Wall clock time and date at job start Tue Mar 31 2020 07:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47281 * 2 1 4 4 C 1.53001 * 109.47194 * 239.99145 * 2 1 3 5 5 C 1.53000 * 109.46886 * 175.00077 * 4 2 1 6 6 C 1.50703 * 109.46912 * 180.02562 * 5 4 2 7 7 C 1.34515 * 125.79060 * 90.00255 * 6 5 4 8 8 C 1.41380 * 106.83832 * 179.97438 * 7 6 5 9 9 C 1.34506 * 106.84493 * 359.97438 * 8 7 6 10 10 O 1.34306 * 125.78568 * 269.69593 * 6 5 4 11 11 N 1.46502 * 109.46861 * 119.99657 * 2 1 3 12 12 C 1.34774 * 120.00144 * 275.00142 * 11 2 1 13 13 O 1.21590 * 120.00141 * 359.97438 * 12 11 2 14 14 N 1.34776 * 120.00371 * 180.02562 * 12 11 2 15 15 C 1.46505 * 120.00416 * 180.02562 * 14 12 11 16 16 C 1.52992 * 109.47216 * 180.02562 * 15 14 12 17 17 C 1.53004 * 109.46978 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47113 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99856 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00031 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00363 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 120.00026 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46830 * 90.00189 * 22 20 18 24 24 H 1.48499 * 109.46932 * 209.99913 * 22 20 18 25 25 H 1.48497 * 109.47030 * 329.99845 * 22 20 18 26 26 H 1.09000 * 109.47237 * 300.00371 * 1 2 3 27 27 H 1.09002 * 109.46818 * 60.00551 * 1 2 3 28 28 H 1.09004 * 109.47242 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46652 * 55.00422 * 4 2 1 30 30 H 1.08992 * 109.47514 * 295.00511 * 4 2 1 31 31 H 1.09002 * 109.47398 * 300.00496 * 5 4 2 32 32 H 1.09001 * 109.47194 * 60.00677 * 5 4 2 33 33 H 1.07996 * 126.58016 * 0.03378 * 7 6 5 34 34 H 1.08006 * 126.57610 * 179.97438 * 8 7 6 35 35 H 1.08006 * 125.79583 * 179.97438 * 9 8 7 36 36 H 0.97001 * 120.00062 * 94.99942 * 11 2 1 37 37 H 0.97001 * 119.99835 * 359.97438 * 14 12 11 38 38 H 1.09011 * 109.46387 * 299.99652 * 15 14 12 39 39 H 1.08999 * 109.46965 * 59.99240 * 15 14 12 40 40 H 1.08998 * 109.47122 * 299.99486 * 16 15 14 41 41 H 1.08999 * 109.47778 * 59.99733 * 16 15 14 42 42 H 1.08998 * 109.47041 * 299.99862 * 17 16 15 43 43 H 1.08997 * 109.47275 * 59.99701 * 17 16 15 44 44 H 0.96994 * 120.00531 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5648 -0.6135 -1.3135 6 6 4.0672 -1.3235 -2.5442 7 6 4.2398 -0.7685 -3.7573 8 6 4.7237 -1.7879 -4.6090 9 6 4.8185 -2.9047 -3.8654 10 8 4.4239 -2.6164 -2.6144 11 7 2.0183 -0.6906 1.1962 12 6 2.1469 -0.0182 2.3572 13 8 1.8582 1.1617 2.4116 14 7 2.5966 -0.6533 3.4576 15 6 2.7360 0.0775 4.7197 16 6 3.2616 -0.8684 5.8013 17 6 3.4077 -0.1050 7.1192 18 6 3.9248 -1.0368 8.1847 19 1 4.1285 -2.0701 7.9459 20 6 4.1370 -0.5703 9.4647 21 7 3.8876 0.6877 9.7559 22 14 4.7774 -1.7255 10.7857 23 1 6.2619 -1.6929 10.7944 24 1 4.2650 -1.2942 12.1111 25 1 4.3141 -3.1074 10.5017 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 1.6054 -0.2619 -2.1369 30 1 1.7516 -1.7716 -1.2054 31 1 3.8532 0.4368 -1.3572 32 1 3.9995 -1.0729 -0.4258 33 1 4.0467 0.2589 -4.0284 34 1 4.9701 -1.6889 -5.6559 35 1 5.1573 -3.8691 -4.2143 36 1 2.2489 -1.6317 1.1528 37 1 2.8273 -1.5945 3.4141 38 1 3.4366 0.9019 4.5867 39 1 1.7650 0.4708 5.0209 40 1 2.5614 -1.6930 5.9344 41 1 4.2326 -1.2613 5.4999 42 1 4.1081 0.7194 6.9858 43 1 2.4369 0.2883 7.4209 44 1 4.0364 1.0159 10.6564 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264172607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:17 Heat of formation + Delta-G solvation = -45.815263 kcal Electronic energy + Delta-G solvation = -22456.759464 eV Core-core repulsion = 18988.879415 eV Total energy + Delta-G solvation = -3467.880049 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.85713 -39.95820 -37.06461 -35.22717 -33.67285 -33.30732 -32.86758 -31.47538 -30.27667 -28.27786 -26.56356 -24.40205 -23.17041 -22.06052 -21.37810 -20.74594 -20.64338 -20.34169 -18.10119 -17.63228 -16.68044 -16.28610 -16.15163 -15.47537 -15.07579 -14.81872 -14.45548 -14.29607 -14.06109 -13.95697 -13.59214 -13.23062 -13.13532 -12.84777 -12.54823 -12.32322 -12.25073 -11.87013 -11.78287 -11.62085 -11.35609 -11.08457 -10.89235 -10.70185 -10.57963 -10.23288 -10.05571 -9.83991 -9.42238 -9.20634 -9.11000 -8.75334 -8.57315 -8.35940 -6.00514 -4.03548 1.42040 2.30492 2.68720 2.84423 3.31575 3.37898 3.40584 3.40734 4.19061 4.38252 4.46733 4.56941 4.63413 4.70280 4.75621 4.84721 5.16167 5.24302 5.29679 5.35155 5.39752 5.49780 5.55157 5.63097 5.68131 5.71352 5.83287 5.84039 5.89115 6.08128 6.19248 6.21089 6.52661 6.56239 6.64790 6.83216 6.83934 7.04653 7.11283 7.65422 7.78455 7.98517 8.19022 8.39507 8.79599 9.03182 9.60484 11.10741 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021018 B = 0.002201 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.849296 B =12717.039257 C =13668.590237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.161 3.839 3 H 0.091 0.909 4 C -0.122 4.122 5 C -0.042 4.042 6 C -0.006 4.006 7 C -0.214 4.214 8 C -0.214 4.214 9 C -0.046 4.046 10 O -0.176 6.176 11 N -0.748 5.748 12 C 0.700 3.300 13 O -0.593 6.593 14 N -0.742 5.742 15 C 0.135 3.865 16 C -0.120 4.120 17 C 0.024 3.976 18 C -0.522 4.522 19 H 0.055 0.945 20 C 0.056 3.944 21 N -0.893 5.893 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.201 0.799 36 H 0.393 0.607 37 H 0.393 0.607 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.249 -6.228 -29.343 30.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.056 3.944 3 H 0.109 0.891 4 C -0.160 4.160 5 C -0.079 4.079 6 C -0.056 4.056 7 C -0.233 4.233 8 C -0.233 4.233 9 C -0.114 4.114 10 O -0.072 6.072 11 N -0.405 5.405 12 C 0.400 3.600 13 O -0.471 6.471 14 N -0.397 5.397 15 C 0.012 3.988 16 C -0.158 4.158 17 C -0.014 4.014 18 C -0.560 4.560 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.115 0.885 32 H 0.103 0.897 33 H 0.165 0.835 34 H 0.164 0.836 35 H 0.218 0.782 36 H 0.227 0.773 37 H 0.226 0.774 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.528 -5.169 -28.874 29.441 hybrid contribution 0.676 -1.451 0.430 1.657 sum -1.851 -6.620 -28.444 29.263 Atomic orbital electron populations 1.22198 0.95310 1.02062 1.02711 1.20754 0.93887 0.97326 0.82455 0.89120 1.21933 0.94047 1.01921 0.98094 1.20193 0.95611 0.99629 0.92450 1.22532 1.03152 0.82018 0.97890 1.21618 1.07665 1.01110 0.92950 1.21843 1.06945 0.93230 1.01281 1.24028 1.04773 1.00806 0.81789 1.84034 1.64481 1.27380 1.31308 1.45270 1.72557 1.13511 1.09127 1.16030 0.78440 0.85184 0.80334 1.90915 1.57195 1.14410 1.84606 1.45405 1.70564 1.13847 1.09849 1.21496 1.01211 0.95204 0.80873 1.21886 0.99632 0.98208 0.96109 1.19030 0.97507 0.95484 0.89384 1.21203 1.43884 0.96380 0.94538 0.92670 1.25035 0.95669 0.95121 0.98701 1.69963 1.48710 1.14201 1.20379 0.86581 0.79064 0.81072 0.81188 1.20673 1.21221 1.19920 0.91621 0.91801 0.92612 0.89786 0.90926 0.88549 0.89704 0.83512 0.83572 0.78227 0.77303 0.77371 0.91997 0.92013 0.92803 0.92795 0.96249 0.96241 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.48 37.16 0.35 -1.10 16 2 C 0.16 1.44 2.58 -67.93 -0.17 1.26 16 3 H 0.09 0.97 7.58 -51.93 -0.39 0.58 16 4 C -0.12 -0.80 4.74 -26.73 -0.13 -0.93 16 5 C -0.04 -0.31 5.64 -27.88 -0.16 -0.46 16 6 C -0.01 -0.05 6.57 -35.62 -0.23 -0.28 16 7 C -0.21 -1.77 10.81 -39.70 -0.43 -2.20 16 8 C -0.21 -1.62 10.91 -39.71 -0.43 -2.05 16 9 C -0.05 -0.34 12.09 29.41 0.36 0.01 16 10 O -0.18 -1.66 10.65 5.68 0.06 -1.60 16 11 N -0.75 -7.60 4.53 -58.68 -0.27 -7.86 16 12 C 0.70 10.37 8.53 -86.92 -0.74 9.63 16 13 O -0.59 -11.34 16.01 5.29 0.08 -11.25 16 14 N -0.74 -10.66 5.56 -65.22 -0.36 -11.02 16 15 C 0.14 2.42 5.67 -4.04 -0.02 2.39 16 16 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 17 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 18 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 19 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 22 Si 0.89 21.56 29.54 -169.99 -5.02 16.53 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.66 7.75 -51.93 -0.40 0.26 16 33 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.15 0.80 8.06 -52.48 -0.42 0.38 16 35 H 0.20 0.75 8.06 -52.48 -0.42 0.33 16 36 H 0.39 3.01 8.62 -40.82 -0.35 2.65 16 37 H 0.39 4.50 8.49 -40.82 -0.35 4.15 16 38 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 373.08 15.07 5.62 5.62 Total: -1.00 -34.21 373.08 -8.83 -43.03 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -7.38 Total: 1.91 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -2.30 Total: -9.19 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.11 Total: -45.06 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.15 Total: -12.85 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.21 -8.83 -43.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264172607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.785 kcal (2) G-P(sol) polarization free energy of solvation -34.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds