Wall clock time and date at job start Tue Mar 31 2020 06:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.49157 * 2 1 4 4 C 1.53013 * 109.47831 * 239.96795 * 2 1 3 5 5 C 1.53006 * 109.50224 * 179.53700 * 4 2 1 6 6 H 1.09001 * 109.48133 * 300.49833 * 5 4 2 7 7 C 1.52992 * 109.47996 * 180.46506 * 5 4 2 8 8 C 1.53084 * 109.42262 * 60.47728 * 5 4 2 9 9 C 1.52468 * 109.59018 * 300.86448 * 8 5 4 10 10 C 1.52473 * 110.75179 * 58.55423 * 9 8 5 11 11 N 1.46865 * 110.48059 * 181.30232 * 9 8 5 12 12 C 1.34676 * 106.42111 * 118.54637 * 11 9 8 13 13 O 1.21538 * 123.78448 * 179.97438 * 12 11 9 14 14 N 1.33861 * 112.42303 * 0.02562 * 12 11 9 15 15 C 1.46501 * 124.19749 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.46740 * 89.97179 * 15 14 12 17 17 C 1.50701 * 109.46783 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00202 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99959 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99780 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99996 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47070 * 90.00138 * 21 19 17 23 23 H 1.48506 * 109.46978 * 209.99731 * 21 19 17 24 24 H 1.48493 * 109.47192 * 329.99940 * 21 19 17 25 25 C 1.34920 * 111.60989 * 359.97438 * 14 12 11 26 26 O 1.21227 * 127.25529 * 180.02562 * 25 14 12 27 27 H 1.09001 * 109.47401 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47194 * 300.02915 * 1 2 3 29 29 H 1.09003 * 109.46966 * 60.03080 * 1 2 3 30 30 H 1.09001 * 109.46617 * 59.53301 * 4 2 1 31 31 H 1.08998 * 109.46454 * 299.54319 * 4 2 1 32 32 H 1.08997 * 109.47276 * 60.00105 * 7 5 4 33 33 H 1.09002 * 109.47157 * 180.02562 * 7 5 4 34 34 H 1.08998 * 109.47248 * 299.99904 * 7 5 4 35 35 H 1.09010 * 109.44728 * 60.89841 * 8 5 4 36 36 H 1.08999 * 109.45109 * 180.82079 * 8 5 4 37 37 H 1.09000 * 109.44563 * 181.39970 * 10 9 8 38 38 H 1.08997 * 109.45054 * 61.47344 * 10 9 8 39 39 H 0.97003 * 126.78755 * 298.52812 * 11 9 8 40 40 H 1.08989 * 109.47293 * 209.97547 * 15 14 12 41 41 H 1.08998 * 109.46910 * 329.97935 * 15 14 12 42 42 H 1.09001 * 109.47219 * 300.00423 * 16 15 14 43 43 H 1.08998 * 109.46802 * 60.00690 * 16 15 14 44 44 H 0.97001 * 119.99950 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0403 -0.7220 -1.2489 5 6 3.5703 -0.7122 -1.2553 6 1 3.9273 0.3177 -1.2512 7 6 4.0798 -1.4241 -2.5100 8 6 4.0892 -1.4371 -0.0108 9 6 3.5650 -0.7426 1.2412 10 6 2.0404 -0.7222 1.2495 11 7 4.0767 -1.4043 2.4483 12 6 4.8042 -0.4829 3.1082 13 8 5.3750 -0.6986 4.1593 14 7 4.8271 0.6973 2.4771 15 6 5.5412 1.8791 2.9667 16 6 6.9672 1.8793 2.4121 17 6 7.7020 3.0947 2.9162 18 1 7.2021 3.7965 3.5673 19 6 9.0125 3.3107 2.5462 20 7 9.6215 2.4557 1.7538 21 14 9.9231 4.8175 3.1705 22 1 10.5990 4.4918 4.4520 23 1 10.9366 5.2339 2.1682 24 1 8.9576 5.9247 3.3875 25 6 4.1119 0.6633 1.3336 26 8 3.9436 1.5693 0.5460 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5143 0.8897 29 1 -0.3633 0.5134 -0.8903 30 1 1.6701 -0.2135 -2.1391 31 1 1.6836 -1.7520 -1.2442 32 1 3.7096 -0.9083 -3.3960 33 1 5.1698 -1.4174 -2.5142 34 1 3.7231 -2.4540 -2.5136 35 1 3.7449 -2.4714 -0.0233 36 1 5.1790 -1.4178 -0.0075 37 1 1.6893 -0.2001 2.1395 38 1 1.6638 -1.7451 1.2569 39 1 3.9212 -2.3233 2.7172 40 1 5.0229 2.7794 2.6367 41 1 5.5750 1.8579 4.0559 42 1 7.4855 0.9790 2.7421 43 1 6.9334 1.9006 1.3229 44 1 10.5436 2.6075 1.4937 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245601896.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:10 Heat of formation + Delta-G solvation = -75.497673 kcal Electronic energy + Delta-G solvation = -25167.686158 eV Core-core repulsion = 21698.518983 eV Total energy + Delta-G solvation = -3469.167175 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.47084 -39.05740 -37.77922 -35.75651 -34.87213 -33.68232 -32.90989 -30.25726 -29.79998 -26.75942 -26.70201 -25.54379 -23.79658 -22.24286 -21.34241 -20.78976 -20.44782 -19.11822 -17.64528 -16.74783 -16.22584 -15.99005 -15.40530 -15.13174 -14.98213 -14.78722 -14.46852 -14.23959 -14.01565 -13.63146 -12.98163 -12.88518 -12.70958 -12.67202 -12.38365 -12.32440 -12.10028 -11.97709 -11.68549 -11.53079 -10.98253 -10.95478 -10.89541 -10.75217 -10.70340 -10.37593 -10.26081 -10.08553 -10.04847 -9.53647 -9.30316 -9.22501 -8.84586 -8.38153 -6.03042 -4.06768 1.94127 2.61655 3.32160 3.33206 3.38956 3.42140 3.43325 4.05507 4.40331 4.43713 4.45496 4.69594 4.81497 4.86492 5.08442 5.22765 5.25218 5.33658 5.41056 5.47635 5.51281 5.53679 5.60464 5.65692 5.66585 5.74577 5.81324 5.96401 6.02669 6.05628 6.11441 6.16681 6.21500 6.23336 6.32706 6.45051 6.66758 6.96046 7.40893 7.58626 7.72599 7.76311 7.94045 8.29094 8.48933 8.98287 9.57239 11.08688 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019813 B = 0.004312 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.894291 B = 6491.750666 C = 6871.765356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 H 0.092 0.908 4 C -0.103 4.103 5 C -0.102 4.102 6 H 0.093 0.907 7 C -0.144 4.144 8 C -0.106 4.106 9 C 0.122 3.878 10 C -0.103 4.103 11 N -0.729 5.729 12 C 0.701 3.299 13 O -0.540 6.540 14 N -0.569 5.569 15 C 0.119 3.881 16 C 0.013 3.987 17 C -0.522 4.522 18 H 0.059 0.941 19 C 0.060 3.940 20 N -0.892 5.892 21 Si 0.897 3.103 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.272 1.272 25 C 0.530 3.470 26 O -0.461 6.461 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.434 0.566 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.023 0.977 43 H 0.021 0.979 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.307 -10.327 -6.306 21.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 H 0.110 0.890 4 C -0.141 4.141 5 C -0.121 4.121 6 H 0.111 0.889 7 C -0.201 4.201 8 C -0.144 4.144 9 C 0.031 3.969 10 C -0.142 4.142 11 N -0.393 5.393 12 C 0.402 3.598 13 O -0.413 6.413 14 N -0.314 5.314 15 C 0.000 4.000 16 C -0.025 4.025 17 C -0.560 4.560 18 H 0.078 0.922 19 C -0.142 4.142 20 N -0.531 5.531 21 Si 0.725 3.275 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.197 1.197 25 C 0.316 3.684 26 O -0.330 6.330 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.277 0.723 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.042 0.958 43 H 0.039 0.961 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.849 -9.848 -6.199 21.307 hybrid contribution 0.661 0.256 0.487 0.860 sum -17.188 -9.591 -5.712 20.495 Atomic orbital electron populations 1.21784 0.94814 1.01582 1.01871 1.21291 0.95592 1.01501 0.93702 0.88994 1.21616 0.94724 1.00238 0.97510 1.21281 0.95595 1.01609 0.93573 0.88903 1.21780 1.01338 0.99976 0.97024 1.21699 1.01654 0.99495 0.91589 1.21081 0.96475 0.91527 0.87831 1.21678 0.90616 1.02408 0.99473 1.45586 1.55157 1.14330 1.24236 1.16012 0.79466 0.80841 0.83511 1.90995 1.48053 1.80585 1.21647 1.46797 1.47661 1.13858 1.23037 1.22201 0.95370 0.82450 1.00007 1.19403 0.88101 0.98238 0.96744 1.20997 0.97136 1.07662 1.30232 0.92244 1.24992 0.97518 0.96727 0.94944 1.69976 1.12174 1.36050 1.34872 0.86509 0.79554 0.82895 0.78555 1.20543 1.21167 1.19722 1.20509 0.77681 0.89400 0.80772 1.90712 1.57661 1.42127 1.42535 0.92830 0.92726 0.92409 0.91560 0.92089 0.92438 0.92430 0.92899 0.90162 0.90578 0.91035 0.90133 0.72281 0.89917 0.89769 0.95838 0.96067 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.20 37.16 0.34 -0.77 16 2 C -0.10 -0.99 2.47 -90.57 -0.22 -1.21 16 3 H 0.09 1.14 6.11 -51.93 -0.32 0.82 16 4 C -0.10 -0.93 4.47 -26.72 -0.12 -1.04 16 5 C -0.10 -1.10 2.47 -90.58 -0.22 -1.32 16 6 H 0.09 1.29 6.11 -51.93 -0.32 0.97 16 7 C -0.14 -1.34 9.19 37.15 0.34 -1.00 16 8 C -0.11 -1.17 4.38 -26.96 -0.12 -1.29 16 9 C 0.12 1.51 1.01 -133.10 -0.13 1.38 16 10 C -0.10 -1.01 4.38 -26.96 -0.12 -1.12 16 11 N -0.73 -9.40 5.88 -53.87 -0.32 -9.72 16 12 C 0.70 12.78 8.63 -87.82 -0.76 12.02 16 13 O -0.54 -11.77 17.49 5.33 0.09 -11.67 16 14 N -0.57 -10.90 2.61 -120.81 -0.32 -11.22 16 15 C 0.12 2.60 5.65 -4.04 -0.02 2.58 16 16 C 0.01 0.35 5.30 -27.88 -0.15 0.20 16 17 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 18 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 21 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 C 0.53 9.00 6.52 -10.71 -0.07 8.93 16 26 O -0.46 -8.59 13.85 5.60 0.08 -8.52 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.69 8.14 -51.92 -0.42 0.26 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.43 4.21 8.96 -40.82 -0.37 3.85 16 40 H 0.08 1.74 8.01 -51.94 -0.42 1.32 16 41 H 0.08 1.83 7.86 -51.93 -0.41 1.42 16 42 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 349.30 15.07 5.26 5.26 Total: -1.00 -33.33 349.30 -8.43 -41.76 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -7.29 Total: 0.01 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -1.66 Total: 3.71 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: 0.10 Total: -47.43 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: 0.17 Total: -20.19 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.33 -8.43 -41.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245601896.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.740 kcal (2) G-P(sol) polarization free energy of solvation -33.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds