Wall clock time and date at job start Tue Mar 31 2020 07:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47281 * 2 1 4 4 C 1.53001 * 109.47194 * 239.99145 * 2 1 3 5 5 C 1.53000 * 109.46886 * 175.00077 * 4 2 1 6 6 C 1.50703 * 109.46912 * 180.02562 * 5 4 2 7 7 C 1.34515 * 125.79060 * 90.00255 * 6 5 4 8 8 C 1.41380 * 106.83832 * 179.97438 * 7 6 5 9 9 C 1.34506 * 106.84493 * 359.97438 * 8 7 6 10 10 O 1.34306 * 125.78568 * 269.69593 * 6 5 4 11 11 N 1.46502 * 109.46861 * 119.99657 * 2 1 3 12 12 C 1.34774 * 120.00144 * 275.00142 * 11 2 1 13 13 O 1.21590 * 120.00141 * 359.97438 * 12 11 2 14 14 N 1.34776 * 120.00371 * 180.02562 * 12 11 2 15 15 C 1.46505 * 120.00416 * 180.02562 * 14 12 11 16 16 C 1.52992 * 109.47216 * 180.02562 * 15 14 12 17 17 C 1.53004 * 109.46978 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47113 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99856 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00031 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00363 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 120.00026 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46830 * 90.00189 * 22 20 18 24 24 H 1.48499 * 109.46932 * 209.99913 * 22 20 18 25 25 H 1.48497 * 109.47030 * 329.99845 * 22 20 18 26 26 H 1.09000 * 109.47237 * 300.00371 * 1 2 3 27 27 H 1.09002 * 109.46818 * 60.00551 * 1 2 3 28 28 H 1.09004 * 109.47242 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46652 * 55.00422 * 4 2 1 30 30 H 1.08992 * 109.47514 * 295.00511 * 4 2 1 31 31 H 1.09002 * 109.47398 * 300.00496 * 5 4 2 32 32 H 1.09001 * 109.47194 * 60.00677 * 5 4 2 33 33 H 1.07996 * 126.58016 * 0.03378 * 7 6 5 34 34 H 1.08006 * 126.57610 * 179.97438 * 8 7 6 35 35 H 1.08006 * 125.79583 * 179.97438 * 9 8 7 36 36 H 0.97001 * 120.00062 * 94.99942 * 11 2 1 37 37 H 0.97001 * 119.99835 * 359.97438 * 14 12 11 38 38 H 1.09011 * 109.46387 * 299.99652 * 15 14 12 39 39 H 1.08999 * 109.46965 * 59.99240 * 15 14 12 40 40 H 1.08998 * 109.47122 * 299.99486 * 16 15 14 41 41 H 1.08999 * 109.47778 * 59.99733 * 16 15 14 42 42 H 1.08998 * 109.47041 * 299.99862 * 17 16 15 43 43 H 1.08997 * 109.47275 * 59.99701 * 17 16 15 44 44 H 0.96994 * 120.00531 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5648 -0.6135 -1.3135 6 6 4.0672 -1.3235 -2.5442 7 6 4.2398 -0.7685 -3.7573 8 6 4.7237 -1.7879 -4.6090 9 6 4.8185 -2.9047 -3.8654 10 8 4.4239 -2.6164 -2.6144 11 7 2.0183 -0.6906 1.1962 12 6 2.1469 -0.0182 2.3572 13 8 1.8582 1.1617 2.4116 14 7 2.5966 -0.6533 3.4576 15 6 2.7360 0.0775 4.7197 16 6 3.2616 -0.8684 5.8013 17 6 3.4077 -0.1050 7.1192 18 6 3.9248 -1.0368 8.1847 19 1 4.1285 -2.0701 7.9459 20 6 4.1370 -0.5703 9.4647 21 7 3.8876 0.6877 9.7559 22 14 4.7774 -1.7255 10.7857 23 1 6.2619 -1.6929 10.7944 24 1 4.2650 -1.2942 12.1111 25 1 4.3141 -3.1074 10.5017 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 1.6054 -0.2619 -2.1369 30 1 1.7516 -1.7716 -1.2054 31 1 3.8532 0.4368 -1.3572 32 1 3.9995 -1.0729 -0.4258 33 1 4.0467 0.2589 -4.0284 34 1 4.9701 -1.6889 -5.6559 35 1 5.1573 -3.8691 -4.2143 36 1 2.2489 -1.6317 1.1528 37 1 2.8273 -1.5945 3.4141 38 1 3.4366 0.9019 4.5867 39 1 1.7650 0.4708 5.0209 40 1 2.5614 -1.6930 5.9344 41 1 4.2326 -1.2613 5.4999 42 1 4.1081 0.7194 6.9858 43 1 2.4369 0.2883 7.4209 44 1 4.0364 1.0159 10.6564 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264172607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:16 Heat of formation + Delta-G solvation = -68.028647 kcal Electronic energy + Delta-G solvation = -22457.722709 eV Core-core repulsion = 18988.879415 eV Total energy + Delta-G solvation = -3468.843294 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.43599 -41.10274 -37.99788 -36.73314 -35.16683 -34.39443 -33.63488 -32.95378 -31.38471 -28.87624 -28.37821 -25.28320 -24.72596 -22.63829 -22.36510 -22.27383 -21.55929 -21.21379 -19.28163 -18.51420 -18.18342 -17.45515 -16.89749 -16.75820 -16.50318 -15.89022 -15.78762 -15.41212 -15.28873 -14.84003 -14.47379 -14.24109 -13.94840 -13.73239 -13.70022 -13.55295 -13.35519 -13.19873 -12.93129 -12.74435 -12.53371 -12.48602 -12.35225 -11.95482 -11.79207 -11.65146 -11.60199 -11.26872 -11.10275 -10.81522 -10.54456 -10.34214 -9.75304 -9.31305 -8.18443 -6.29902 0.84477 1.42150 1.43686 1.54551 1.74207 1.76431 2.15744 2.20660 2.42695 3.15112 3.36878 3.60170 3.98046 4.06634 4.10854 4.19094 4.20546 4.25653 4.30600 4.50207 4.58343 4.59024 4.67965 4.82882 4.85954 4.96983 4.98080 4.99340 5.05093 5.13567 5.17756 5.20107 5.30431 5.35286 5.49447 5.57416 5.63885 5.66713 5.72716 5.85581 6.06749 6.23952 6.25940 6.87442 7.16819 7.39499 7.64614 8.93630 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021018 B = 0.002201 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.849296 B =12717.039257 C =13668.590237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.160 3.840 3 H 0.072 0.928 4 C -0.106 4.106 5 C -0.039 4.039 6 C -0.022 4.022 7 C -0.225 4.225 8 C -0.228 4.228 9 C -0.050 4.050 10 O -0.194 6.194 11 N -0.727 5.727 12 C 0.698 3.302 13 O -0.639 6.639 14 N -0.732 5.732 15 C 0.151 3.849 16 C -0.100 4.100 17 C 0.023 3.977 18 C -0.540 4.540 19 H 0.067 0.933 20 C -0.005 4.005 21 N -0.935 5.935 22 Si 0.968 3.032 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.260 1.260 26 H 0.033 0.967 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.157 0.843 34 H 0.164 0.836 35 H 0.232 0.768 36 H 0.410 0.590 37 H 0.411 0.589 38 H 0.046 0.954 39 H 0.045 0.955 40 H 0.067 0.933 41 H 0.067 0.933 42 H -0.008 1.008 43 H -0.008 1.008 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.886 -8.722 -30.846 32.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.056 3.944 3 H 0.090 0.910 4 C -0.144 4.144 5 C -0.076 4.076 6 C -0.072 4.072 7 C -0.244 4.244 8 C -0.247 4.247 9 C -0.117 4.117 10 O -0.091 6.091 11 N -0.384 5.384 12 C 0.398 3.602 13 O -0.521 6.521 14 N -0.388 5.388 15 C 0.026 3.974 16 C -0.138 4.138 17 C -0.015 4.015 18 C -0.578 4.578 19 H 0.085 0.915 20 C -0.203 4.203 21 N -0.575 5.575 22 Si 0.792 3.208 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.184 1.184 26 H 0.052 0.948 27 H 0.101 0.899 28 H 0.087 0.913 29 H 0.116 0.884 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.097 0.903 33 H 0.175 0.825 34 H 0.182 0.818 35 H 0.248 0.752 36 H 0.246 0.754 37 H 0.247 0.753 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.010 0.990 43 H 0.010 0.990 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.160 -7.730 -30.429 31.470 hybrid contribution 0.562 -0.651 0.803 1.176 sum -1.599 -8.381 -29.627 30.831 Atomic orbital electron populations 1.22156 0.94897 1.02695 1.02118 1.20858 0.94156 0.96696 0.82723 0.91020 1.21810 0.93436 1.02162 0.97006 1.20172 0.96027 0.99520 0.91907 1.22712 1.03994 0.82101 0.98379 1.21919 1.07486 1.01896 0.93135 1.22175 1.07100 0.93189 1.02264 1.24721 1.03818 1.02105 0.81030 1.84022 1.64922 1.27713 1.32404 1.45128 1.71199 1.14140 1.07957 1.16182 0.78111 0.84702 0.81231 1.90889 1.59114 1.16657 1.85424 1.45051 1.70613 1.14485 1.08653 1.21041 0.99732 0.94620 0.82019 1.21582 1.00868 0.97849 0.93512 1.18949 0.95121 0.95118 0.92298 1.21678 1.43593 0.97176 0.95340 0.91528 1.26042 0.95906 0.96809 1.01511 1.70111 1.49981 1.16354 1.21067 0.85404 0.78556 0.79150 0.77656 1.19827 1.21072 1.18426 0.94770 0.89859 0.91307 0.88366 0.89972 0.88504 0.90267 0.82501 0.81845 0.75218 0.75385 0.75289 0.93605 0.93675 0.91424 0.91393 0.98955 0.98951 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 9.48 71.98 0.68 -1.95 16 2 C 0.16 2.68 2.58 44.99 0.12 2.80 16 3 H 0.07 1.52 7.58 -2.39 -0.02 1.51 16 4 C -0.11 -1.18 4.74 30.59 0.14 -1.03 16 5 C -0.04 -0.53 5.64 29.85 0.17 -0.36 16 6 C -0.02 -0.36 6.57 24.83 0.16 -0.19 16 7 C -0.23 -3.42 10.81 22.19 0.24 -3.18 16 8 C -0.23 -3.06 10.91 22.19 0.24 -2.82 16 9 C -0.05 -0.64 12.09 66.97 0.81 0.17 16 10 O -0.19 -3.37 10.65 -2.58 -0.03 -3.40 16 11 N -0.73 -13.86 4.53 -457.82 -2.08 -15.93 16 12 C 0.70 20.43 8.53 179.06 1.53 21.96 16 13 O -0.64 -25.00 16.01 -4.00 -0.06 -25.07 16 14 N -0.73 -20.40 5.56 -478.52 -2.66 -23.06 16 15 C 0.15 5.44 5.67 86.38 0.49 5.93 16 16 C -0.10 -3.88 5.27 30.59 0.16 -3.72 16 17 C 0.02 1.20 4.97 29.85 0.15 1.35 16 18 C -0.54 -30.27 9.11 25.60 0.23 -30.03 16 19 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 20 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 21 N -0.93 -57.45 13.29 21.45 0.28 -57.16 16 22 Si 0.97 43.98 29.54 68.60 2.03 46.01 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 25 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 26 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 1.14 7.75 -2.39 -0.02 1.12 16 33 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 34 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 35 H 0.23 1.12 8.06 -2.91 -0.02 1.10 16 36 H 0.41 5.33 8.62 -92.71 -0.80 4.53 16 37 H 0.41 8.53 8.49 -92.71 -0.79 7.74 16 38 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 39 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 42 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 43 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 44 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -75.51 373.08 2.47 -73.03 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -0.60 Total: 16.49 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: 5.59 Total: -10.91 kcal Atomic # 7 Polarization: -91.70 SS G_CDS: -4.45 Total: -96.16 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.09 Total: -28.46 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -75.51 2.47 -73.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264172607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.006 kcal (2) G-P(sol) polarization free energy of solvation -75.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds