Wall clock time and date at job start Tue Mar 31 2020 06:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.49157 * 2 1 4 4 C 1.53013 * 109.47831 * 239.96795 * 2 1 3 5 5 C 1.53006 * 109.50224 * 179.53700 * 4 2 1 6 6 H 1.09001 * 109.48133 * 300.49833 * 5 4 2 7 7 C 1.52992 * 109.47996 * 180.46506 * 5 4 2 8 8 C 1.53084 * 109.42262 * 60.47728 * 5 4 2 9 9 C 1.52468 * 109.59018 * 300.86448 * 8 5 4 10 10 C 1.52473 * 110.75179 * 58.55423 * 9 8 5 11 11 N 1.46865 * 110.48059 * 181.30232 * 9 8 5 12 12 C 1.34676 * 106.42111 * 118.54637 * 11 9 8 13 13 O 1.21538 * 123.78448 * 179.97438 * 12 11 9 14 14 N 1.33861 * 112.42303 * 0.02562 * 12 11 9 15 15 C 1.46501 * 124.19749 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.46740 * 89.97179 * 15 14 12 17 17 C 1.50701 * 109.46783 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00202 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99959 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99780 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99996 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47070 * 90.00138 * 21 19 17 23 23 H 1.48506 * 109.46978 * 209.99731 * 21 19 17 24 24 H 1.48493 * 109.47192 * 329.99940 * 21 19 17 25 25 C 1.34920 * 111.60989 * 359.97438 * 14 12 11 26 26 O 1.21227 * 127.25529 * 180.02562 * 25 14 12 27 27 H 1.09001 * 109.47401 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47194 * 300.02915 * 1 2 3 29 29 H 1.09003 * 109.46966 * 60.03080 * 1 2 3 30 30 H 1.09001 * 109.46617 * 59.53301 * 4 2 1 31 31 H 1.08998 * 109.46454 * 299.54319 * 4 2 1 32 32 H 1.08997 * 109.47276 * 60.00105 * 7 5 4 33 33 H 1.09002 * 109.47157 * 180.02562 * 7 5 4 34 34 H 1.08998 * 109.47248 * 299.99904 * 7 5 4 35 35 H 1.09010 * 109.44728 * 60.89841 * 8 5 4 36 36 H 1.08999 * 109.45109 * 180.82079 * 8 5 4 37 37 H 1.09000 * 109.44563 * 181.39970 * 10 9 8 38 38 H 1.08997 * 109.45054 * 61.47344 * 10 9 8 39 39 H 0.97003 * 126.78755 * 298.52812 * 11 9 8 40 40 H 1.08989 * 109.47293 * 209.97547 * 15 14 12 41 41 H 1.08998 * 109.46910 * 329.97935 * 15 14 12 42 42 H 1.09001 * 109.47219 * 300.00423 * 16 15 14 43 43 H 1.08998 * 109.46802 * 60.00690 * 16 15 14 44 44 H 0.97001 * 119.99950 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0403 -0.7220 -1.2489 5 6 3.5703 -0.7122 -1.2553 6 1 3.9273 0.3177 -1.2512 7 6 4.0798 -1.4241 -2.5100 8 6 4.0892 -1.4371 -0.0108 9 6 3.5650 -0.7426 1.2412 10 6 2.0404 -0.7222 1.2495 11 7 4.0767 -1.4043 2.4483 12 6 4.8042 -0.4829 3.1082 13 8 5.3750 -0.6986 4.1593 14 7 4.8271 0.6973 2.4771 15 6 5.5412 1.8791 2.9667 16 6 6.9672 1.8793 2.4121 17 6 7.7020 3.0947 2.9162 18 1 7.2021 3.7965 3.5673 19 6 9.0125 3.3107 2.5462 20 7 9.6215 2.4557 1.7538 21 14 9.9231 4.8175 3.1705 22 1 10.5990 4.4918 4.4520 23 1 10.9366 5.2339 2.1682 24 1 8.9576 5.9247 3.3875 25 6 4.1119 0.6633 1.3336 26 8 3.9436 1.5693 0.5460 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5143 0.8897 29 1 -0.3633 0.5134 -0.8903 30 1 1.6701 -0.2135 -2.1391 31 1 1.6836 -1.7520 -1.2442 32 1 3.7096 -0.9083 -3.3960 33 1 5.1698 -1.4174 -2.5142 34 1 3.7231 -2.4540 -2.5136 35 1 3.7449 -2.4714 -0.0233 36 1 5.1790 -1.4178 -0.0075 37 1 1.6893 -0.2001 2.1395 38 1 1.6638 -1.7451 1.2569 39 1 3.9212 -2.3233 2.7172 40 1 5.0229 2.7794 2.6367 41 1 5.5750 1.8579 4.0559 42 1 7.4855 0.9790 2.7421 43 1 6.9334 1.9006 1.3229 44 1 10.5436 2.6075 1.4937 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245601896.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:10 Heat of formation + Delta-G solvation = -97.559591 kcal Electronic energy + Delta-G solvation = -25168.642835 eV Core-core repulsion = 21698.518983 eV Total energy + Delta-G solvation = -3470.123851 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.79194 -40.26482 -39.05691 -37.19918 -36.47501 -34.90995 -34.45235 -31.98992 -31.07139 -27.50078 -27.49699 -27.42302 -25.19234 -24.07068 -22.54611 -21.87255 -21.57128 -20.25002 -19.09346 -18.64358 -17.76603 -17.37684 -16.57904 -16.50724 -16.37365 -16.15268 -15.93232 -15.35603 -15.06040 -14.95431 -14.89136 -14.37948 -13.78178 -13.67291 -13.49831 -13.38379 -13.18314 -12.90408 -12.79584 -12.78098 -12.72804 -12.48841 -12.16342 -12.14270 -12.02947 -11.69836 -11.66702 -11.46192 -11.26571 -11.18745 -10.73676 -10.69440 -10.64066 -10.37105 -8.27732 -6.41300 0.56582 1.21462 1.39130 1.41411 1.52652 1.94503 2.14521 2.38111 2.85276 3.06448 3.46134 3.53160 3.85689 3.98004 4.02248 4.05565 4.27327 4.37137 4.43094 4.45990 4.46732 4.54771 4.67416 4.73450 4.76518 4.80626 4.88388 4.91789 4.94413 4.97737 5.15058 5.20379 5.31224 5.32729 5.37427 5.41403 5.45490 5.47549 5.64525 5.68514 5.80213 6.04504 6.10484 6.41040 6.72513 7.09939 7.28749 8.85286 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019813 B = 0.004312 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.894291 B = 6491.750666 C = 6871.765356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.103 4.103 3 H 0.056 0.944 4 C -0.097 4.097 5 C -0.103 4.103 6 H 0.051 0.949 7 C -0.140 4.140 8 C -0.104 4.104 9 C 0.134 3.866 10 C -0.098 4.098 11 N -0.698 5.698 12 C 0.696 3.304 13 O -0.582 6.582 14 N -0.583 5.583 15 C 0.133 3.867 16 C 0.027 3.973 17 C -0.546 4.546 18 H 0.071 0.929 19 C 0.001 3.999 20 N -0.933 5.933 21 Si 0.975 3.025 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.258 1.258 25 C 0.517 3.483 26 O -0.483 6.483 27 H 0.075 0.925 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.040 0.960 34 H 0.078 0.922 35 H 0.123 0.877 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.121 0.879 39 H 0.453 0.547 40 H 0.089 0.911 41 H 0.085 0.915 42 H -0.013 1.013 43 H -0.011 1.011 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.442 -11.557 -6.601 24.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.122 4.122 3 H 0.075 0.925 4 C -0.134 4.134 5 C -0.122 4.122 6 H 0.070 0.930 7 C -0.198 4.198 8 C -0.142 4.142 9 C 0.044 3.956 10 C -0.136 4.136 11 N -0.363 5.363 12 C 0.396 3.604 13 O -0.459 6.459 14 N -0.328 5.328 15 C 0.013 3.987 16 C -0.011 4.011 17 C -0.584 4.584 18 H 0.089 0.911 19 C -0.197 4.197 20 N -0.572 5.572 21 Si 0.798 3.202 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.182 1.182 25 C 0.306 3.694 26 O -0.354 6.354 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.097 0.903 35 H 0.141 0.859 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.140 0.860 39 H 0.301 0.699 40 H 0.108 0.892 41 H 0.103 0.897 42 H 0.005 0.995 43 H 0.007 0.993 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.040 -11.123 -6.525 23.830 hybrid contribution 1.324 0.636 0.500 1.551 sum -18.716 -10.487 -6.025 22.284 Atomic orbital electron populations 1.21737 0.92844 1.03000 1.01914 1.21262 0.97132 0.99661 0.94116 0.92543 1.21598 0.92688 1.01936 0.97188 1.21250 0.97385 0.99416 0.94131 0.93014 1.21755 1.00315 1.01326 0.96370 1.21775 1.00138 1.01582 0.90728 1.21239 0.98417 0.87983 0.87965 1.21765 0.87579 1.04823 0.99431 1.45423 1.53214 1.14310 1.23370 1.16164 0.79731 0.81215 0.83250 1.90959 1.50073 1.81253 1.23572 1.46817 1.48033 1.13688 1.24245 1.21720 0.92921 0.84327 0.99766 1.19154 0.90943 0.96392 0.94641 1.21461 0.97970 1.08388 1.30629 0.91084 1.26055 0.98518 1.00261 0.94862 1.70122 1.12720 1.38271 1.36099 0.85300 0.78154 0.78637 0.78078 1.19598 1.20530 1.18216 1.21431 0.77051 0.91398 0.79539 1.90700 1.58241 1.43599 1.42828 0.90623 0.93029 0.92185 0.91198 0.88995 0.91923 0.94086 0.90343 0.85896 0.93233 0.91420 0.86037 0.69928 0.89231 0.89671 0.99462 0.99259 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.20 71.98 0.66 -1.04 16 2 C -0.10 -1.77 2.47 -10.76 -0.03 -1.79 16 3 H 0.06 1.40 6.11 -2.39 -0.01 1.38 16 4 C -0.10 -1.44 4.47 30.60 0.14 -1.30 16 5 C -0.10 -2.11 2.47 -10.77 -0.03 -2.13 16 6 H 0.05 1.50 6.11 -2.39 -0.01 1.48 16 7 C -0.14 -2.39 9.19 71.98 0.66 -1.73 16 8 C -0.10 -2.12 4.38 30.45 0.13 -1.99 16 9 C 0.13 3.16 1.01 2.57 0.00 3.16 16 10 C -0.10 -1.61 4.38 30.45 0.13 -1.48 16 11 N -0.70 -17.02 5.88 -442.69 -2.60 -19.62 16 12 C 0.70 25.83 8.63 179.37 1.55 27.38 16 13 O -0.58 -26.11 17.49 -3.83 -0.07 -26.17 16 14 N -0.58 -23.29 2.61 -773.25 -2.02 -25.31 16 15 C 0.13 6.15 5.65 86.38 0.49 6.63 16 16 C 0.03 1.52 5.30 29.85 0.16 1.68 16 17 C -0.55 -32.35 9.11 25.60 0.23 -32.11 16 18 H 0.07 3.94 7.74 -2.91 -0.02 3.92 16 19 C 0.00 0.08 5.46 84.65 0.46 0.54 16 20 N -0.93 -58.84 13.29 21.45 0.28 -58.55 16 21 Si 0.98 45.37 29.54 68.60 2.03 47.40 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 25 C 0.52 18.13 6.52 87.77 0.57 18.71 16 26 O -0.48 -19.04 13.85 -2.87 -0.04 -19.08 16 27 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.12 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.45 7.53 8.96 -92.71 -0.83 6.70 16 40 H 0.09 3.94 8.01 -2.39 -0.02 3.93 16 41 H 0.08 3.87 7.86 -2.39 -0.02 3.85 16 42 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 43 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 44 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -77.59 349.30 2.88 -74.71 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.16 Total: 12.11 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: 5.14 Total: 14.52 kcal Atomic # 7 Polarization: -99.15 SS G_CDS: -4.34 Total: -103.48 kcal Atomic # 8 Polarization: -45.14 SS G_CDS: -0.11 Total: -45.25 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -77.59 2.88 -74.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245601896.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.851 kcal (2) G-P(sol) polarization free energy of solvation -77.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds