Wall clock time and date at job start Tue Mar 31 2020 07:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46863 * 2 1 4 4 C 1.52993 * 109.47560 * 239.99841 * 2 1 3 5 5 C 1.50697 * 109.47462 * 174.99686 * 4 2 1 6 6 H 1.08000 * 120.00113 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99836 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00105 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99582 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47112 * 60.00669 * 9 7 5 11 11 H 1.48502 * 109.46770 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47391 * 300.00215 * 9 7 5 13 13 N 1.46899 * 109.47336 * 119.99246 * 2 1 3 14 14 C 1.46956 * 111.00293 * 295.00559 * 13 2 1 15 15 C 1.53056 * 109.38342 * 183.17592 * 14 13 2 16 16 N 1.46963 * 109.35944 * 301.62902 * 15 14 13 17 17 C 1.38542 * 110.99549 * 183.16636 * 16 15 14 18 18 N 1.32455 * 119.18560 * 235.90978 * 17 16 15 19 19 C 1.32301 * 120.76117 * 179.76259 * 18 17 16 20 20 C 1.38782 * 119.16538 * 0.50573 * 19 18 17 21 21 F 1.35102 * 120.74469 * 179.73043 * 20 19 18 22 22 C 1.38783 * 118.51349 * 359.74289 * 20 19 18 23 23 N 1.32297 * 119.16427 * 0.02562 * 22 20 19 24 24 C 1.46956 * 110.89784 * 59.28921 * 16 15 14 25 25 C 1.46962 * 110.99604 * 58.80371 * 13 2 1 26 26 H 1.09003 * 109.47560 * 300.00064 * 1 2 3 27 27 H 1.09000 * 109.47442 * 60.00648 * 1 2 3 28 28 H 1.09003 * 109.47344 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46923 * 294.99840 * 4 2 1 30 30 H 1.09002 * 109.47226 * 54.99591 * 4 2 1 31 31 H 0.97002 * 120.00015 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.48806 * 303.15319 * 14 13 2 33 33 H 1.09002 * 109.49141 * 63.19591 * 14 13 2 34 34 H 1.08992 * 109.49038 * 61.57437 * 15 14 13 35 35 H 1.08994 * 109.48641 * 181.64718 * 15 14 13 36 36 H 1.07996 * 120.41579 * 180.27028 * 19 18 17 37 37 H 1.08001 * 120.41919 * 180.02562 * 22 20 19 38 38 H 1.09002 * 109.48806 * 180.71933 * 24 16 15 39 39 H 1.09003 * 109.49203 * 60.65575 * 24 16 15 40 40 H 1.09001 * 109.48625 * 296.77747 * 25 13 2 41 41 H 1.09003 * 109.48941 * 56.82355 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5419 -0.6148 -1.3126 6 1 4.0790 -0.0860 -0.5391 7 6 4.2304 -1.1935 -2.3577 8 7 3.5765 -1.8378 -3.2993 9 14 6.0922 -1.0621 -2.4360 10 1 6.6839 -1.6881 -1.2263 11 1 6.5872 -1.7621 -3.6485 12 1 6.4855 0.3686 -2.4957 13 7 2.0196 -0.6923 1.1995 14 6 1.6485 0.0396 2.4186 15 6 2.2431 -0.6694 3.6377 16 7 1.7490 -2.0526 3.6858 17 6 2.2108 -2.7057 4.8171 18 7 2.8823 -3.8391 4.6797 19 6 3.3415 -4.4861 5.7384 20 6 3.1026 -3.9683 7.0036 21 9 3.5522 -4.6056 8.1068 22 6 2.3913 -2.7814 7.1103 23 7 1.9651 -2.1841 6.0095 24 6 2.1201 -2.7846 2.4668 25 6 1.5252 -2.0754 1.2480 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.7517 -1.7716 -1.2054 30 1 1.6054 -0.2618 -2.1369 31 1 4.0608 -2.2446 -4.0347 32 1 2.0365 1.0568 2.3643 33 1 0.5626 0.0690 2.5087 34 1 3.3303 -0.6744 3.5610 35 1 1.9445 -0.1445 4.5451 36 1 3.8921 -5.4076 5.6196 37 1 2.1883 -2.3508 8.0797 38 1 1.7321 -3.8018 2.5210 39 1 3.2060 -2.8137 2.3764 40 1 0.4379 -2.0703 1.3250 41 1 1.8230 -2.6001 0.3402 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299406638.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:44 Heat of formation + Delta-G solvation = 16.675349 kcal Electronic energy + Delta-G solvation = -23861.384285 eV Core-core repulsion = 20305.046478 eV Total energy + Delta-G solvation = -3556.337807 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.155 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.00476 -42.38851 -40.40027 -37.65756 -35.09073 -34.89185 -32.98677 -32.01468 -30.97304 -29.17133 -27.24422 -26.34910 -25.15416 -24.35669 -23.95646 -21.77380 -20.23007 -19.29058 -18.99156 -18.49258 -18.30882 -17.19112 -16.83631 -16.53788 -16.15786 -15.95520 -15.78489 -15.61932 -15.20780 -15.08322 -14.63779 -14.50105 -14.21184 -13.88739 -13.63942 -13.29670 -12.98334 -12.91315 -12.86487 -12.57489 -12.44381 -12.32978 -12.17084 -12.03770 -11.93935 -11.57591 -11.13173 -11.05578 -10.94622 -10.44915 -10.30414 -9.44752 -8.95285 -8.07984 -6.12323 -0.38818 -0.13687 1.42738 1.44635 1.52010 1.95623 2.46985 2.48507 2.79493 2.95128 3.06981 3.28621 3.46345 3.66635 3.72290 3.90225 4.02037 4.17110 4.26445 4.34610 4.34849 4.47976 4.56064 4.60277 4.61720 4.80112 4.87027 4.95324 4.98386 5.07926 5.16400 5.22654 5.31785 5.45774 5.46282 5.53523 5.73259 5.92422 6.03395 6.31408 6.38606 6.51890 6.88287 7.01541 7.53497 9.03732 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.018379 B = 0.003917 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.085958 B = 7147.500022 C = 8099.926015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.097 3.903 3 H 0.070 0.930 4 C 0.035 3.965 5 C -0.499 4.499 6 H 0.057 0.943 7 C -0.002 4.002 8 N -0.939 5.939 9 Si 0.952 3.048 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.270 1.270 13 N -0.532 5.532 14 C 0.056 3.944 15 C 0.080 3.920 16 N -0.462 5.462 17 C 0.475 3.525 18 N -0.548 5.548 19 C 0.151 3.849 20 C -0.040 4.040 21 F -0.119 7.119 22 C 0.158 3.842 23 N -0.521 5.521 24 C 0.089 3.911 25 C 0.062 3.938 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.000 1.000 30 H -0.007 1.007 31 H 0.258 0.742 32 H 0.094 0.906 33 H 0.050 0.950 34 H 0.040 0.960 35 H 0.110 0.890 36 H 0.205 0.795 37 H 0.216 0.784 38 H 0.090 0.910 39 H 0.045 0.955 40 H 0.044 0.956 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.512 -1.783 21.969 22.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.011 4.011 3 H 0.088 0.912 4 C -0.002 4.002 5 C -0.538 4.538 6 H 0.075 0.925 7 C -0.198 4.198 8 N -0.581 5.581 9 Si 0.778 3.222 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.195 1.195 13 N -0.257 5.257 14 C -0.072 4.072 15 C -0.046 4.046 16 N -0.181 5.181 17 C 0.119 3.881 18 N -0.267 5.267 19 C -0.017 4.017 20 C -0.065 4.065 21 F -0.098 7.098 22 C -0.011 4.011 23 N -0.238 5.238 24 C -0.039 4.039 25 C -0.066 4.066 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.018 0.982 30 H 0.011 0.989 31 H 0.067 0.933 32 H 0.113 0.887 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.128 0.872 36 H 0.222 0.778 37 H 0.233 0.767 38 H 0.108 0.892 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.828 -1.351 20.938 21.327 hybrid contribution 1.137 -0.871 0.239 1.452 sum -2.690 -2.222 21.177 21.462 Atomic orbital electron populations 1.22379 0.97183 1.01576 1.02112 1.21607 0.92041 0.97440 0.90058 0.91186 1.19080 0.95087 0.94547 0.91523 1.21460 0.93305 1.32403 1.06622 0.92450 1.25789 1.02483 0.95706 0.95794 1.70075 1.37033 1.37957 1.13021 0.85701 0.81077 0.78337 0.77051 1.20025 1.21396 1.19517 1.62224 1.59759 1.01797 1.01899 1.22242 0.99014 0.97847 0.88129 1.22268 0.97659 0.84526 1.00153 1.58715 1.54235 1.04743 1.00453 1.21285 0.87756 0.88795 0.90230 1.68508 1.12815 1.10823 1.34600 1.23750 0.93155 0.99131 0.85678 1.19288 1.05405 0.96755 0.85066 1.91551 1.87352 1.80750 1.50176 1.23858 0.89130 0.89323 0.98810 1.68112 1.22906 1.35179 0.97618 1.21964 0.99298 0.96927 0.85684 1.22096 0.97249 0.90180 0.97074 0.91360 0.92370 0.93275 0.98189 0.98909 0.93309 0.88743 0.93157 0.94111 0.87218 0.77815 0.76719 0.89171 0.93668 0.93828 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.64 8.49 71.98 0.61 -5.02 16 2 C 0.10 3.78 2.30 44.91 0.10 3.89 16 3 H 0.07 2.75 8.11 -2.39 -0.02 2.73 16 4 C 0.03 1.76 4.27 29.84 0.13 1.89 16 5 C -0.50 -27.89 8.84 25.60 0.23 -27.66 16 6 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 7 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 8 N -0.94 -57.13 13.29 21.45 0.28 -56.85 16 9 Si 0.95 45.27 29.54 68.60 2.03 47.30 16 10 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 12 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 13 N -0.53 -19.34 4.41 -870.46 -3.84 -23.18 16 14 C 0.06 1.58 5.25 86.31 0.45 2.03 16 15 C 0.08 2.15 5.46 86.31 0.47 2.62 16 16 N -0.46 -13.40 4.77 -708.24 -3.38 -16.78 16 17 C 0.47 12.90 7.17 261.45 1.88 14.78 16 18 N -0.55 -14.28 8.69 -197.78 -1.72 -16.00 16 19 C 0.15 2.86 11.29 84.75 0.96 3.82 16 20 C -0.04 -0.66 7.38 22.53 0.17 -0.49 16 21 F -0.12 -1.85 17.30 44.97 0.78 -1.07 16 22 C 0.16 2.61 11.29 84.75 0.96 3.57 16 23 N -0.52 -12.14 9.72 -197.78 -1.92 -14.06 16 24 C 0.09 2.85 4.77 86.31 0.41 3.26 16 25 C 0.06 2.22 4.82 86.31 0.42 2.64 16 26 H 0.07 1.87 6.59 -2.39 -0.02 1.85 16 27 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.05 1.62 6.45 -2.39 -0.02 1.61 16 29 H 0.00 -0.01 6.11 -2.38 -0.01 -0.02 16 30 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 31 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 32 H 0.09 2.45 8.12 -2.39 -0.02 2.43 16 33 H 0.05 1.35 6.60 -2.39 -0.02 1.34 16 34 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.11 2.57 7.64 -2.39 -0.02 2.55 16 36 H 0.21 2.55 8.06 -2.91 -0.02 2.52 16 37 H 0.22 1.81 8.06 -2.91 -0.02 1.79 16 38 H 0.09 2.78 7.80 -2.39 -0.02 2.76 16 39 H 0.04 1.63 8.04 -2.39 -0.02 1.61 16 40 H 0.04 1.47 6.46 -2.39 -0.02 1.45 16 41 H 0.07 2.95 6.07 -2.39 -0.01 2.94 16 Total: -1.00 -66.50 330.43 0.50 -66.00 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 1.04 Total: 8.97 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 7.24 Total: 5.69 kcal Atomic # 7 Polarization: -116.29 SS G_CDS: -10.58 Total: -126.87 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.78 Total: -1.07 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -66.50 0.50 -66.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299406638.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.671 kcal (2) G-P(sol) polarization free energy of solvation -66.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds