Wall clock time and date at job start Tue Mar 31 2020 07:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46811 * 2 1 4 4 C 1.50701 * 109.47012 * 119.99507 * 2 1 3 5 5 H 1.08006 * 119.99772 * 119.99918 * 4 2 1 6 6 C 1.37877 * 120.00512 * 300.00357 * 4 2 1 7 7 N 1.31511 * 119.99536 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00135 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47007 * 90.00085 * 8 6 4 10 10 H 1.48496 * 109.46872 * 209.99732 * 8 6 4 11 11 H 1.48499 * 109.47066 * 330.00160 * 8 6 4 12 12 N 1.46495 * 109.47157 * 239.99986 * 2 1 3 13 13 C 1.34774 * 120.00338 * 85.00221 * 12 2 1 14 14 O 1.21284 * 119.99360 * 359.97438 * 13 12 2 15 15 C 1.50691 * 120.00306 * 180.02562 * 13 12 2 16 16 H 1.09000 * 110.85434 * 297.66091 * 15 13 12 17 17 C 1.54633 * 110.97244 * 61.44836 * 15 13 12 18 18 C 1.51286 * 104.19223 * 93.35961 * 17 15 13 19 19 O 1.21281 * 124.93669 * 196.27658 * 18 17 15 20 20 N 1.34413 * 110.11759 * 16.25489 * 18 17 15 21 21 C 1.46506 * 124.35108 * 180.40819 * 20 18 17 22 22 C 1.54266 * 110.03146 * 57.18862 * 21 20 18 23 23 C 1.54886 * 104.19636 * 217.10974 * 22 21 20 24 24 C 1.54884 * 102.74871 * 37.94195 * 23 22 21 25 25 C 1.53873 * 110.03038 * 300.02432 * 21 20 18 26 26 C 1.46761 * 111.30221 * 0.67004 * 20 18 17 27 27 H 1.08999 * 109.46832 * 60.00240 * 1 2 3 28 28 H 1.08997 * 109.46956 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47250 * 300.00186 * 1 2 3 30 30 H 0.97001 * 119.99995 * 179.97438 * 7 6 4 31 31 H 0.96996 * 119.99845 * 264.99716 * 12 2 1 32 32 H 1.08992 * 110.48213 * 334.68615 * 17 15 13 33 33 H 1.08991 * 110.60105 * 212.09127 * 17 15 13 34 34 H 1.09000 * 110.01868 * 178.63235 * 21 20 18 35 35 H 1.08998 * 110.48638 * 335.78899 * 22 21 20 36 36 H 1.09001 * 110.48707 * 98.42986 * 22 21 20 37 37 H 1.09004 * 110.75377 * 279.62714 * 23 22 21 38 38 H 1.09002 * 110.75623 * 156.26319 * 23 22 21 39 39 H 1.09008 * 110.48289 * 203.37850 * 24 23 22 40 40 H 1.09002 * 110.48692 * 80.74044 * 24 23 22 41 41 H 1.08998 * 110.03454 * 238.56906 * 25 21 20 42 42 H 1.09004 * 110.03169 * 0.02562 * 25 21 20 43 43 H 1.09008 * 110.24430 * 101.71808 * 26 20 18 44 44 H 1.09005 * 110.24778 * 223.71735 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9436 0.8302 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.6296 -0.5457 4.4125 10 1 1.3431 -0.9491 5.1120 11 1 2.4859 -2.5661 3.7120 12 7 2.0184 -0.6906 -1.1961 13 6 2.1472 -0.0183 -2.3571 14 8 1.8583 1.1584 -2.4116 15 6 2.6489 -0.7288 -3.5876 16 1 3.6643 -1.0954 -3.4371 17 6 1.6984 -1.8810 -3.9877 18 6 0.7585 -1.2540 -4.9939 19 8 -0.3014 -1.7283 -5.3437 20 7 1.2689 -0.0945 -5.4432 21 6 0.6104 0.7745 -6.4218 22 6 -0.7871 1.1816 -5.9109 23 6 -1.6681 1.1957 -7.1847 24 6 -1.1315 -0.0172 -7.9847 25 6 0.3914 0.0122 -7.7404 26 6 2.5735 0.1860 -4.8323 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 0.7089 1.1615 3.4844 31 1 2.2491 -1.6317 -1.1525 32 1 1.1447 -2.2376 -3.1193 33 1 2.2568 -2.6977 -4.4449 34 1 1.2169 1.6624 -6.6001 35 1 -1.1609 0.4480 -5.1966 36 1 -0.7542 2.1730 -5.4589 37 1 -1.5249 2.1207 -7.7432 38 1 -2.7185 1.0560 -6.9295 39 1 -1.3500 0.0993 -9.0463 40 1 -1.5609 -0.9445 -7.6054 41 1 0.8909 0.5306 -8.5588 42 1 0.7747 -1.0044 -7.6521 43 1 3.3761 -0.0543 -5.5297 44 1 2.6330 1.2328 -4.5339 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194715590.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:21 Heat of formation + Delta-G solvation = -84.471558 kcal Electronic energy + Delta-G solvation = -24655.267716 eV Core-core repulsion = 21185.711404 eV Total energy + Delta-G solvation = -3469.556312 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.88503 -38.83729 -37.33465 -35.98613 -34.76907 -32.65669 -31.86687 -28.97469 -28.73854 -27.58219 -27.33076 -25.28040 -23.38846 -21.53648 -20.77886 -20.63051 -19.39861 -18.66695 -17.61551 -16.93010 -16.12024 -15.82348 -15.32542 -15.12566 -14.89828 -14.49321 -14.18463 -14.08286 -13.62431 -13.39680 -13.20320 -13.03572 -12.51993 -12.34028 -11.84898 -11.70297 -11.65997 -11.53582 -11.32798 -11.16962 -11.09439 -11.06388 -10.99599 -10.87205 -10.74762 -10.59342 -10.33125 -10.25698 -9.53803 -9.11785 -9.06494 -8.59897 -8.57560 -7.97514 -6.14809 -4.24462 2.68674 3.03481 3.22447 3.23769 3.29804 3.31540 3.90922 4.32000 4.33328 4.41028 4.56743 4.64019 4.83131 4.90788 5.14967 5.19110 5.26664 5.36329 5.41882 5.47821 5.48632 5.52661 5.63767 5.65456 5.77175 5.83201 5.85853 5.89868 5.96425 6.12579 6.21977 6.36557 6.73889 6.80423 6.94861 7.12555 7.21250 7.40420 7.51544 7.66027 7.87813 8.12118 8.28749 8.59732 8.73683 9.04346 9.43108 10.91145 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029415 B = 0.003555 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.681799 B = 7874.824443 C = 8132.601532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.705 5.705 13 C 0.508 3.492 14 O -0.548 6.548 15 C -0.127 4.127 16 H 0.120 0.880 17 C -0.149 4.149 18 C 0.520 3.480 19 O -0.528 6.528 20 N -0.609 5.609 21 C 0.156 3.844 22 C -0.135 4.135 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.129 4.129 26 C 0.116 3.884 27 H 0.013 0.987 28 H 0.026 0.974 29 H 0.090 0.910 30 H 0.265 0.735 31 H 0.389 0.611 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.497 -2.614 -18.418 18.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.164 3.836 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.352 5.352 13 C 0.292 3.708 14 O -0.426 6.426 15 C -0.149 4.149 16 H 0.138 0.862 17 C -0.189 4.189 18 C 0.308 3.692 19 O -0.405 6.405 20 N -0.342 5.342 21 C 0.054 3.946 22 C -0.173 4.173 23 C -0.158 4.158 24 C -0.157 4.157 25 C -0.168 4.168 26 C -0.008 4.008 27 H 0.032 0.968 28 H 0.045 0.955 29 H 0.108 0.892 30 H 0.075 0.925 31 H 0.222 0.778 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.606 -1.834 -18.500 18.659 hybrid contribution 0.576 -0.887 1.037 1.481 sum 2.182 -2.721 -17.462 17.807 Atomic orbital electron populations 1.22069 0.98417 0.99154 1.00859 1.18756 0.91028 0.93938 0.79914 0.93355 1.21208 1.32548 1.13276 0.90304 0.92038 1.24891 0.94762 0.94954 0.99089 1.69902 1.35738 1.22452 1.23927 0.86441 0.78585 0.79851 0.82180 1.20561 1.21068 1.19816 1.46498 1.64698 1.13566 1.10439 1.20003 0.78911 0.87436 0.84483 1.90659 1.51070 1.16028 1.84873 1.22390 1.01687 0.96276 0.94591 0.86242 1.22393 0.97927 0.98089 1.00504 1.20717 0.86036 0.80893 0.81573 1.90689 1.22395 1.66126 1.61293 1.48362 1.20652 1.22104 1.43117 1.21626 0.93927 0.91980 0.87097 1.22721 0.94127 1.02125 0.98349 1.22411 0.99369 0.98002 0.95992 1.22287 0.94915 0.99253 0.99238 1.22477 0.97259 1.00832 0.96226 1.22054 0.84527 1.01894 0.92298 0.96759 0.95460 0.89151 0.92545 0.77846 0.87461 0.87196 0.89129 0.90159 0.91263 0.91681 0.91497 0.92131 0.90863 0.91543 0.91336 0.90739 0.88455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.26 37.16 0.34 -3.32 16 2 C 0.27 6.62 2.56 -69.08 -0.18 6.44 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -13.91 8.73 -34.44 -0.30 -14.21 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.71 11.32 55.43 0.63 -24.08 16 8 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 12 N -0.70 -13.93 4.79 -54.93 -0.26 -14.19 16 13 C 0.51 9.36 7.13 -10.99 -0.08 9.28 16 14 O -0.55 -12.29 15.20 5.55 0.08 -12.21 16 15 C -0.13 -1.59 3.54 -90.04 -0.32 -1.91 16 16 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 17 C -0.15 -1.81 6.39 -26.74 -0.17 -1.98 16 18 C 0.52 7.79 6.84 -10.86 -0.07 7.72 16 19 O -0.53 -9.42 15.92 5.56 0.09 -9.34 16 20 N -0.61 -8.05 2.83 -163.45 -0.46 -8.51 16 21 C 0.16 1.88 3.55 -66.81 -0.24 1.64 16 22 C -0.13 -1.80 6.29 -25.07 -0.16 -1.96 16 23 C -0.12 -1.30 6.91 -24.74 -0.17 -1.48 16 24 C -0.12 -1.29 6.83 -25.08 -0.17 -1.46 16 25 C -0.13 -1.39 6.02 -25.61 -0.15 -1.54 16 26 C 0.12 1.35 6.70 -3.03 -0.02 1.33 16 27 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.39 6.57 8.36 -40.82 -0.34 6.23 16 32 H 0.11 1.42 7.51 -51.93 -0.39 1.03 16 33 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.09 0.94 8.09 -51.93 -0.42 0.52 16 35 H 0.08 1.34 6.45 -51.93 -0.33 1.00 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 40 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.82 7.37 -51.93 -0.38 0.44 16 43 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 44 H 0.10 1.30 6.97 -51.93 -0.36 0.94 16 LS Contribution 350.90 15.07 5.29 5.29 Total: -1.00 -32.00 350.90 -8.57 -40.56 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -7.13 Total: 6.88 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -1.78 Total: 0.22 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: -0.10 Total: -46.78 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: 0.17 Total: -21.55 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.00 -8.57 -40.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194715590.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.907 kcal (2) G-P(sol) polarization free energy of solvation -31.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds