646 1.64266 1.13961 1.09646 1.20004 0.78653 0.87298 0.84438 1.90658 1.51764 1.15990 1.85026 1.22281 1.01427 0.96650 0.94353 0.86773 1.22364 1.01972 1.00666 0.93575 1.20765 0.76458 0.81235 0.90631 1.90696 1.48312 1.40558 1.60880 1.48515 1.61087 1.19250 1.06058 1.21663 0.95995 0.98434 0.78793 1.22741 0.98474 1.00039 0.96081 1.22407 0.95639 1.01557 0.96156 1.22292 0.96276 0.99714 0.97448 1.22486 0.97196 0.99410 0.97934 1.22010 1.02355 0.93341 0.82928 0.92863 0.95248 0.93329 0.92170 0.77152 0.87331 0.87234 0.89016 0.90152 0.91496 0.91613 0.91472 0.92003 0.90810 0.91374 0.91140 0.90040 0.89009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.47 37.16 0.35 -2.75 16 2 C 0.23 5.20 2.22 -69.08 -0.15 5.04 16 3 H 0.05 1.25 4.73 -51.93 -0.25 1.00 16 4 C -0.53 -13.76 9.05 -34.44 -0.31 -14.07 16 5 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 6 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 7 N -0.89 -25.55 13.96 55.43 0.77 -24.78 16 8 Si 0.87 20.94 26.99 -169.99 -4.59 16.35 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.26 -6.13 6.82 56.52 0.39 -5.74 16 12 N -0.70 -12.77 5.06 -54.93 -0.28 -13.05 16 13 C 0.51 8.66 7.03 -10.98 -0.08 8.59 16 14 O -0.55 -11.36 15.19 5.56 0.08 -11.27 16 15 C -0.13 -1.51 3.54 -90.13 -0.32 -1.83 16 16 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 17 C -0.15 -1.69 6.40 -26.71 -0.17 -1.86 16 18 C 0.52 6.81 6.85 -10.83 -0.07 6.74 16 19 O -0.53 -8.26 15.92 5.56 0.09 -8.17 16 20 N -0.62 -7.00 2.83 -163.55 -0.46 -7.46 16 21 C 0.15 1.51 3.55 -66.81 -0.24 1.28 16 22 C -0.14 -1.28 6.29 -25.07 -0.16 -1.44 16 23 C -0.12 -1.00 6.91 -24.74 -0.17 -1.17 16 24 C -0.12 -1.13 6.83 -25.07 -0.17 -1.30 16 25 C -0.13 -1.31 6.02 -25.61 -0.15 -1.47 16 26 C 0.12 1.33 6.65 -3.12 -0.02 1.31 16 27 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.39 6.32 8.59 -40.82 -0.35 5.96 16 32 H 0.11 1.32 7.89 -51.93 -0.41 0.91 16 33 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.09 0.75 8.09 -51.93 -0.42 0.33 16 35 H 0.08 0.95 6.45 -51.93 -0.33 0.62 16 36 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.85 7.37 -51.93 -0.38 0.47 16 43 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.09 1.20 7.00 -51.93 -0.36 0.83 16 LS Contribution 351.37 15.07 5.30 5.30 Total: -1.00 -31.20 351.37 -8.00 -39.20 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -7.15 Total: 4.70 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -1.76 Total: -0.81 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: 0.03 Total: -45.29 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: 0.17 Total: -19.44 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.59 Total: 16.35 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.20 -8.00 -39.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194715575.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.849 kcal (2) G-P(sol) polarization free energy of solvation -31.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds