Wall clock time and date at job start Tue Mar 31 2020 07:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 109.47392 * 2 1 4 4 C 1.53000 * 109.46870 * 120.00004 * 2 1 3 5 5 C 1.50693 * 109.47106 * 183.71320 * 4 2 1 6 6 H 1.07995 * 119.99948 * 5.07331 * 5 4 2 7 7 C 1.37884 * 119.99991 * 185.07528 * 5 4 2 8 8 N 1.31510 * 119.99778 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99876 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47063 * 90.00059 * 9 7 5 11 11 H 1.48500 * 109.47031 * 209.99888 * 9 7 5 12 12 H 1.48507 * 109.47181 * 330.00051 * 9 7 5 13 13 N 1.46900 * 109.46739 * 239.99886 * 2 1 3 14 14 C 1.46946 * 111.00081 * 72.33223 * 13 2 1 15 15 C 1.53050 * 109.36532 * 176.80757 * 14 13 2 16 16 N 1.46954 * 109.36475 * 58.40301 * 15 14 13 17 17 C 1.38543 * 111.00064 * 176.81505 * 16 15 14 18 18 N 1.32448 * 119.18848 * 123.52838 * 17 16 15 19 19 C 1.32300 * 120.76746 * 179.75487 * 18 17 16 20 20 C 1.38786 * 119.16001 * 0.50944 * 19 18 17 21 21 F 1.35105 * 120.74022 * 179.72863 * 20 19 18 22 22 C 1.38776 * 118.51597 * 359.74496 * 20 19 18 23 23 N 1.32300 * 119.16297 * 0.02562 * 22 20 19 24 24 C 1.46959 * 110.88045 * 300.68060 * 16 15 14 25 25 C 1.46954 * 111.00014 * 308.53011 * 13 2 1 26 26 H 1.08993 * 109.47392 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46912 * 59.99658 * 1 2 3 28 28 H 1.09001 * 109.46945 * 300.00656 * 1 2 3 29 29 H 1.09002 * 109.47203 * 303.71708 * 4 2 1 30 30 H 1.09001 * 109.47344 * 63.71015 * 4 2 1 31 31 H 0.97004 * 119.99544 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.49162 * 296.77382 * 14 13 2 33 33 H 1.09005 * 109.49132 * 56.84416 * 14 13 2 34 34 H 1.09002 * 109.48920 * 298.43747 * 15 14 13 35 35 H 1.08999 * 109.51014 * 178.38012 * 15 14 13 36 36 H 1.08002 * 120.42053 * 180.27133 * 19 18 17 37 37 H 1.07996 * 120.41802 * 180.02562 * 22 20 19 38 38 H 1.09001 * 109.48962 * 299.35472 * 24 16 15 39 39 H 1.08996 * 109.51177 * 179.29908 * 24 16 15 40 40 H 1.09001 * 109.49134 * 303.15692 * 25 13 2 41 41 H 1.08994 * 109.49311 * 63.22619 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5441 -0.6421 1.2962 6 1 4.0775 -0.0600 0.5593 7 6 4.2394 -1.3129 2.2800 8 7 3.5899 -2.0213 3.1776 9 14 6.1039 -1.2141 2.3385 10 1 6.5123 -0.0623 3.1821 11 1 6.6481 -2.4689 2.9170 12 1 6.6335 -1.0327 0.9630 13 7 2.0197 -0.6925 -1.1994 14 6 1.8026 0.1218 -2.4032 15 6 2.3963 -0.5977 -3.6166 16 7 1.7660 -1.9179 -3.7567 17 6 2.2279 -2.5710 -4.8878 18 7 2.7790 -3.7688 -4.7623 19 6 3.2261 -4.4225 -5.8221 20 6 3.1213 -3.8330 -7.0741 21 9 3.5724 -4.4696 -8.1771 22 6 2.5431 -2.5749 -7.1678 23 7 2.1127 -1.9797 -6.0674 24 6 1.9831 -2.7323 -2.5528 25 6 1.3894 -2.0127 -1.3395 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5139 0.8899 29 1 1.6233 -0.2473 2.1380 30 1 1.7320 -1.7663 1.2167 31 1 4.0791 -2.4934 3.8695 32 1 0.7333 0.2688 -2.5549 33 1 2.2892 1.0895 -2.2803 34 1 3.4703 -0.7205 -3.4769 35 1 2.2113 -0.0093 -4.5152 36 1 3.6705 -5.4009 -5.7138 37 1 2.4457 -2.0879 -8.1267 38 1 3.0524 -2.8793 -2.4011 39 1 1.4968 -3.7001 -2.6755 40 1 1.5748 -2.6013 -0.4410 41 1 0.3154 -1.8900 -1.4791 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299407624.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:47 Heat of formation + Delta-G solvation = 34.981458 kcal Electronic energy + Delta-G solvation = -23867.899639 eV Core-core repulsion = 20312.355645 eV Total energy + Delta-G solvation = -3555.543994 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.155 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.22734 -41.43853 -39.12444 -36.32646 -34.18708 -32.95510 -31.57765 -30.75773 -29.77951 -27.31977 -26.01780 -25.43961 -23.39225 -23.23036 -22.70612 -20.31238 -18.91402 -18.34467 -17.99270 -17.61267 -16.33729 -16.16611 -15.59298 -15.10906 -14.85496 -14.82473 -14.58356 -14.29148 -14.03460 -13.80656 -13.45709 -13.36780 -12.96531 -12.18458 -12.02329 -11.91531 -11.72756 -11.57576 -11.29442 -11.23430 -11.04398 -10.80922 -10.55727 -10.53199 -10.33044 -10.10334 -9.95522 -9.40731 -9.18940 -8.98267 -8.42776 -8.26398 -7.52558 -5.89193 -3.86729 0.49705 0.67645 2.95379 3.37938 3.38282 3.44784 3.49325 3.60779 3.80595 4.31052 4.45154 4.45677 4.56269 4.58824 5.06683 5.19935 5.27812 5.44534 5.48745 5.50219 5.69050 5.73464 5.76434 5.92969 5.94360 5.96090 6.05034 6.10482 6.30262 6.35792 6.43193 6.49779 6.59605 6.74175 6.97167 7.02153 7.49639 7.62532 7.81123 7.85988 7.98234 8.11377 8.56963 9.18366 9.74790 11.22762 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.018007 B = 0.003958 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.594429 B = 7071.987983 C = 8001.802059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.088 3.912 3 H 0.069 0.931 4 C 0.030 3.970 5 C -0.489 4.489 6 H 0.058 0.942 7 C 0.052 3.948 8 N -0.903 5.903 9 Si 0.888 3.112 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.512 5.512 14 C 0.053 3.947 15 C 0.072 3.928 16 N -0.457 5.457 17 C 0.493 3.507 18 N -0.523 5.523 19 C 0.157 3.843 20 C -0.052 4.052 21 F -0.126 7.126 22 C 0.155 3.845 23 N -0.509 5.509 24 C 0.072 3.928 25 C 0.055 3.945 26 H 0.054 0.946 27 H 0.040 0.960 28 H 0.056 0.944 29 H 0.016 0.984 30 H 0.022 0.978 31 H 0.257 0.743 32 H 0.039 0.961 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.091 0.909 36 H 0.179 0.821 37 H 0.180 0.820 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.818 -1.628 -19.263 19.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.020 4.020 3 H 0.088 0.912 4 C -0.007 4.007 5 C -0.527 4.527 6 H 0.077 0.923 7 C -0.148 4.148 8 N -0.544 5.544 9 Si 0.716 3.284 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.236 5.236 14 C -0.076 4.076 15 C -0.054 4.054 16 N -0.176 5.176 17 C 0.138 3.862 18 N -0.242 5.242 19 C -0.013 4.013 20 C -0.078 4.078 21 F -0.105 7.105 22 C -0.015 4.015 23 N -0.226 5.226 24 C -0.055 4.055 25 C -0.073 4.073 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.034 0.966 30 H 0.041 0.959 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.110 0.890 36 H 0.196 0.804 37 H 0.197 0.803 38 H 0.086 0.914 39 H 0.104 0.896 40 H 0.118 0.882 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.125 -1.200 -18.204 18.704 hybrid contribution 1.196 -0.685 -0.952 1.675 sum -2.929 -1.886 -19.156 19.470 Atomic orbital electron populations 1.22518 0.99539 1.01489 1.00712 1.21910 0.90195 0.98224 0.91668 0.91230 1.19185 0.96321 0.95534 0.89626 1.21128 0.91581 1.28885 1.11130 0.92348 1.24979 0.97912 0.95848 0.96018 1.69957 1.35136 1.32865 1.16467 0.86661 0.86562 0.77124 0.78008 1.21022 1.21565 1.20022 1.62332 1.57617 1.02198 1.01408 1.22185 0.98894 0.96877 0.89639 1.22329 0.97163 0.86205 0.99695 1.58722 1.52080 1.05488 1.01350 1.21300 0.87029 0.87460 0.90413 1.68534 1.12680 1.10453 1.32512 1.23300 0.92552 0.99519 0.85921 1.19320 1.07335 0.95711 0.85438 1.91525 1.87249 1.81190 1.50542 1.23261 0.90337 0.89847 0.98086 1.68091 1.20220 1.36580 0.97709 1.22262 1.02041 0.95414 0.85761 1.22258 0.95850 0.91749 0.97478 0.92686 0.94095 0.92515 0.96626 0.95930 0.93324 0.94313 0.89890 0.92604 0.89042 0.80402 0.80335 0.91439 0.89572 0.88242 0.94507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.06 8.39 37.16 0.31 -2.74 16 2 C 0.09 1.71 2.26 -67.71 -0.15 1.56 16 3 H 0.07 1.37 7.98 -51.93 -0.41 0.96 16 4 C 0.03 0.75 4.40 -27.89 -0.12 0.63 16 5 C -0.49 -13.39 8.80 -34.44 -0.30 -13.69 16 6 H 0.06 1.60 7.75 -52.49 -0.41 1.19 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 9 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.51 -9.35 4.32 -226.49 -0.98 -10.33 16 14 C 0.05 0.80 5.36 -3.77 -0.02 0.78 16 15 C 0.07 1.03 5.46 -3.77 -0.02 1.01 16 16 N -0.46 -6.83 4.77 -175.21 -0.84 -7.66 16 17 C 0.49 7.00 7.18 -322.72 -2.32 4.69 16 18 N -0.52 -7.06 8.69 -13.86 -0.12 -7.18 16 19 C 0.16 1.63 11.29 -17.15 -0.19 1.44 16 20 C -0.05 -0.51 7.38 -39.18 -0.29 -0.80 16 21 F -0.13 -1.17 17.30 2.25 0.04 -1.13 16 22 C 0.15 1.52 11.29 -17.15 -0.19 1.32 16 23 N -0.51 -6.50 9.71 -13.87 -0.13 -6.64 16 24 C 0.07 1.14 4.77 -3.76 -0.02 1.12 16 25 C 0.06 0.95 4.70 -3.77 -0.02 0.93 16 26 H 0.05 0.92 6.38 -51.93 -0.33 0.58 16 27 H 0.04 0.61 6.85 -51.93 -0.36 0.25 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.02 0.59 6.42 -51.93 -0.33 0.26 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.04 0.57 6.85 -51.93 -0.36 0.22 16 33 H 0.08 1.18 8.05 -51.93 -0.42 0.77 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 1.18 7.64 -51.93 -0.40 0.78 16 36 H 0.18 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.07 1.18 8.03 -51.93 -0.42 0.76 16 39 H 0.09 1.29 7.81 -51.93 -0.41 0.88 16 40 H 0.10 1.94 6.37 -51.93 -0.33 1.60 16 41 H 0.04 0.61 6.40 -51.93 -0.33 0.27 16 LS Contribution 331.07 15.07 4.99 4.99 Total: -1.00 -30.65 331.07 -10.51 -41.16 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -5.75 Total: -1.54 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -3.43 Total: -2.40 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: -1.33 Total: -57.93 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 0.04 Total: -1.13 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.65 -10.51 -41.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299407624.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.140 kcal (2) G-P(sol) polarization free energy of solvation -30.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds