Wall clock time and date at job start Tue Mar 31 2020 07:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47097 * 2 1 4 4 C 1.50707 * 109.46692 * 240.00368 * 2 1 3 5 5 H 1.07997 * 120.00412 * 275.00321 * 4 2 1 6 6 C 1.37878 * 119.99902 * 95.00630 * 4 2 1 7 7 N 1.31508 * 120.00170 * 184.90962 * 6 4 2 8 8 Si 1.86807 * 119.99876 * 4.91088 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.83582 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.83208 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.83521 * 8 6 4 12 12 N 1.46495 * 109.46950 * 120.00931 * 2 1 3 13 13 C 1.34780 * 119.99388 * 274.99377 * 12 2 1 14 14 O 1.21281 * 120.00277 * 0.02562 * 13 12 2 15 15 C 1.50706 * 119.99424 * 180.02562 * 13 12 2 16 16 H 1.08998 * 110.85694 * 59.30524 * 15 13 12 17 17 C 1.54630 * 110.97023 * 295.50981 * 15 13 12 18 18 C 1.51342 * 104.16627 * 217.11112 * 17 15 13 19 19 O 1.21280 * 124.93127 * 196.22300 * 18 17 15 20 20 N 1.34428 * 110.12921 * 16.20695 * 18 17 15 21 21 C 1.46499 * 124.34616 * 180.46193 * 20 18 17 22 22 C 1.54267 * 110.03513 * 57.13632 * 21 20 18 23 23 C 1.54888 * 104.19723 * 217.10541 * 22 21 20 24 24 C 1.54893 * 102.74916 * 37.94166 * 23 22 21 25 25 C 1.53875 * 110.03029 * 299.96876 * 21 20 18 26 26 C 1.46760 * 111.30019 * 0.43574 * 20 18 17 27 27 H 1.09006 * 109.47034 * 55.03017 * 1 2 3 28 28 H 1.08993 * 109.47019 * 295.03459 * 1 2 3 29 29 H 1.09001 * 109.47478 * 175.02850 * 1 2 3 30 30 H 0.96999 * 120.00090 * 179.97438 * 7 6 4 31 31 H 0.97000 * 120.00171 * 94.99890 * 12 2 1 32 32 H 1.08998 * 110.48632 * 335.76176 * 17 15 13 33 33 H 1.08995 * 110.48861 * 98.40963 * 17 15 13 34 34 H 1.09001 * 110.01330 * 178.57827 * 21 20 18 35 35 H 1.08995 * 110.48927 * 335.78634 * 22 21 20 36 36 H 1.09007 * 110.48582 * 98.42629 * 22 21 20 37 37 H 1.09001 * 110.75472 * 279.62762 * 23 22 21 38 38 H 1.08997 * 110.76142 * 156.25912 * 23 22 21 39 39 H 1.08994 * 110.48335 * 203.38149 * 24 23 22 40 40 H 1.08997 * 110.48336 * 80.73867 * 24 23 22 41 41 H 1.09002 * 110.03408 * 238.57304 * 25 21 20 42 42 H 1.08999 * 110.03176 * 0.02562 * 25 21 20 43 43 H 1.09001 * 110.24308 * 223.99026 * 26 20 18 44 44 H 1.08993 * 110.31726 * 102.02635 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.1354 -1.7854 -1.2293 6 6 2.3603 0.0122 -2.3581 7 7 2.7059 -0.6129 -3.4623 8 14 2.3136 1.8793 -2.3173 9 1 3.5992 2.3949 -1.7820 10 1 2.1059 2.3994 -3.6926 11 1 1.1987 2.3276 -1.4448 12 7 2.0183 -0.6908 1.1960 13 6 2.1471 -0.0185 2.3570 14 8 1.8583 1.1582 2.4117 15 6 2.6499 -0.7290 3.5873 16 1 3.6447 -1.1411 3.4181 17 6 1.6620 -1.8323 4.0318 18 6 1.7062 -1.7819 5.5437 19 8 1.2974 -2.6547 6.2799 20 7 2.2649 -0.6294 5.9520 21 6 2.4705 -0.2622 7.3553 22 6 3.3229 -1.3357 8.0630 23 6 2.7169 -1.4248 9.4857 24 6 1.1991 -1.2649 9.2213 25 6 1.1202 -0.2172 8.0917 26 6 2.6427 0.2133 4.8115 27 1 -0.3633 0.5890 -0.8422 28 1 -0.3633 0.4348 0.9311 29 1 -0.3634 -1.0238 -0.0891 30 1 2.9363 -0.1045 -4.2556 31 1 2.2490 -1.6319 1.1524 32 1 0.6569 -1.6119 3.6722 33 1 1.9917 -2.8070 3.6722 34 1 2.9630 0.7082 7.4186 35 1 3.2339 -2.2931 7.5498 36 1 4.3662 -1.0235 8.1116 37 1 3.0869 -0.6150 10.1145 38 1 2.9305 -2.3939 9.9366 39 1 0.6926 -0.9011 10.1152 40 1 0.7670 -2.2109 8.8951 41 1 0.9576 0.7748 8.5132 42 1 0.3119 -0.4690 7.4051 43 1 3.6351 0.6364 4.9676 44 1 1.9117 1.0094 4.6705 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194715575.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:17 Heat of formation + Delta-G solvation = -106.317788 kcal Electronic energy + Delta-G solvation = -24210.033724 eV Core-core repulsion = 20739.530089 eV Total energy + Delta-G solvation = -3470.503635 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.98420 -40.42804 -38.36247 -37.31374 -36.55460 -34.40871 -33.27022 -31.34125 -29.64772 -28.68705 -28.40185 -27.31525 -24.63466 -22.60915 -22.12460 -21.57883 -21.08101 -19.76273 -19.28882 -18.21966 -17.75839 -17.34877 -16.95259 -16.38194 -16.07629 -15.78342 -15.62751 -15.27422 -14.75312 -14.66156 -14.53643 -14.48540 -14.22059 -14.09741 -13.96935 -13.19235 -13.03446 -12.80730 -12.75260 -12.57271 -12.49049 -12.36240 -12.25885 -12.03966 -11.94110 -11.86850 -11.82968 -11.46648 -11.21624 -10.95097 -10.81751 -10.55538 -9.80975 -9.66084 -8.37275 -6.43747 1.31465 1.36353 1.45985 1.52839 1.71141 1.92471 2.28598 2.43336 3.03324 3.25905 3.38723 3.66955 3.69169 3.85538 3.87315 4.02780 4.25487 4.39983 4.49122 4.49799 4.50475 4.58125 4.60698 4.63821 4.74798 4.78215 4.81059 4.85254 4.90641 4.96296 5.02065 5.08367 5.11804 5.21580 5.26641 5.39180 5.47018 5.47880 5.71777 5.75474 6.10256 6.13135 6.62466 6.89713 7.14630 7.22399 7.44312 8.77691 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.036882 B = 0.003201 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.001954 B = 8745.075695 C = 8934.719224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.234 3.766 3 H 0.033 0.967 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.032 3.968 7 N -0.931 5.931 8 Si 0.927 3.073 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.255 1.255 12 N -0.699 5.699 13 C 0.515 3.485 14 O -0.588 6.588 15 C -0.110 4.110 16 H 0.143 0.857 17 C -0.140 4.140 18 C 0.516 3.484 19 O -0.559 6.559 20 N -0.609 5.609 21 C 0.145 3.855 22 C -0.133 4.133 23 C -0.115 4.115 24 C -0.120 4.120 25 C -0.132 4.132 26 C 0.120 3.880 27 H 0.045 0.955 28 H 0.038 0.962 29 H 0.056 0.944 30 H 0.270 0.730 31 H 0.407 0.593 32 H 0.102 0.898 33 H 0.128 0.872 34 H 0.116 0.884 35 H 0.053 0.947 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.045 0.955 41 H 0.087 0.913 42 H 0.042 0.958 43 H 0.106 0.894 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.729 0.839 23.518 23.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.130 3.870 3 H 0.051 0.949 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.169 4.169 7 N -0.570 5.570 8 Si 0.752 3.248 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.179 1.179 12 N -0.347 5.347 13 C 0.301 3.699 14 O -0.470 6.470 15 C -0.132 4.132 16 H 0.161 0.839 17 C -0.181 4.181 18 C 0.304 3.696 19 O -0.438 6.438 20 N -0.341 5.341 21 C 0.044 3.956 22 C -0.171 4.171 23 C -0.152 4.152 24 C -0.157 4.157 25 C -0.170 4.170 26 C -0.003 4.003 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.243 0.757 32 H 0.120 0.880 33 H 0.146 0.854 34 H 0.134 0.866 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.064 0.936 41 H 0.105 0.895 42 H 0.061 0.939 43 H 0.125 0.875 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.377 1.272 23.786 23.860 hybrid contribution -0.043 0.216 -0.900 0.927 sum 1.335 1.488 22.886 22.973 Atomic orbital electron populations 1.22123 0.97261 1.01239 0.99491 1.18872 0.91832 0.93220 0.83029 0.94900 1.21210 1.44202 0.94847 0.96155 0.92465 1.25627 0.93798 1.02438 0.94996 1.69980 1.46716 1.37797 1.02504 0.86050 0.79817 0.81369 0.77573 1.19677 1.20687 1.17913 1.46357 1.64683 1.14536 1.09139 1.20633 0.77393 0.86858 0.84980 1.90649 1.52953 1.17719 1.85640 1.22189 1.02547 0.96425 0.92033 0.83916 1.22358 1.01595 1.01445 0.92675 1.20970 0.76221 0.81359 0.91007 1.90686 1.49738 1.41761 1.61632 1.48578 1.60191 1.18536 1.06838 1.21943 0.96157 0.99732 0.77811 1.22710 0.99547 0.98517 0.96315 1.22415 0.94468 1.02475 0.95882 1.22267 0.97353 0.98286 0.97842 1.22496 0.96428 1.00474 0.97621 1.22002 1.03230 0.92598 0.82464 0.93564 0.94262 0.92442 0.92075 0.75724 0.87970 0.85413 0.86558 0.92856 0.89668 0.89380 0.91468 0.90461 0.93607 0.89474 0.93889 0.87549 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.80 9.47 71.98 0.68 -5.12 16 2 C 0.23 10.35 2.22 44.25 0.10 10.45 16 3 H 0.03 1.59 4.73 -2.39 -0.01 1.58 16 4 C -0.53 -27.18 9.05 25.60 0.23 -26.95 16 5 H 0.06 3.15 8.06 -2.91 -0.02 3.13 16 6 C 0.03 1.73 5.47 84.66 0.46 2.20 16 7 N -0.93 -54.30 13.96 21.45 0.30 -54.00 16 8 Si 0.93 43.02 26.99 68.60 1.85 44.88 16 9 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.26 -11.50 6.82 99.48 0.68 -10.82 16 12 N -0.70 -24.56 5.06 -446.09 -2.26 -26.82 16 13 C 0.52 16.46 7.03 87.66 0.62 17.08 16 14 O -0.59 -23.21 15.19 -3.03 -0.05 -23.25 16 15 C -0.11 -2.38 3.54 -10.48 -0.04 -2.42 16 16 H 0.14 2.37 8.14 -2.39 -0.02 2.35 16 17 C -0.14 -3.01 6.40 30.61 0.20 -2.81 16 18 C 0.52 12.93 6.85 87.92 0.60 13.54 16 19 O -0.56 -17.49 15.92 -3.03 -0.05 -17.54 16 20 N -0.61 -12.69 2.83 -789.93 -2.23 -14.92 16 21 C 0.15 2.53 3.55 45.72 0.16 2.69 16 22 C -0.13 -2.24 6.29 31.67 0.20 -2.04 16 23 C -0.11 -1.67 6.91 31.89 0.22 -1.45 16 24 C -0.12 -2.13 6.83 31.67 0.22 -1.91 16 25 C -0.13 -2.44 6.02 31.32 0.19 -2.25 16 26 C 0.12 2.42 6.65 86.83 0.58 3.00 16 27 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 28 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 31 H 0.41 12.38 8.59 -92.71 -0.80 11.58 16 32 H 0.10 2.36 7.89 -2.39 -0.02 2.34 16 33 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.12 1.47 8.09 -2.39 -0.02 1.45 16 35 H 0.05 1.21 6.45 -2.39 -0.02 1.20 16 36 H 0.08 1.11 8.14 -2.38 -0.02 1.10 16 37 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.05 1.06 8.08 -2.39 -0.02 1.04 16 41 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.04 1.03 7.37 -2.39 -0.02 1.01 16 43 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.08 1.84 7.00 -2.39 -0.02 1.83 16 Total: -1.00 -68.06 351.37 2.15 -65.91 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: 0.17 Total: 21.75 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 4.42 Total: 4.00 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -4.19 Total: -95.74 kcal Atomic # 8 Polarization: -40.70 SS G_CDS: -0.09 Total: -40.79 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.85 Total: 44.88 kcal Total: -68.06 2.15 -65.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194715575.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.409 kcal (2) G-P(sol) polarization free energy of solvation -68.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds