Wall clock time and date at job start Tue Mar 31 2020 07:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46824 * 2 1 4 4 C 1.53000 * 109.46846 * 119.99583 * 2 1 3 5 5 C 1.52997 * 109.47060 * 185.00166 * 4 2 1 6 6 C 1.50697 * 109.47466 * 180.02562 * 5 4 2 7 7 C 1.34518 * 125.78983 * 89.71495 * 6 5 4 8 8 C 1.41378 * 106.84364 * 179.89403 * 7 6 5 9 9 C 1.34522 * 106.83917 * 0.37066 * 8 7 6 10 10 O 1.34302 * 108.41941 * 359.77436 * 9 8 7 11 11 N 1.46498 * 109.47107 * 239.99825 * 2 1 3 12 12 C 1.34775 * 119.99962 * 85.00055 * 11 2 1 13 13 O 1.21587 * 119.99912 * 0.02562 * 12 11 2 14 14 N 1.34780 * 119.99894 * 179.97438 * 12 11 2 15 15 C 1.46502 * 119.99520 * 179.97438 * 14 12 11 16 16 C 1.53009 * 109.46657 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.46867 * 180.02562 * 16 15 14 18 18 C 1.50703 * 109.46924 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99575 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00014 * 180.02562 * 18 17 16 21 21 N 1.31511 * 119.99932 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 119.99953 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46746 * 90.00560 * 22 20 18 24 24 H 1.48498 * 109.46733 * 210.00144 * 22 20 18 25 25 H 1.48493 * 109.47199 * 330.00444 * 22 20 18 26 26 H 1.08996 * 109.46751 * 60.00260 * 1 2 3 27 27 H 1.09002 * 109.46824 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47241 * 299.99897 * 1 2 3 29 29 H 1.09002 * 109.47398 * 305.00335 * 4 2 1 30 30 H 1.09001 * 109.47194 * 65.00515 * 4 2 1 31 31 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 32 32 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 33 33 H 1.08002 * 126.57753 * 0.02827 * 7 6 5 34 34 H 1.07997 * 126.58088 * 180.16594 * 8 7 6 35 35 H 1.07992 * 125.79127 * 179.79596 * 9 8 7 36 36 H 0.96998 * 119.99659 * 264.99982 * 11 2 1 37 37 H 0.96998 * 119.99727 * 0.02562 * 14 12 11 38 38 H 1.08993 * 109.47669 * 300.00256 * 15 14 12 39 39 H 1.09000 * 109.47236 * 60.00947 * 15 14 12 40 40 H 1.08993 * 109.47070 * 300.00353 * 16 15 14 41 41 H 1.09000 * 109.46744 * 60.00376 * 16 15 14 42 42 H 1.08996 * 109.47192 * 300.00426 * 17 16 15 43 43 H 1.09000 * 109.47160 * 60.00596 * 17 16 15 44 44 H 0.97000 * 120.00010 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0672 -1.3240 2.5440 7 6 4.4141 -2.6217 2.6162 8 6 4.8266 -2.8620 3.9469 9 6 4.6994 -1.6988 4.6104 10 8 4.2390 -0.7708 3.7557 11 7 2.0184 -0.6906 -1.1961 12 6 2.1471 -0.0183 -2.3571 13 8 1.8584 1.1615 -2.4116 14 7 2.5969 -0.6536 -3.4574 15 6 2.7362 0.0772 -4.7195 16 6 3.2607 -0.8691 -5.8014 17 6 3.4069 -0.1059 -7.1193 18 6 3.9229 -1.0381 -8.1851 19 1 4.1259 -2.0716 -7.9463 20 6 4.1359 -0.5715 -9.4649 21 7 4.5858 -1.3851 -10.3950 22 14 3.7842 1.2161 -9.8779 23 1 5.0061 2.0274 -9.6455 24 1 3.3816 1.3247 -11.3032 25 1 2.6855 1.7169 -9.0136 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6053 -0.2616 2.1370 30 1 1.7517 -1.7715 1.2057 31 1 3.9995 -1.0727 0.4261 32 1 3.8532 0.4370 1.3574 33 1 4.3852 -3.3413 1.8113 34 1 5.1738 -3.8003 4.3536 35 1 4.9289 -1.5383 5.6534 36 1 2.2491 -1.6318 -1.1525 37 1 2.8275 -1.5947 -3.4138 38 1 1.7654 0.4704 -5.0208 39 1 3.4369 0.9015 -4.5866 40 1 4.2315 -1.2628 -5.5003 41 1 2.5598 -1.6932 -5.9342 42 1 2.4363 0.2881 -7.4206 43 1 4.1081 0.7180 -6.9862 44 1 4.7353 -1.0569 -11.2955 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264172608.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:19 Heat of formation + Delta-G solvation = -65.453952 kcal Electronic energy + Delta-G solvation = -22506.971195 eV Core-core repulsion = 19038.239549 eV Total energy + Delta-G solvation = -3468.731646 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.44230 -41.09481 -38.00721 -36.75201 -35.12014 -34.37909 -33.68500 -33.14021 -31.47963 -28.88540 -28.68847 -25.18575 -24.53313 -22.64126 -22.34831 -22.15717 -21.54241 -21.21482 -19.33958 -18.85101 -18.20612 -17.46952 -16.90841 -16.76255 -16.39565 -15.87077 -15.63583 -15.44535 -15.33570 -14.82180 -14.73069 -14.56816 -13.93066 -13.77345 -13.70285 -13.62886 -13.40676 -13.12992 -12.91006 -12.72071 -12.67274 -12.45738 -12.12177 -11.90855 -11.76907 -11.69844 -11.57150 -11.31274 -11.20142 -10.81637 -10.75076 -10.32770 -9.73992 -9.31516 -8.28365 -6.31942 0.83985 1.37786 1.39421 1.51350 1.74014 1.77335 2.15285 2.22051 2.37341 3.07419 3.37414 3.60851 3.96143 4.02534 4.12565 4.15116 4.19706 4.25260 4.35513 4.44909 4.54218 4.58938 4.67443 4.80995 4.86670 4.92566 4.93275 4.98900 5.04487 5.06604 5.11752 5.19072 5.30147 5.34660 5.45241 5.57095 5.58576 5.63683 5.66048 5.67532 6.08474 6.25547 6.28813 6.76041 7.17614 7.32828 7.65501 8.87920 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022942 B = 0.002250 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.193069 B =12443.857070 C =13193.762132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.162 3.838 3 H 0.069 0.931 4 C -0.107 4.107 5 C -0.038 4.038 6 C -0.023 4.023 7 C -0.223 4.223 8 C -0.229 4.229 9 C -0.050 4.050 10 O -0.196 6.196 11 N -0.727 5.727 12 C 0.699 3.301 13 O -0.638 6.638 14 N -0.734 5.734 15 C 0.147 3.853 16 C -0.098 4.098 17 C -0.013 4.013 18 C -0.529 4.529 19 H 0.038 0.962 20 C 0.003 3.997 21 N -0.950 5.950 22 Si 0.947 3.053 23 H -0.267 1.267 24 H -0.285 1.285 25 H -0.248 1.248 26 H 0.035 0.965 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.159 0.841 34 H 0.163 0.837 35 H 0.232 0.768 36 H 0.411 0.589 37 H 0.411 0.589 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.020 0.980 43 H 0.019 0.981 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.361 -2.041 32.711 33.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.057 3.943 3 H 0.087 0.913 4 C -0.145 4.145 5 C -0.076 4.076 6 C -0.073 4.073 7 C -0.242 4.242 8 C -0.248 4.248 9 C -0.117 4.117 10 O -0.093 6.093 11 N -0.384 5.384 12 C 0.398 3.602 13 O -0.520 6.520 14 N -0.390 5.390 15 C 0.023 3.977 16 C -0.136 4.136 17 C -0.051 4.051 18 C -0.567 4.567 19 H 0.056 0.944 20 C -0.193 4.193 21 N -0.591 5.591 22 Si 0.771 3.229 23 H -0.193 1.193 24 H -0.211 1.211 25 H -0.172 1.172 26 H 0.054 0.946 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.118 0.882 32 H 0.094 0.906 33 H 0.177 0.823 34 H 0.181 0.819 35 H 0.248 0.752 36 H 0.247 0.753 37 H 0.247 0.753 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.039 0.961 43 H 0.038 0.962 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.640 -0.684 32.559 32.895 hybrid contribution 0.435 -0.554 -0.784 1.054 sum -4.205 -1.237 31.775 32.076 Atomic orbital electron populations 1.22155 0.94906 1.02770 1.02043 1.20824 0.94132 0.96586 0.82765 0.91284 1.21810 0.93419 1.02489 0.96774 1.20167 0.96196 1.00567 0.90628 1.22724 1.04981 0.93489 0.86100 1.21924 1.06974 0.96226 0.99090 1.22189 1.07521 1.00544 0.94536 1.24720 1.02753 0.87131 0.97094 1.84018 1.65873 1.40129 1.19253 1.45101 1.71195 1.14189 1.07919 1.16161 0.78104 0.84695 0.81201 1.90888 1.59106 1.16598 1.85414 1.45054 1.70636 1.14535 1.08728 1.21106 1.00244 0.94554 0.81834 1.21466 1.00989 0.97909 0.93286 1.19474 0.96535 0.95838 0.93257 1.21465 1.43240 0.97203 0.94785 0.94355 1.25988 0.94487 1.02538 0.96335 1.70057 1.47750 1.37816 1.03468 0.85703 0.79912 0.79798 0.77534 1.19260 1.21067 1.17154 0.94615 0.91155 0.90181 0.89210 0.89223 0.88174 0.90629 0.82329 0.81897 0.75199 0.75254 0.75328 0.92965 0.92802 0.91683 0.91739 0.96136 0.96221 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 9.48 71.98 0.68 -1.80 16 2 C 0.16 2.55 2.57 44.99 0.12 2.66 16 3 H 0.07 1.43 7.58 -2.39 -0.02 1.42 16 4 C -0.11 -1.12 4.74 30.59 0.14 -0.98 16 5 C -0.04 -0.50 5.63 29.85 0.17 -0.33 16 6 C -0.02 -0.37 6.58 24.83 0.16 -0.20 16 7 C -0.22 -3.30 10.81 22.19 0.24 -3.06 16 8 C -0.23 -3.05 10.91 22.19 0.24 -2.81 16 9 C -0.05 -0.63 12.09 66.97 0.81 0.18 16 10 O -0.20 -3.40 10.65 -2.49 -0.03 -3.43 16 11 N -0.73 -12.42 4.53 -457.80 -2.08 -14.50 16 12 C 0.70 18.74 8.53 179.05 1.53 20.27 16 13 O -0.64 -23.26 16.01 -3.99 -0.06 -23.32 16 14 N -0.73 -18.47 5.56 -478.52 -2.66 -21.13 16 15 C 0.15 4.69 5.67 86.38 0.49 5.18 16 16 C -0.10 -3.52 5.27 30.60 0.16 -3.36 16 17 C -0.01 -0.59 4.04 29.85 0.12 -0.47 16 18 C -0.53 -29.99 9.66 25.60 0.25 -29.74 16 19 H 0.04 2.36 7.99 -2.91 -0.02 2.33 16 20 C 0.00 0.19 5.47 84.65 0.46 0.65 16 21 N -0.95 -59.40 13.96 21.45 0.30 -59.10 16 22 Si 0.95 44.55 27.47 68.60 1.88 46.44 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 25 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 26 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.10 1.18 7.75 -2.39 -0.02 1.16 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.16 1.82 8.06 -2.91 -0.02 1.79 16 34 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 35 H 0.23 1.06 8.06 -2.91 -0.02 1.04 16 36 H 0.41 4.36 8.62 -92.71 -0.80 3.56 16 37 H 0.41 7.70 8.49 -92.71 -0.79 6.91 16 38 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 43 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 44 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -75.86 369.48 2.28 -73.58 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -0.65 Total: 15.27 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: 5.58 Total: -13.81 kcal Atomic # 7 Polarization: -90.28 SS G_CDS: -4.44 Total: -94.72 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.09 Total: -26.75 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.44 kcal Total: -75.86 2.28 -73.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264172608.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.121 kcal (2) G-P(sol) polarization free energy of solvation -75.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds