Wall clock time and date at job start Tue Mar 31 2020 07:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46811 * 2 1 4 4 C 1.50701 * 109.47012 * 119.99507 * 2 1 3 5 5 H 1.08006 * 119.99772 * 119.99918 * 4 2 1 6 6 C 1.37877 * 120.00512 * 300.00357 * 4 2 1 7 7 N 1.31511 * 119.99536 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00135 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47007 * 90.00085 * 8 6 4 10 10 H 1.48496 * 109.46872 * 209.99732 * 8 6 4 11 11 H 1.48499 * 109.47066 * 330.00160 * 8 6 4 12 12 N 1.46495 * 109.47157 * 239.99986 * 2 1 3 13 13 C 1.34774 * 120.00338 * 85.00221 * 12 2 1 14 14 O 1.21284 * 119.99360 * 359.97438 * 13 12 2 15 15 C 1.50691 * 120.00306 * 180.02562 * 13 12 2 16 16 H 1.09000 * 110.85434 * 297.66091 * 15 13 12 17 17 C 1.54633 * 110.97244 * 61.44836 * 15 13 12 18 18 C 1.51286 * 104.19223 * 93.35961 * 17 15 13 19 19 O 1.21281 * 124.93669 * 196.27658 * 18 17 15 20 20 N 1.34413 * 110.11759 * 16.25489 * 18 17 15 21 21 C 1.46506 * 124.35108 * 180.40819 * 20 18 17 22 22 C 1.54266 * 110.03146 * 57.18862 * 21 20 18 23 23 C 1.54886 * 104.19636 * 217.10974 * 22 21 20 24 24 C 1.54884 * 102.74871 * 37.94195 * 23 22 21 25 25 C 1.53873 * 110.03038 * 300.02432 * 21 20 18 26 26 C 1.46761 * 111.30221 * 0.67004 * 20 18 17 27 27 H 1.08999 * 109.46832 * 60.00240 * 1 2 3 28 28 H 1.08997 * 109.46956 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47250 * 300.00186 * 1 2 3 30 30 H 0.97001 * 119.99995 * 179.97438 * 7 6 4 31 31 H 0.96996 * 119.99845 * 264.99716 * 12 2 1 32 32 H 1.08992 * 110.48213 * 334.68615 * 17 15 13 33 33 H 1.08991 * 110.60105 * 212.09127 * 17 15 13 34 34 H 1.09000 * 110.01868 * 178.63235 * 21 20 18 35 35 H 1.08998 * 110.48638 * 335.78899 * 22 21 20 36 36 H 1.09001 * 110.48707 * 98.42986 * 22 21 20 37 37 H 1.09004 * 110.75377 * 279.62714 * 23 22 21 38 38 H 1.09002 * 110.75623 * 156.26319 * 23 22 21 39 39 H 1.09008 * 110.48289 * 203.37850 * 24 23 22 40 40 H 1.09002 * 110.48692 * 80.74044 * 24 23 22 41 41 H 1.08998 * 110.03454 * 238.56906 * 25 21 20 42 42 H 1.09004 * 110.03169 * 0.02562 * 25 21 20 43 43 H 1.09008 * 110.24430 * 101.71808 * 26 20 18 44 44 H 1.09005 * 110.24778 * 223.71735 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9436 0.8302 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.6296 -0.5457 4.4125 10 1 1.3431 -0.9491 5.1120 11 1 2.4859 -2.5661 3.7120 12 7 2.0184 -0.6906 -1.1961 13 6 2.1472 -0.0183 -2.3571 14 8 1.8583 1.1584 -2.4116 15 6 2.6489 -0.7288 -3.5876 16 1 3.6643 -1.0954 -3.4371 17 6 1.6984 -1.8810 -3.9877 18 6 0.7585 -1.2540 -4.9939 19 8 -0.3014 -1.7283 -5.3437 20 7 1.2689 -0.0945 -5.4432 21 6 0.6104 0.7745 -6.4218 22 6 -0.7871 1.1816 -5.9109 23 6 -1.6681 1.1957 -7.1847 24 6 -1.1315 -0.0172 -7.9847 25 6 0.3914 0.0122 -7.7404 26 6 2.5735 0.1860 -4.8323 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 0.7089 1.1615 3.4844 31 1 2.2491 -1.6317 -1.1525 32 1 1.1447 -2.2376 -3.1193 33 1 2.2568 -2.6977 -4.4449 34 1 1.2169 1.6624 -6.6001 35 1 -1.1609 0.4480 -5.1966 36 1 -0.7542 2.1730 -5.4589 37 1 -1.5249 2.1207 -7.7432 38 1 -2.7185 1.0560 -6.9295 39 1 -1.3500 0.0993 -9.0463 40 1 -1.5609 -0.9445 -7.6054 41 1 0.8909 0.5306 -8.5588 42 1 0.7747 -1.0044 -7.6521 43 1 3.3761 -0.0543 -5.5297 44 1 2.6330 1.2328 -4.5339 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194715590.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:20 Heat of formation + Delta-G solvation = -105.654603 kcal Electronic energy + Delta-G solvation = -24656.186282 eV Core-core repulsion = 21185.711404 eV Total energy + Delta-G solvation = -3470.474878 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.00226 -40.28090 -38.35886 -37.26610 -36.53790 -34.40058 -33.11010 -30.78168 -29.67232 -28.60756 -28.36436 -27.35598 -24.72964 -22.66833 -22.29741 -21.59550 -20.97263 -19.74764 -19.08136 -18.01597 -17.74257 -17.19312 -16.75558 -16.51976 -16.01455 -15.89815 -15.60880 -15.26951 -14.86555 -14.60139 -14.42618 -14.27568 -14.14345 -13.80268 -13.40404 -13.01346 -12.88154 -12.86493 -12.79766 -12.58315 -12.53708 -12.30178 -12.27242 -12.12619 -12.05434 -11.98424 -11.87290 -11.47100 -11.12786 -10.72029 -10.65148 -10.55537 -9.75501 -9.61865 -8.17860 -6.35474 1.45567 1.46138 1.56789 1.57929 1.78507 2.07295 2.34337 2.59237 3.12970 3.32389 3.38475 3.65277 3.68597 3.82449 3.92244 4.05091 4.37718 4.43965 4.47103 4.51646 4.56976 4.62642 4.69278 4.73212 4.75616 4.83776 4.87372 4.90954 4.92268 4.97475 5.06976 5.08511 5.18029 5.24888 5.41405 5.45824 5.60927 5.66186 5.74900 5.88526 6.08230 6.18713 6.73116 6.95812 7.19715 7.32600 7.55936 8.88563 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029415 B = 0.003555 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.681799 B = 7874.824443 C = 8132.601532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.273 3.727 3 H 0.000 1.000 4 C -0.545 4.545 5 H 0.077 0.923 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.258 1.258 12 N -0.703 5.703 13 C 0.501 3.499 14 O -0.594 6.594 15 C -0.112 4.112 16 H 0.168 0.832 17 C -0.140 4.140 18 C 0.504 3.496 19 O -0.569 6.569 20 N -0.610 5.610 21 C 0.148 3.852 22 C -0.140 4.140 23 C -0.114 4.114 24 C -0.118 4.118 25 C -0.121 4.121 26 C 0.115 3.885 27 H 0.003 0.997 28 H 0.036 0.964 29 H 0.065 0.935 30 H 0.265 0.735 31 H 0.406 0.594 32 H 0.094 0.906 33 H 0.154 0.846 34 H 0.112 0.888 35 H 0.038 0.962 36 H 0.062 0.938 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.085 0.915 40 H 0.044 0.956 41 H 0.096 0.904 42 H 0.055 0.945 43 H 0.124 0.876 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.835 -4.146 -19.947 20.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.169 3.831 3 H 0.018 0.982 4 C -0.583 4.583 5 H 0.095 0.905 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.797 3.203 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.182 1.182 12 N -0.351 5.351 13 C 0.287 3.713 14 O -0.476 6.476 15 C -0.133 4.133 16 H 0.185 0.815 17 C -0.180 4.180 18 C 0.292 3.708 19 O -0.449 6.449 20 N -0.342 5.342 21 C 0.046 3.954 22 C -0.179 4.179 23 C -0.152 4.152 24 C -0.155 4.155 25 C -0.159 4.159 26 C -0.008 4.008 27 H 0.022 0.978 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.242 0.758 32 H 0.112 0.888 33 H 0.172 0.828 34 H 0.130 0.870 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.103 0.897 40 H 0.063 0.937 41 H 0.115 0.885 42 H 0.074 0.926 43 H 0.141 0.859 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.980 -3.389 -20.056 20.726 hybrid contribution -0.195 -0.323 1.496 1.543 sum 3.785 -3.711 -18.560 19.302 Atomic orbital electron populations 1.21892 0.98986 0.99096 0.99107 1.18286 0.90520 0.92065 0.82216 0.98202 1.21563 1.32497 1.13606 0.90656 0.90475 1.25828 0.94855 0.95582 1.02459 1.70060 1.37057 1.24084 1.24578 0.85330 0.77743 0.79270 0.77915 1.20176 1.21298 1.18223 1.46228 1.64946 1.14288 1.09678 1.21105 0.77479 0.87079 0.85601 1.90643 1.52725 1.18470 1.85739 1.22411 1.03686 0.95847 0.91342 0.81452 1.22440 0.97370 0.98811 0.99404 1.21300 0.85985 0.81470 0.82001 1.90667 1.24097 1.67312 1.62789 1.48539 1.21220 1.21573 1.42900 1.21847 0.93144 0.92941 0.87492 1.22706 0.96073 1.00365 0.98723 1.22411 0.98498 0.99319 0.94948 1.22264 0.95157 0.97687 1.00434 1.22435 0.97046 1.00214 0.96221 1.22266 0.85007 1.00695 0.92786 0.97751 0.94453 0.91588 0.92623 0.75841 0.88750 0.82790 0.86994 0.94353 0.91946 0.89155 0.92145 0.89650 0.93746 0.88537 0.92598 0.85860 0.90319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.88 9.26 71.98 0.67 -6.21 16 2 C 0.27 13.98 2.56 44.25 0.11 14.10 16 3 H 0.00 0.00 7.58 -2.39 -0.02 -0.01 16 4 C -0.55 -28.32 8.73 25.60 0.22 -28.09 16 5 H 0.08 3.68 7.74 -2.91 -0.02 3.66 16 6 C 0.01 0.67 5.30 84.66 0.45 1.12 16 7 N -0.92 -52.84 11.32 21.45 0.24 -52.60 16 8 Si 0.97 41.52 29.54 68.60 2.03 43.54 16 9 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 10 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 12 N -0.70 -27.58 4.79 -446.10 -2.14 -29.72 16 13 C 0.50 18.24 7.13 87.65 0.62 18.87 16 14 O -0.59 -27.48 15.20 -3.04 -0.05 -27.53 16 15 C -0.11 -2.45 3.54 -10.42 -0.04 -2.49 16 16 H 0.17 2.18 8.14 -2.39 -0.02 2.16 16 17 C -0.14 -3.04 6.39 30.59 0.20 -2.85 16 18 C 0.50 14.74 6.84 87.90 0.60 15.34 16 19 O -0.57 -20.79 15.92 -3.03 -0.05 -20.84 16 20 N -0.61 -15.31 2.83 -789.64 -2.23 -17.55 16 21 C 0.15 3.39 3.55 45.71 0.16 3.55 16 22 C -0.14 -3.86 6.29 31.67 0.20 -3.66 16 23 C -0.11 -2.43 6.91 31.88 0.22 -2.21 16 24 C -0.12 -2.44 6.83 31.67 0.22 -2.22 16 25 C -0.12 -2.35 6.02 31.32 0.19 -2.16 16 26 C 0.11 2.35 6.70 86.90 0.58 2.94 16 27 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 28 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.07 3.76 6.07 -2.38 -0.01 3.74 16 30 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 31 H 0.41 13.06 8.36 -92.71 -0.77 12.28 16 32 H 0.09 2.35 7.51 -2.39 -0.02 2.34 16 33 H 0.15 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.11 2.06 8.09 -2.39 -0.02 2.04 16 35 H 0.04 1.37 6.45 -2.39 -0.02 1.35 16 36 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.04 1.17 8.08 -2.39 -0.02 1.15 16 41 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.06 1.25 7.37 -2.39 -0.02 1.23 16 43 H 0.12 1.44 8.14 -2.38 -0.02 1.42 16 44 H 0.08 1.98 6.97 -2.38 -0.02 1.96 16 Total: -1.00 -75.11 350.90 2.43 -72.68 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: 0.22 Total: 26.00 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 4.41 Total: 6.02 kcal Atomic # 7 Polarization: -95.74 SS G_CDS: -4.13 Total: -99.87 kcal Atomic # 8 Polarization: -48.28 SS G_CDS: -0.09 Total: -48.37 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.54 kcal Total: -75.11 2.43 -72.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194715590.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.972 kcal (2) G-P(sol) polarization free energy of solvation -75.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds