Wall clock time and date at job start Tue Mar 31 2020 07:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46824 * 2 1 4 4 C 1.53000 * 109.46846 * 119.99583 * 2 1 3 5 5 C 1.52997 * 109.47060 * 185.00166 * 4 2 1 6 6 C 1.50697 * 109.47466 * 180.02562 * 5 4 2 7 7 C 1.34518 * 125.78983 * 89.71495 * 6 5 4 8 8 C 1.41378 * 106.84364 * 179.89403 * 7 6 5 9 9 C 1.34522 * 106.83917 * 0.37066 * 8 7 6 10 10 O 1.34302 * 108.41941 * 359.77436 * 9 8 7 11 11 N 1.46498 * 109.47107 * 239.99825 * 2 1 3 12 12 C 1.34775 * 119.99962 * 85.00055 * 11 2 1 13 13 O 1.21587 * 119.99912 * 0.02562 * 12 11 2 14 14 N 1.34780 * 119.99894 * 179.97438 * 12 11 2 15 15 C 1.46502 * 119.99520 * 179.97438 * 14 12 11 16 16 C 1.53009 * 109.46657 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.46867 * 180.02562 * 16 15 14 18 18 C 1.50703 * 109.46924 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99575 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00014 * 180.02562 * 18 17 16 21 21 N 1.31511 * 119.99932 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 119.99953 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46746 * 90.00560 * 22 20 18 24 24 H 1.48498 * 109.46733 * 210.00144 * 22 20 18 25 25 H 1.48493 * 109.47199 * 330.00444 * 22 20 18 26 26 H 1.08996 * 109.46751 * 60.00260 * 1 2 3 27 27 H 1.09002 * 109.46824 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47241 * 299.99897 * 1 2 3 29 29 H 1.09002 * 109.47398 * 305.00335 * 4 2 1 30 30 H 1.09001 * 109.47194 * 65.00515 * 4 2 1 31 31 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 32 32 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 33 33 H 1.08002 * 126.57753 * 0.02827 * 7 6 5 34 34 H 1.07997 * 126.58088 * 180.16594 * 8 7 6 35 35 H 1.07992 * 125.79127 * 179.79596 * 9 8 7 36 36 H 0.96998 * 119.99659 * 264.99982 * 11 2 1 37 37 H 0.96998 * 119.99727 * 0.02562 * 14 12 11 38 38 H 1.08993 * 109.47669 * 300.00256 * 15 14 12 39 39 H 1.09000 * 109.47236 * 60.00947 * 15 14 12 40 40 H 1.08993 * 109.47070 * 300.00353 * 16 15 14 41 41 H 1.09000 * 109.46744 * 60.00376 * 16 15 14 42 42 H 1.08996 * 109.47192 * 300.00426 * 17 16 15 43 43 H 1.09000 * 109.47160 * 60.00596 * 17 16 15 44 44 H 0.97000 * 120.00010 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0672 -1.3240 2.5440 7 6 4.4141 -2.6217 2.6162 8 6 4.8266 -2.8620 3.9469 9 6 4.6994 -1.6988 4.6104 10 8 4.2390 -0.7708 3.7557 11 7 2.0184 -0.6906 -1.1961 12 6 2.1471 -0.0183 -2.3571 13 8 1.8584 1.1615 -2.4116 14 7 2.5969 -0.6536 -3.4574 15 6 2.7362 0.0772 -4.7195 16 6 3.2607 -0.8691 -5.8014 17 6 3.4069 -0.1059 -7.1193 18 6 3.9229 -1.0381 -8.1851 19 1 4.1259 -2.0716 -7.9463 20 6 4.1359 -0.5715 -9.4649 21 7 4.5858 -1.3851 -10.3950 22 14 3.7842 1.2161 -9.8779 23 1 5.0061 2.0274 -9.6455 24 1 3.3816 1.3247 -11.3032 25 1 2.6855 1.7169 -9.0136 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6053 -0.2616 2.1370 30 1 1.7517 -1.7715 1.2057 31 1 3.9995 -1.0727 0.4261 32 1 3.8532 0.4370 1.3574 33 1 4.3852 -3.3413 1.8113 34 1 5.1738 -3.8003 4.3536 35 1 4.9289 -1.5383 5.6534 36 1 2.2491 -1.6318 -1.1525 37 1 2.8275 -1.5947 -3.4138 38 1 1.7654 0.4704 -5.0208 39 1 3.4369 0.9015 -4.5866 40 1 4.2315 -1.2628 -5.5003 41 1 2.5598 -1.6932 -5.9342 42 1 2.4363 0.2881 -7.4206 43 1 4.1081 0.7180 -6.9862 44 1 4.7353 -1.0569 -11.2955 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264172608.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:19 Heat of formation + Delta-G solvation = -42.343712 kcal Electronic energy + Delta-G solvation = -22505.969060 eV Core-core repulsion = 19038.239549 eV Total energy + Delta-G solvation = -3467.729511 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.87294 -40.03548 -37.13001 -35.35377 -33.68877 -33.32853 -32.89742 -31.62302 -30.47958 -28.29863 -26.99956 -24.43525 -23.02592 -22.07718 -21.39678 -20.80437 -20.65515 -20.28522 -18.19731 -17.66635 -16.85668 -16.48555 -16.25209 -15.54939 -15.13770 -14.82369 -14.51197 -14.35378 -14.15259 -13.85160 -13.62575 -13.25183 -13.14790 -12.89248 -12.69821 -12.53050 -12.30698 -12.03274 -11.90350 -11.72196 -11.52777 -11.07983 -11.05528 -10.88054 -10.25907 -10.24151 -9.99703 -9.81146 -9.66855 -9.27330 -9.22053 -8.77808 -8.66157 -8.54896 -6.05802 -4.04434 1.40346 2.29470 2.66674 2.76773 3.32142 3.32725 3.39648 3.44274 4.16919 4.32766 4.45149 4.53809 4.59223 4.65589 4.73119 4.88465 5.10657 5.20616 5.25861 5.28420 5.37414 5.49076 5.51790 5.55378 5.63487 5.64825 5.70637 5.81080 5.84228 6.03840 6.05275 6.18086 6.39733 6.46374 6.48127 6.70804 6.81736 6.83685 7.01348 7.24489 7.37772 7.76473 8.11122 8.50702 8.71512 8.97994 9.56549 11.07397 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022942 B = 0.002250 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.193069 B =12443.857070 C =13193.762132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.161 3.839 3 H 0.091 0.909 4 C -0.122 4.122 5 C -0.041 4.041 6 C -0.007 4.007 7 C -0.213 4.213 8 C -0.213 4.213 9 C -0.047 4.047 10 O -0.177 6.177 11 N -0.747 5.747 12 C 0.701 3.299 13 O -0.593 6.593 14 N -0.742 5.742 15 C 0.133 3.867 16 C -0.113 4.113 17 C -0.011 4.011 18 C -0.521 4.521 19 H 0.072 0.928 20 C 0.066 3.934 21 N -0.903 5.903 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.264 1.264 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.201 0.799 36 H 0.394 0.606 37 H 0.395 0.605 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.019 0.981 43 H 0.015 0.985 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.870 -2.139 30.711 31.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.056 3.944 3 H 0.109 0.891 4 C -0.160 4.160 5 C -0.078 4.078 6 C -0.057 4.057 7 C -0.232 4.232 8 C -0.232 4.232 9 C -0.115 4.115 10 O -0.073 6.073 11 N -0.404 5.404 12 C 0.401 3.599 13 O -0.472 6.472 14 N -0.397 5.397 15 C 0.010 3.990 16 C -0.151 4.151 17 C -0.049 4.049 18 C -0.559 4.559 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.542 5.542 22 Si 0.707 3.293 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.189 1.189 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.114 0.886 32 H 0.103 0.897 33 H 0.165 0.835 34 H 0.165 0.835 35 H 0.218 0.782 36 H 0.227 0.773 37 H 0.228 0.772 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.037 0.963 43 H 0.033 0.967 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.150 -0.721 30.509 30.799 hybrid contribution 0.248 -0.412 -0.242 0.539 sum -3.902 -1.134 30.268 30.539 Atomic orbital electron populations 1.22198 0.95283 1.02093 1.02709 1.20769 0.93908 0.97340 0.82406 0.89134 1.21934 0.94092 1.01928 0.98056 1.20183 0.95698 1.01166 0.90802 1.22519 1.04125 0.93138 0.85895 1.21627 1.07231 0.96051 0.98307 1.21856 1.07203 0.99572 0.94576 1.24023 1.03875 0.87548 0.96038 1.84026 1.65387 1.39169 1.18704 1.45258 1.72497 1.13511 1.09112 1.16018 0.78408 0.85168 0.80338 1.90914 1.57195 1.14432 1.84612 1.45346 1.70658 1.13910 1.09742 1.21502 1.01170 0.95212 0.81150 1.21703 1.00383 0.98086 0.94900 1.19504 0.96879 0.96228 0.92319 1.21097 1.43781 0.97742 0.93320 0.91033 1.25034 0.94514 0.97658 0.96340 1.69912 1.46005 1.35439 1.02865 0.86771 0.79349 0.85623 0.77543 1.20243 1.21392 1.18863 0.91652 0.92559 0.91791 0.89875 0.90773 0.88561 0.89740 0.83472 0.83532 0.78229 0.77273 0.77208 0.92027 0.92003 0.92184 0.92162 0.96287 0.96713 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.48 37.16 0.35 -1.04 16 2 C 0.16 1.37 2.57 -67.93 -0.17 1.20 16 3 H 0.09 0.95 7.58 -51.93 -0.39 0.56 16 4 C -0.12 -0.77 4.74 -26.73 -0.13 -0.89 16 5 C -0.04 -0.29 5.63 -27.89 -0.16 -0.45 16 6 C -0.01 -0.06 6.58 -35.63 -0.23 -0.29 16 7 C -0.21 -1.75 10.81 -39.70 -0.43 -2.18 16 8 C -0.21 -1.61 10.91 -39.70 -0.43 -2.04 16 9 C -0.05 -0.34 12.09 29.42 0.36 0.02 16 10 O -0.18 -1.64 10.65 5.71 0.06 -1.58 16 11 N -0.75 -7.02 4.53 -58.67 -0.27 -7.28 16 12 C 0.70 9.79 8.53 -86.92 -0.74 9.05 16 13 O -0.59 -10.86 16.01 5.29 0.08 -10.77 16 14 N -0.74 -9.93 5.56 -65.22 -0.36 -10.29 16 15 C 0.13 2.20 5.67 -4.04 -0.02 2.18 16 16 C -0.11 -2.08 5.27 -26.73 -0.14 -2.22 16 17 C -0.01 -0.26 4.04 -27.88 -0.11 -0.38 16 18 C -0.52 -14.67 9.66 -34.44 -0.33 -15.00 16 19 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 20 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 21 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 22 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.10 0.65 7.75 -51.93 -0.40 0.24 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.20 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.39 2.62 8.62 -40.82 -0.35 2.26 16 37 H 0.39 4.15 8.49 -40.82 -0.35 3.80 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 43 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 44 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 369.48 15.07 5.57 5.57 Total: -1.00 -34.62 369.48 -8.45 -43.07 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -7.34 Total: 1.39 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -2.30 Total: -10.23 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 0.14 Total: -44.56 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.15 Total: -12.35 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.62 -8.45 -43.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264172608.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.724 kcal (2) G-P(sol) polarization free energy of solvation -34.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds