Wall clock time and date at job start Tue Mar 31 2020 07:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99796 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.46716 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.46500 * 179.97438 * 16 15 13 18 18 N 1.30262 * 125.61635 * 90.02866 * 17 16 15 19 19 C 1.34482 * 108.69608 * 179.97438 * 18 17 16 20 20 C 1.34330 * 107.67120 * 359.97438 * 19 18 17 21 21 C 1.50704 * 126.44017 * 180.02562 * 20 19 18 22 22 C 1.52993 * 109.46956 * 60.00151 * 21 20 19 23 23 C 1.53001 * 109.46625 * 180.02562 * 21 20 19 24 24 C 1.53003 * 109.46968 * 299.99854 * 21 20 19 25 25 O 1.33973 * 125.62245 * 269.70882 * 17 16 15 26 26 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 27 27 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 28 28 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 31 31 H 1.08998 * 109.46848 * 299.99555 * 15 13 12 32 32 H 1.08995 * 109.47381 * 59.99830 * 15 13 12 33 33 H 1.09000 * 109.47282 * 299.99596 * 16 15 13 34 34 H 1.09000 * 109.47246 * 59.99983 * 16 15 13 35 35 H 1.08003 * 126.16118 * 180.02562 * 19 18 17 36 36 H 1.09001 * 109.47373 * 60.00171 * 22 21 20 37 37 H 1.09004 * 109.46669 * 179.97438 * 22 21 20 38 38 H 1.08994 * 109.47530 * 299.99391 * 22 21 20 39 39 H 1.08996 * 109.47345 * 59.99730 * 23 21 20 40 40 H 1.09004 * 109.47019 * 179.97438 * 23 21 20 41 41 H 1.09001 * 109.47245 * 299.99548 * 23 21 20 42 42 H 1.09003 * 109.46994 * 60.00764 * 24 21 20 43 43 H 1.08999 * 109.46867 * 179.97438 * 24 21 20 44 44 H 1.08996 * 109.47250 * 300.00421 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8581 1.1586 2.4117 15 6 2.6499 -0.7283 3.5876 16 6 2.7006 0.2547 4.7589 17 6 3.2028 -0.4557 5.9893 18 7 4.4502 -0.5567 6.3509 19 6 4.5114 -1.2576 7.4970 20 6 3.2557 -1.5906 7.8389 21 6 2.8378 -2.3795 9.0531 22 6 3.2835 -1.6430 10.3179 23 6 1.3157 -2.5340 9.0617 24 6 3.4901 -3.7629 9.0117 25 8 2.4397 -1.0823 6.8948 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.7088 1.1611 -3.4845 30 1 2.2490 -1.6316 1.1527 31 1 1.9776 -1.5506 3.8326 32 1 3.6492 -1.1202 3.3980 33 1 3.3726 1.0773 4.5141 34 1 1.7011 0.6461 4.9483 35 1 5.4084 -1.5070 8.0444 36 1 2.8187 -0.6575 10.3473 37 1 2.9808 -2.2134 11.1960 38 1 4.3679 -1.5334 10.3115 39 1 0.9986 -3.0588 8.1606 40 1 1.0134 -3.1049 9.9397 41 1 0.8506 -1.5486 9.0909 42 1 4.5746 -3.6532 9.0054 43 1 3.1883 -4.3333 9.8901 44 1 3.1727 -4.2875 8.1106 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274934444.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:01 Heat of formation + Delta-G solvation = -44.160842 kcal Electronic energy + Delta-G solvation = -23142.930764 eV Core-core repulsion = 19675.122456 eV Total energy + Delta-G solvation = -3467.808308 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.46111 -38.97193 -37.41871 -35.02065 -34.77577 -33.43007 -32.35489 -29.53661 -28.44808 -27.74046 -27.69971 -25.30263 -24.96481 -22.88545 -21.58801 -20.69433 -19.88645 -19.39054 -17.44778 -16.93836 -16.59681 -15.80146 -15.54985 -15.20764 -14.93948 -14.52283 -14.44962 -14.16701 -13.65408 -13.58561 -12.96953 -12.84877 -12.75047 -12.61391 -12.42130 -12.12722 -12.10420 -11.91950 -11.65928 -11.47848 -11.34900 -11.31137 -11.13812 -11.05772 -10.93100 -10.71304 -10.49790 -10.32757 -10.22921 -9.12522 -9.05133 -8.71606 -8.54424 -7.91783 -6.11812 -4.21176 1.34556 2.49386 2.60958 3.26128 3.31339 3.32383 3.37505 3.81461 4.20495 4.26387 4.42482 4.45096 4.46932 4.76153 4.91650 4.99625 5.13082 5.15531 5.20078 5.23442 5.32044 5.37568 5.38766 5.43329 5.51900 5.60943 5.71395 5.74321 5.81007 5.82505 5.92432 6.01693 6.03500 6.25755 6.82680 6.96620 7.15262 7.45711 7.55607 7.69500 7.69564 7.91647 8.15449 8.65713 8.77621 9.11057 9.46258 10.94111 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032295 B = 0.002475 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.787687 B =11309.277942 C =11423.171856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.708 5.708 13 C 0.504 3.496 14 O -0.556 6.556 15 C -0.139 4.139 16 C -0.007 4.007 17 C 0.198 3.802 18 N -0.481 5.481 19 C -0.039 4.039 20 C -0.042 4.042 21 C 0.019 3.981 22 C -0.140 4.140 23 C -0.145 4.145 24 C -0.140 4.140 25 O -0.195 6.195 26 H 0.015 0.985 27 H 0.090 0.910 28 H 0.026 0.974 29 H 0.265 0.735 30 H 0.389 0.611 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.178 0.822 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.401 -8.685 23.994 25.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.067 0.933 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.355 5.355 13 C 0.289 3.711 14 O -0.436 6.436 15 C -0.180 4.180 16 C -0.045 4.045 17 C -0.008 4.008 18 N -0.210 5.210 19 C -0.178 4.178 20 C -0.095 4.095 21 C 0.019 3.981 22 C -0.197 4.197 23 C -0.202 4.202 24 C -0.197 4.197 25 O -0.082 6.082 26 H 0.034 0.966 27 H 0.109 0.891 28 H 0.045 0.955 29 H 0.075 0.925 30 H 0.222 0.778 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.133 0.867 34 H 0.118 0.882 35 H 0.195 0.805 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.548 -7.446 23.500 24.906 hybrid contribution -0.018 -1.277 -0.504 1.373 sum 3.530 -8.723 22.996 24.847 Atomic orbital electron populations 1.22079 0.98465 0.99093 1.00931 1.18750 0.91029 0.94026 0.79997 0.93300 1.21187 1.32508 1.13252 0.90361 0.92128 1.24895 0.94811 0.94966 0.99065 1.69894 1.35787 1.22425 1.23989 0.86500 0.79186 0.79562 0.81793 1.21128 1.20160 1.20183 1.46523 1.64867 1.13606 1.10542 1.20213 0.78756 0.87481 0.84695 1.90668 1.51600 1.16048 1.85237 1.21655 1.03839 0.99163 0.93321 1.19847 1.03961 0.96453 0.84242 1.26451 0.84433 0.96426 0.93512 1.70497 1.19568 1.18155 1.12755 1.22961 0.97505 1.01810 0.95509 1.23328 0.89594 1.02963 0.93657 1.19102 0.97122 0.93617 0.88305 1.21930 1.01855 1.00513 0.95411 1.21875 0.93082 1.02690 1.02586 1.21933 1.00865 0.94196 1.02735 1.84406 1.39542 1.54543 1.29715 0.96622 0.89137 0.95502 0.92513 0.77842 0.89115 0.88582 0.86738 0.88166 0.80460 0.92100 0.91245 0.91906 0.91937 0.91653 0.92004 0.91907 0.91244 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.26 37.16 0.34 -3.31 16 2 C 0.26 6.70 2.56 -69.09 -0.18 6.53 16 3 H 0.05 1.43 7.58 -51.92 -0.39 1.04 16 4 C -0.53 -14.19 8.73 -34.44 -0.30 -14.49 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.94 11.32 55.43 0.63 -24.31 16 8 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 9 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 N -0.71 -14.56 5.07 -54.93 -0.28 -14.84 16 13 C 0.50 9.71 7.79 -10.98 -0.09 9.63 16 14 O -0.56 -12.81 15.65 5.56 0.09 -12.72 16 15 C -0.14 -1.95 5.68 -27.88 -0.16 -2.11 16 16 C -0.01 -0.09 5.13 -27.88 -0.14 -0.23 16 17 C 0.20 2.73 7.60 -12.94 -0.10 2.63 16 18 N -0.48 -6.89 11.30 -11.10 -0.13 -7.02 16 19 C -0.04 -0.45 11.24 -17.77 -0.20 -0.65 16 20 C -0.04 -0.46 5.69 -35.69 -0.20 -0.66 16 21 C 0.02 0.14 0.93 -155.66 -0.15 0.00 16 22 C -0.14 -0.84 8.35 37.15 0.31 -0.53 16 23 C -0.15 -1.07 8.06 37.16 0.30 -0.77 16 24 C -0.14 -0.86 8.35 37.16 0.31 -0.55 16 25 O -0.20 -2.54 10.24 5.36 0.05 -2.48 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.39 6.90 8.54 -40.82 -0.35 6.55 16 31 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.11 1.64 8.10 -51.93 -0.42 1.22 16 34 H 0.10 1.34 8.10 -51.93 -0.42 0.92 16 35 H 0.18 1.55 8.06 -52.48 -0.42 1.13 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.06 0.35 8.02 -51.93 -0.42 -0.07 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.35 8.02 -51.93 -0.42 -0.06 16 43 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 367.20 15.07 5.53 5.53 Total: -1.00 -31.76 367.20 -6.81 -38.57 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -7.35 Total: 4.44 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -0.34 Total: -2.83 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 0.22 Total: -46.17 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: 0.14 Total: -15.20 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.76 -6.81 -38.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274934444.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.594 kcal (2) G-P(sol) polarization free energy of solvation -31.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds