Wall clock time and date at job start Tue Mar 31 2020 07:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46863 * 2 1 4 4 C 1.52993 * 109.47560 * 239.99841 * 2 1 3 5 5 C 1.50697 * 109.47462 * 174.99686 * 4 2 1 6 6 H 1.08000 * 120.00113 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99836 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00105 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99582 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47112 * 60.00669 * 9 7 5 11 11 H 1.48502 * 109.46770 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47391 * 300.00215 * 9 7 5 13 13 N 1.46899 * 109.47336 * 119.99246 * 2 1 3 14 14 C 1.46956 * 111.00293 * 295.00559 * 13 2 1 15 15 C 1.53056 * 109.38342 * 183.17592 * 14 13 2 16 16 N 1.46963 * 109.35944 * 301.62902 * 15 14 13 17 17 C 1.38542 * 110.99549 * 183.16636 * 16 15 14 18 18 N 1.32455 * 119.18560 * 235.90978 * 17 16 15 19 19 C 1.32301 * 120.76117 * 179.76259 * 18 17 16 20 20 C 1.38782 * 119.16538 * 0.50573 * 19 18 17 21 21 F 1.35102 * 120.74469 * 179.73043 * 20 19 18 22 22 C 1.38783 * 118.51349 * 359.74289 * 20 19 18 23 23 N 1.32297 * 119.16427 * 0.02562 * 22 20 19 24 24 C 1.46956 * 110.89784 * 59.28921 * 16 15 14 25 25 C 1.46962 * 110.99604 * 58.80371 * 13 2 1 26 26 H 1.09003 * 109.47560 * 300.00064 * 1 2 3 27 27 H 1.09000 * 109.47442 * 60.00648 * 1 2 3 28 28 H 1.09003 * 109.47344 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46923 * 294.99840 * 4 2 1 30 30 H 1.09002 * 109.47226 * 54.99591 * 4 2 1 31 31 H 0.97002 * 120.00015 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.48806 * 303.15319 * 14 13 2 33 33 H 1.09002 * 109.49141 * 63.19591 * 14 13 2 34 34 H 1.08992 * 109.49038 * 61.57437 * 15 14 13 35 35 H 1.08994 * 109.48641 * 181.64718 * 15 14 13 36 36 H 1.07996 * 120.41579 * 180.27028 * 19 18 17 37 37 H 1.08001 * 120.41919 * 180.02562 * 22 20 19 38 38 H 1.09002 * 109.48806 * 180.71933 * 24 16 15 39 39 H 1.09003 * 109.49203 * 60.65575 * 24 16 15 40 40 H 1.09001 * 109.48625 * 296.77747 * 25 13 2 41 41 H 1.09003 * 109.48941 * 56.82355 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5419 -0.6148 -1.3126 6 1 4.0790 -0.0860 -0.5391 7 6 4.2304 -1.1935 -2.3577 8 7 3.5765 -1.8378 -3.2993 9 14 6.0922 -1.0621 -2.4360 10 1 6.6839 -1.6881 -1.2263 11 1 6.5872 -1.7621 -3.6485 12 1 6.4855 0.3686 -2.4957 13 7 2.0196 -0.6923 1.1995 14 6 1.6485 0.0396 2.4186 15 6 2.2431 -0.6694 3.6377 16 7 1.7490 -2.0526 3.6858 17 6 2.2108 -2.7057 4.8171 18 7 2.8823 -3.8391 4.6797 19 6 3.3415 -4.4861 5.7384 20 6 3.1026 -3.9683 7.0036 21 9 3.5522 -4.6056 8.1068 22 6 2.3913 -2.7814 7.1103 23 7 1.9651 -2.1841 6.0095 24 6 2.1201 -2.7846 2.4668 25 6 1.5252 -2.0754 1.2480 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.7517 -1.7716 -1.2054 30 1 1.6054 -0.2618 -2.1369 31 1 4.0608 -2.2446 -4.0347 32 1 2.0365 1.0568 2.3643 33 1 0.5626 0.0690 2.5087 34 1 3.3303 -0.6744 3.5610 35 1 1.9445 -0.1445 4.5451 36 1 3.8921 -5.4076 5.6196 37 1 2.1883 -2.3508 8.0797 38 1 1.7321 -3.8018 2.5210 39 1 3.2060 -2.8137 2.3764 40 1 0.4379 -2.0703 1.3250 41 1 1.8230 -2.6001 0.3402 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299406638.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:44 Heat of formation + Delta-G solvation = 35.351625 kcal Electronic energy + Delta-G solvation = -23860.574421 eV Core-core repulsion = 20305.046478 eV Total energy + Delta-G solvation = -3555.527943 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.155 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.22751 -41.43815 -39.13432 -36.33874 -34.18781 -32.95603 -31.57037 -30.76665 -29.76934 -27.34400 -26.01513 -25.43351 -23.43733 -23.21527 -22.65810 -20.36268 -18.88090 -18.34023 -17.98909 -17.61203 -16.33659 -16.16791 -15.58560 -15.12378 -14.86301 -14.82964 -14.58843 -14.28871 -14.02299 -13.81159 -13.46165 -13.38084 -12.98592 -12.19555 -12.03403 -11.91842 -11.75284 -11.57914 -11.29255 -11.17616 -11.05836 -10.77961 -10.62981 -10.45976 -10.36160 -10.11194 -9.91399 -9.40676 -9.17228 -9.01046 -8.42459 -8.27068 -7.54499 -5.90392 -3.88555 0.49767 0.67623 2.95387 3.37562 3.39734 3.43793 3.47181 3.60784 3.80633 4.31065 4.45241 4.45907 4.55340 4.58919 5.06391 5.19964 5.27539 5.43961 5.47890 5.50082 5.69550 5.73620 5.77259 5.93411 5.94568 5.96076 6.05564 6.10393 6.31028 6.38074 6.43533 6.50272 6.61621 6.76704 6.94674 7.02324 7.49234 7.63305 7.81010 7.85042 7.96709 8.10559 8.55596 9.17270 9.73501 11.21410 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.018379 B = 0.003917 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.085958 B = 7147.500022 C = 8099.926015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.087 3.913 3 H 0.071 0.929 4 C 0.029 3.971 5 C -0.493 4.493 6 H 0.060 0.940 7 C 0.052 3.948 8 N -0.903 5.903 9 Si 0.889 3.111 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.513 5.513 14 C 0.051 3.949 15 C 0.072 3.928 16 N -0.457 5.457 17 C 0.493 3.507 18 N -0.523 5.523 19 C 0.157 3.843 20 C -0.052 4.052 21 F -0.126 7.126 22 C 0.155 3.845 23 N -0.509 5.509 24 C 0.072 3.928 25 C 0.054 3.946 26 H 0.041 0.959 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.020 0.980 30 H 0.019 0.981 31 H 0.258 0.742 32 H 0.082 0.918 33 H 0.041 0.959 34 H 0.055 0.945 35 H 0.091 0.909 36 H 0.179 0.821 37 H 0.180 0.820 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.036 0.964 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.762 -2.212 19.317 19.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.020 4.020 3 H 0.089 0.911 4 C -0.008 4.008 5 C -0.531 4.531 6 H 0.078 0.922 7 C -0.147 4.147 8 N -0.544 5.544 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.205 1.205 13 N -0.237 5.237 14 C -0.077 4.077 15 C -0.054 4.054 16 N -0.176 5.176 17 C 0.138 3.862 18 N -0.242 5.242 19 C -0.013 4.013 20 C -0.078 4.078 21 F -0.105 7.105 22 C -0.015 4.015 23 N -0.226 5.226 24 C -0.054 4.054 25 C -0.075 4.075 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.196 0.804 37 H 0.197 0.803 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.054 0.946 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.084 -1.777 18.242 18.778 hybrid contribution 1.191 -0.678 0.929 1.655 sum -2.894 -2.455 19.171 19.543 Atomic orbital electron populations 1.22518 0.99612 1.01416 1.00787 1.21910 0.90161 0.98453 0.91496 0.91050 1.19225 0.96359 0.95360 0.89870 1.21129 0.91766 1.33195 1.07058 0.92220 1.24990 0.97938 0.95828 0.95963 1.69946 1.35326 1.36782 1.12321 0.86711 0.86444 0.78005 0.77089 1.20432 1.21639 1.20511 1.62342 1.58924 1.01353 1.01107 1.22196 0.98338 0.97644 0.89556 1.22324 0.98624 0.84501 0.99921 1.58717 1.53593 1.04664 1.00664 1.21311 0.86625 0.88225 0.90044 1.68534 1.12006 1.10548 1.33092 1.23298 0.93546 0.98519 0.85911 1.19317 1.06319 0.97009 0.85205 1.91524 1.87540 1.80887 1.50561 1.23262 0.90358 0.89607 0.98298 1.68091 1.22340 1.34676 0.97532 1.22269 1.00962 0.96758 0.85455 1.22288 0.96849 0.90548 0.97779 0.93959 0.92492 0.92863 0.96179 0.96253 0.93227 0.89948 0.94128 0.92670 0.89038 0.80402 0.80340 0.89541 0.91487 0.94633 0.87777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.08 8.49 37.15 0.32 -2.76 16 2 C 0.09 1.71 2.30 -67.72 -0.16 1.55 16 3 H 0.07 1.42 8.11 -51.93 -0.42 1.00 16 4 C 0.03 0.71 4.27 -27.89 -0.12 0.59 16 5 C -0.49 -13.46 8.84 -34.44 -0.30 -13.77 16 6 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 7 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 8 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 9 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 N -0.51 -9.34 4.41 -226.48 -1.00 -10.34 16 14 C 0.05 0.77 5.25 -3.76 -0.02 0.75 16 15 C 0.07 1.02 5.46 -3.76 -0.02 1.00 16 16 N -0.46 -6.82 4.77 -175.21 -0.84 -7.66 16 17 C 0.49 6.99 7.17 -322.72 -2.32 4.68 16 18 N -0.52 -7.06 8.69 -13.87 -0.12 -7.18 16 19 C 0.16 1.63 11.29 -17.15 -0.19 1.44 16 20 C -0.05 -0.51 7.38 -39.18 -0.29 -0.80 16 21 F -0.13 -1.17 17.30 2.25 0.04 -1.13 16 22 C 0.15 1.51 11.29 -17.15 -0.19 1.32 16 23 N -0.51 -6.49 9.72 -13.87 -0.13 -6.62 16 24 C 0.07 1.15 4.77 -3.77 -0.02 1.13 16 25 C 0.05 0.93 4.82 -3.76 -0.02 0.92 16 26 H 0.04 0.63 6.59 -51.93 -0.34 0.28 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.89 6.45 -51.93 -0.34 0.56 16 29 H 0.02 0.52 6.11 -51.93 -0.32 0.20 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.08 1.15 8.12 -51.93 -0.42 0.73 16 33 H 0.04 0.60 6.60 -51.93 -0.34 0.25 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.09 1.17 7.64 -51.93 -0.40 0.77 16 36 H 0.18 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.18 1.12 8.06 -52.49 -0.42 0.69 16 38 H 0.09 1.31 7.80 -51.93 -0.40 0.90 16 39 H 0.07 1.17 8.04 -51.93 -0.42 0.75 16 40 H 0.04 0.60 6.46 -51.93 -0.34 0.26 16 41 H 0.10 2.08 6.07 -51.93 -0.32 1.76 16 LS Contribution 330.43 15.07 4.98 4.98 Total: -1.00 -30.44 330.43 -10.49 -40.93 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -5.71 Total: -1.18 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -3.43 Total: -2.58 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: -1.36 Total: -57.82 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 0.04 Total: -1.13 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.44 -10.49 -40.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299406638.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.283 kcal (2) G-P(sol) polarization free energy of solvation -30.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds