Wall clock time and date at job start Tue Mar 31 2020 07:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99796 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.46716 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.46500 * 179.97438 * 16 15 13 18 18 N 1.30262 * 125.61635 * 90.02866 * 17 16 15 19 19 C 1.34482 * 108.69608 * 179.97438 * 18 17 16 20 20 C 1.34330 * 107.67120 * 359.97438 * 19 18 17 21 21 C 1.50704 * 126.44017 * 180.02562 * 20 19 18 22 22 C 1.52993 * 109.46956 * 60.00151 * 21 20 19 23 23 C 1.53001 * 109.46625 * 180.02562 * 21 20 19 24 24 C 1.53003 * 109.46968 * 299.99854 * 21 20 19 25 25 O 1.33973 * 125.62245 * 269.70882 * 17 16 15 26 26 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 27 27 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 28 28 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 31 31 H 1.08998 * 109.46848 * 299.99555 * 15 13 12 32 32 H 1.08995 * 109.47381 * 59.99830 * 15 13 12 33 33 H 1.09000 * 109.47282 * 299.99596 * 16 15 13 34 34 H 1.09000 * 109.47246 * 59.99983 * 16 15 13 35 35 H 1.08003 * 126.16118 * 180.02562 * 19 18 17 36 36 H 1.09001 * 109.47373 * 60.00171 * 22 21 20 37 37 H 1.09004 * 109.46669 * 179.97438 * 22 21 20 38 38 H 1.08994 * 109.47530 * 299.99391 * 22 21 20 39 39 H 1.08996 * 109.47345 * 59.99730 * 23 21 20 40 40 H 1.09004 * 109.47019 * 179.97438 * 23 21 20 41 41 H 1.09001 * 109.47245 * 299.99548 * 23 21 20 42 42 H 1.09003 * 109.46994 * 60.00764 * 24 21 20 43 43 H 1.08999 * 109.46867 * 179.97438 * 24 21 20 44 44 H 1.08996 * 109.47250 * 300.00421 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8581 1.1586 2.4117 15 6 2.6499 -0.7283 3.5876 16 6 2.7006 0.2547 4.7589 17 6 3.2028 -0.4557 5.9893 18 7 4.4502 -0.5567 6.3509 19 6 4.5114 -1.2576 7.4970 20 6 3.2557 -1.5906 7.8389 21 6 2.8378 -2.3795 9.0531 22 6 3.2835 -1.6430 10.3179 23 6 1.3157 -2.5340 9.0617 24 6 3.4901 -3.7629 9.0117 25 8 2.4397 -1.0823 6.8948 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.7088 1.1611 -3.4845 30 1 2.2490 -1.6316 1.1527 31 1 1.9776 -1.5506 3.8326 32 1 3.6492 -1.1202 3.3980 33 1 3.3726 1.0773 4.5141 34 1 1.7011 0.6461 4.9483 35 1 5.4084 -1.5070 8.0444 36 1 2.8187 -0.6575 10.3473 37 1 2.9808 -2.2134 11.1960 38 1 4.3679 -1.5334 10.3115 39 1 0.9986 -3.0588 8.1606 40 1 1.0134 -3.1049 9.9397 41 1 0.8506 -1.5486 9.0909 42 1 4.5746 -3.6532 9.0054 43 1 3.1883 -4.3333 9.8901 44 1 3.1727 -4.2875 8.1106 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274934444.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:00 Heat of formation + Delta-G solvation = -65.833138 kcal Electronic energy + Delta-G solvation = -23143.870545 eV Core-core repulsion = 19675.122456 eV Total energy + Delta-G solvation = -3468.748089 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.40716 -40.61334 -38.03010 -36.81073 -35.84646 -34.65390 -34.27521 -31.15972 -29.69170 -28.27018 -28.18696 -27.33937 -26.21086 -23.75597 -23.06608 -22.06365 -21.09943 -20.61652 -18.99647 -18.08161 -17.68032 -17.29779 -17.09955 -16.64267 -16.08034 -15.90852 -15.32258 -14.99385 -14.86221 -14.51402 -14.35233 -14.26201 -14.19618 -13.58612 -13.36935 -13.17378 -13.11585 -12.96726 -12.84812 -12.71845 -12.62560 -12.59276 -12.32756 -12.26520 -12.17887 -12.14131 -12.00700 -11.90548 -11.41688 -11.10839 -10.78033 -10.57026 -9.74271 -9.64115 -8.16958 -6.34436 0.41552 1.45284 1.47369 1.54968 1.58093 1.65611 1.81014 2.36052 2.60448 3.09783 3.13751 3.57240 3.76328 3.81671 3.93849 3.97388 4.09531 4.17977 4.24474 4.50345 4.62876 4.71887 4.73346 4.77492 4.79305 4.83309 4.86902 4.92674 4.95225 4.95956 5.02672 5.08963 5.10948 5.25622 5.31174 5.36180 5.37971 5.44760 5.61846 5.70256 5.91325 6.11159 6.73347 6.73561 6.95851 7.32873 7.55447 8.89058 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032295 B = 0.002475 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.787687 B =11309.277942 C =11423.171856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.269 3.731 3 H -0.001 1.001 4 C -0.548 4.548 5 H 0.073 0.927 6 C 0.013 3.987 7 N -0.917 5.917 8 Si 0.972 3.028 9 H -0.286 1.286 10 H -0.271 1.271 11 H -0.264 1.264 12 N -0.706 5.706 13 C 0.502 3.498 14 O -0.597 6.597 15 C -0.119 4.119 16 C 0.000 4.000 17 C 0.184 3.816 18 N -0.503 5.503 19 C -0.054 4.054 20 C -0.034 4.034 21 C 0.018 3.982 22 C -0.138 4.138 23 C -0.145 4.145 24 C -0.138 4.138 25 O -0.205 6.205 26 H 0.014 0.986 27 H 0.066 0.934 28 H 0.040 0.960 29 H 0.265 0.735 30 H 0.406 0.594 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.203 0.797 36 H 0.049 0.951 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.088 0.912 41 H 0.049 0.951 42 H 0.068 0.932 43 H 0.090 0.910 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.244 -11.259 25.522 28.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.165 3.835 3 H 0.017 0.983 4 C -0.586 4.586 5 H 0.091 0.909 6 C -0.187 4.187 7 N -0.556 5.556 8 Si 0.797 3.203 9 H -0.212 1.212 10 H -0.196 1.196 11 H -0.189 1.189 12 N -0.354 5.354 13 C 0.289 3.711 14 O -0.479 6.479 15 C -0.160 4.160 16 C -0.039 4.039 17 C -0.022 4.022 18 N -0.232 5.232 19 C -0.192 4.192 20 C -0.088 4.088 21 C 0.017 3.983 22 C -0.195 4.195 23 C -0.202 4.202 24 C -0.195 4.195 25 O -0.091 6.091 26 H 0.033 0.967 27 H 0.084 0.916 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.241 0.759 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.220 0.780 36 H 0.068 0.932 37 H 0.110 0.890 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.106 0.894 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.109 0.891 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.400 -10.059 25.058 27.357 hybrid contribution -0.276 -0.455 -0.865 1.016 sum 4.124 -10.513 24.192 26.699 Atomic orbital electron populations 1.21900 0.98246 0.99484 0.99662 1.18349 0.91180 0.91967 0.81959 0.98281 1.21532 1.32626 1.13608 0.90866 0.90877 1.25812 0.94897 0.95610 1.02353 1.70048 1.36933 1.23915 1.24658 0.85394 0.78620 0.78712 0.77587 1.21198 1.19633 1.18854 1.46284 1.65074 1.14336 1.09745 1.21053 0.77451 0.87039 0.85523 1.90651 1.53159 1.18181 1.85953 1.21533 1.04900 0.99124 0.90418 1.19677 1.03665 0.96101 0.84443 1.26203 0.84507 0.97557 0.93951 1.70461 1.19916 1.18784 1.14064 1.23389 0.98812 1.01871 0.95115 1.24095 0.89318 1.01731 0.93611 1.19357 0.97378 0.94177 0.87392 1.21943 1.02214 1.00077 0.95272 1.21889 0.92944 1.02252 1.03151 1.21943 1.01151 0.93124 1.03274 1.84406 1.40027 1.54620 1.30083 0.96693 0.91555 0.94077 0.92548 0.75891 0.86491 0.86964 0.87867 0.88298 0.78035 0.93204 0.89040 0.91256 0.93027 0.89361 0.93168 0.91266 0.89081 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.80 9.26 71.98 0.67 -6.13 16 2 C 0.27 13.96 2.56 44.24 0.11 14.08 16 3 H 0.00 -0.04 7.58 -2.38 -0.02 -0.06 16 4 C -0.55 -29.06 8.73 25.60 0.22 -28.84 16 5 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 6 C 0.01 0.72 5.30 84.66 0.45 1.17 16 7 N -0.92 -52.84 11.32 21.45 0.24 -52.59 16 8 Si 0.97 42.09 29.54 68.60 2.03 44.11 16 9 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 10 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 12 N -0.71 -28.88 5.07 -446.09 -2.26 -31.14 16 13 C 0.50 19.37 7.79 87.66 0.68 20.06 16 14 O -0.60 -28.36 15.65 -3.04 -0.05 -28.40 16 15 C -0.12 -3.20 5.68 29.85 0.17 -3.04 16 16 C 0.00 -0.01 5.13 29.85 0.15 0.14 16 17 C 0.18 4.95 7.60 88.34 0.67 5.62 16 18 N -0.50 -13.98 11.30 -303.81 -3.43 -17.41 16 19 C -0.05 -1.16 11.24 83.39 0.94 -0.23 16 20 C -0.03 -0.70 5.69 24.79 0.14 -0.56 16 21 C 0.02 0.23 0.93 -52.93 -0.05 0.18 16 22 C -0.14 -1.30 8.35 71.98 0.60 -0.70 16 23 C -0.15 -1.87 8.06 71.98 0.58 -1.28 16 24 C -0.14 -1.30 8.35 71.98 0.60 -0.69 16 25 O -0.20 -5.15 10.24 -3.73 -0.04 -5.19 16 26 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.07 3.69 6.07 -2.39 -0.01 3.67 16 28 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.27 14.50 8.31 -92.71 -0.77 13.72 16 30 H 0.41 13.83 8.54 -92.71 -0.79 13.04 16 31 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.10 3.03 8.10 -2.39 -0.02 3.01 16 34 H 0.10 2.68 8.10 -2.39 -0.02 2.66 16 35 H 0.20 3.09 8.06 -2.91 -0.02 3.06 16 36 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 38 H 0.07 0.57 8.02 -2.39 -0.02 0.55 16 39 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 41 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 42 H 0.07 0.57 8.02 -2.39 -0.02 0.55 16 43 H 0.09 0.48 8.14 -2.39 -0.02 0.47 16 44 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -70.06 367.20 2.62 -67.44 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.19 Total: 23.41 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: 5.94 Total: -0.22 kcal Atomic # 7 Polarization: -95.69 SS G_CDS: -5.45 Total: -101.14 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -0.09 Total: -33.59 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.11 kcal Total: -70.06 2.62 -67.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274934444.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.603 kcal (2) G-P(sol) polarization free energy of solvation -70.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds