Wall clock time and date at job start Tue Mar 31 2020 07:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 109.47392 * 2 1 4 4 C 1.53000 * 109.46870 * 120.00004 * 2 1 3 5 5 C 1.50693 * 109.47106 * 183.71320 * 4 2 1 6 6 H 1.07995 * 119.99948 * 5.07331 * 5 4 2 7 7 C 1.37884 * 119.99991 * 185.07528 * 5 4 2 8 8 N 1.31510 * 119.99778 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99876 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47063 * 90.00059 * 9 7 5 11 11 H 1.48500 * 109.47031 * 209.99888 * 9 7 5 12 12 H 1.48507 * 109.47181 * 330.00051 * 9 7 5 13 13 N 1.46900 * 109.46739 * 239.99886 * 2 1 3 14 14 C 1.46946 * 111.00081 * 72.33223 * 13 2 1 15 15 C 1.53050 * 109.36532 * 176.80757 * 14 13 2 16 16 N 1.46954 * 109.36475 * 58.40301 * 15 14 13 17 17 C 1.38543 * 111.00064 * 176.81505 * 16 15 14 18 18 N 1.32448 * 119.18848 * 123.52838 * 17 16 15 19 19 C 1.32300 * 120.76746 * 179.75487 * 18 17 16 20 20 C 1.38786 * 119.16001 * 0.50944 * 19 18 17 21 21 F 1.35105 * 120.74022 * 179.72863 * 20 19 18 22 22 C 1.38776 * 118.51597 * 359.74496 * 20 19 18 23 23 N 1.32300 * 119.16297 * 0.02562 * 22 20 19 24 24 C 1.46959 * 110.88045 * 300.68060 * 16 15 14 25 25 C 1.46954 * 111.00014 * 308.53011 * 13 2 1 26 26 H 1.08993 * 109.47392 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46912 * 59.99658 * 1 2 3 28 28 H 1.09001 * 109.46945 * 300.00656 * 1 2 3 29 29 H 1.09002 * 109.47203 * 303.71708 * 4 2 1 30 30 H 1.09001 * 109.47344 * 63.71015 * 4 2 1 31 31 H 0.97004 * 119.99544 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.49162 * 296.77382 * 14 13 2 33 33 H 1.09005 * 109.49132 * 56.84416 * 14 13 2 34 34 H 1.09002 * 109.48920 * 298.43747 * 15 14 13 35 35 H 1.08999 * 109.51014 * 178.38012 * 15 14 13 36 36 H 1.08002 * 120.42053 * 180.27133 * 19 18 17 37 37 H 1.07996 * 120.41802 * 180.02562 * 22 20 19 38 38 H 1.09001 * 109.48962 * 299.35472 * 24 16 15 39 39 H 1.08996 * 109.51177 * 179.29908 * 24 16 15 40 40 H 1.09001 * 109.49134 * 303.15692 * 25 13 2 41 41 H 1.08994 * 109.49311 * 63.22619 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5441 -0.6421 1.2962 6 1 4.0775 -0.0600 0.5593 7 6 4.2394 -1.3129 2.2800 8 7 3.5899 -2.0213 3.1776 9 14 6.1039 -1.2141 2.3385 10 1 6.5123 -0.0623 3.1821 11 1 6.6481 -2.4689 2.9170 12 1 6.6335 -1.0327 0.9630 13 7 2.0197 -0.6925 -1.1994 14 6 1.8026 0.1218 -2.4032 15 6 2.3963 -0.5977 -3.6166 16 7 1.7660 -1.9179 -3.7567 17 6 2.2279 -2.5710 -4.8878 18 7 2.7790 -3.7688 -4.7623 19 6 3.2261 -4.4225 -5.8221 20 6 3.1213 -3.8330 -7.0741 21 9 3.5724 -4.4696 -8.1771 22 6 2.5431 -2.5749 -7.1678 23 7 2.1127 -1.9797 -6.0674 24 6 1.9831 -2.7323 -2.5528 25 6 1.3894 -2.0127 -1.3395 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5139 0.8899 29 1 1.6233 -0.2473 2.1380 30 1 1.7320 -1.7663 1.2167 31 1 4.0791 -2.4934 3.8695 32 1 0.7333 0.2688 -2.5549 33 1 2.2892 1.0895 -2.2803 34 1 3.4703 -0.7205 -3.4769 35 1 2.2113 -0.0093 -4.5152 36 1 3.6705 -5.4009 -5.7138 37 1 2.4457 -2.0879 -8.1267 38 1 3.0524 -2.8793 -2.4011 39 1 1.4968 -3.7001 -2.6755 40 1 1.5748 -2.6013 -0.4410 41 1 0.3154 -1.8900 -1.4791 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299407624.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:46 Heat of formation + Delta-G solvation = 16.199890 kcal Electronic energy + Delta-G solvation = -23868.714069 eV Core-core repulsion = 20312.355645 eV Total energy + Delta-G solvation = -3556.358424 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.155 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.00706 -42.39057 -40.38697 -37.64632 -35.09169 -34.89402 -33.00355 -31.99840 -30.98689 -29.15460 -27.24755 -26.35071 -25.12164 -24.39374 -23.97374 -21.72897 -20.26504 -19.29350 -18.99337 -18.49423 -18.31392 -17.19606 -16.83915 -16.52485 -16.13897 -15.95816 -15.78695 -15.62472 -15.22550 -15.06218 -14.60002 -14.51879 -14.21279 -13.86671 -13.64765 -13.27131 -13.00930 -12.92154 -12.86243 -12.59391 -12.41189 -12.34212 -12.17515 -12.03751 -11.97016 -11.58928 -11.13579 -11.04321 -10.94919 -10.45298 -10.30693 -9.45464 -8.93257 -8.07455 -6.11170 -0.39192 -0.13900 1.42020 1.42937 1.53632 1.95450 2.47116 2.48707 2.79239 2.94914 3.06881 3.29380 3.45961 3.66348 3.72070 3.90050 4.01820 4.16274 4.26229 4.34726 4.35148 4.48371 4.55909 4.60344 4.60997 4.79781 4.86902 4.93909 4.98531 5.06588 5.16328 5.23630 5.32423 5.45657 5.45695 5.53505 5.72656 5.92321 6.03078 6.31760 6.40110 6.52622 6.88062 7.02324 7.54119 9.04555 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.018007 B = 0.003958 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.594429 B = 7071.987983 C = 8001.802059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.097 3.903 3 H 0.070 0.930 4 C 0.036 3.964 5 C -0.495 4.495 6 H 0.056 0.944 7 C -0.002 4.002 8 N -0.939 5.939 9 Si 0.951 3.049 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.270 1.270 13 N -0.533 5.533 14 C 0.057 3.943 15 C 0.080 3.920 16 N -0.461 5.461 17 C 0.474 3.526 18 N -0.548 5.548 19 C 0.151 3.849 20 C -0.039 4.039 21 F -0.119 7.119 22 C 0.157 3.843 23 N -0.520 5.520 24 C 0.088 3.912 25 C 0.063 3.937 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.058 0.942 29 H -0.009 1.009 30 H -0.001 1.001 31 H 0.258 0.742 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.039 0.961 35 H 0.109 0.891 36 H 0.205 0.795 37 H 0.216 0.784 38 H 0.044 0.956 39 H 0.091 0.909 40 H 0.067 0.933 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.535 -1.138 -21.859 22.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.011 4.011 3 H 0.088 0.912 4 C -0.001 4.001 5 C -0.533 4.533 6 H 0.074 0.926 7 C -0.198 4.198 8 N -0.582 5.582 9 Si 0.778 3.222 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.195 1.195 13 N -0.257 5.257 14 C -0.071 4.071 15 C -0.046 4.046 16 N -0.181 5.181 17 C 0.119 3.881 18 N -0.267 5.267 19 C -0.017 4.017 20 C -0.065 4.065 21 F -0.098 7.098 22 C -0.011 4.011 23 N -0.238 5.238 24 C -0.040 4.040 25 C -0.065 4.065 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.009 0.991 30 H 0.017 0.983 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.057 0.943 35 H 0.128 0.872 36 H 0.222 0.778 37 H 0.233 0.767 38 H 0.062 0.938 39 H 0.109 0.891 40 H 0.086 0.914 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.836 -0.713 -20.842 21.204 hybrid contribution 1.137 -0.895 -0.274 1.473 sum -2.699 -1.609 -21.116 21.348 Atomic orbital electron populations 1.22377 0.97092 1.01679 1.02028 1.21607 0.92098 0.97254 0.90159 0.91208 1.19043 0.95065 0.94550 0.91438 1.21458 0.93126 1.28164 1.10602 0.92573 1.25778 1.02471 0.95735 0.95856 1.70084 1.36853 1.33963 1.17258 0.85649 0.81182 0.77211 0.78155 1.20148 1.21427 1.19480 1.62195 1.58410 1.02903 1.02237 1.22219 0.99762 0.96775 0.88316 1.22261 0.96044 0.86362 0.99938 1.58725 1.52784 1.05432 1.01135 1.21280 0.88229 0.88002 0.90575 1.68509 1.13553 1.10632 1.34021 1.23755 0.91958 1.00357 0.85659 1.19291 1.06313 0.95569 0.85293 1.91552 1.87041 1.81070 1.50155 1.23857 0.88928 0.89813 0.98546 1.68112 1.20854 1.37000 0.97838 1.21972 1.00324 0.95692 0.85970 1.22091 0.96480 0.91144 0.96799 0.93059 0.91586 0.92309 0.99060 0.98259 0.93366 0.93195 0.88918 0.94264 0.87243 0.77796 0.76724 0.93789 0.89057 0.91428 0.93442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.59 8.39 71.98 0.60 -4.99 16 2 C 0.10 3.79 2.26 44.92 0.10 3.89 16 3 H 0.07 2.72 7.98 -2.39 -0.02 2.70 16 4 C 0.04 1.85 4.40 29.85 0.13 1.98 16 5 C -0.50 -27.70 8.80 25.60 0.23 -27.47 16 6 H 0.06 3.11 7.75 -2.91 -0.02 3.08 16 7 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 8 N -0.94 -57.31 13.29 21.45 0.28 -57.03 16 9 Si 0.95 45.42 29.54 68.60 2.03 47.45 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 12 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 13 N -0.53 -19.46 4.32 -870.50 -3.76 -23.22 16 14 C 0.06 1.65 5.36 86.31 0.46 2.11 16 15 C 0.08 2.19 5.46 86.31 0.47 2.66 16 16 N -0.46 -13.40 4.77 -708.25 -3.38 -16.78 16 17 C 0.47 12.93 7.18 261.46 1.88 14.81 16 18 N -0.55 -14.29 8.69 -197.78 -1.72 -16.01 16 19 C 0.15 2.86 11.29 84.75 0.96 3.82 16 20 C -0.04 -0.66 7.38 22.53 0.17 -0.49 16 21 F -0.12 -1.85 17.30 44.97 0.78 -1.08 16 22 C 0.16 2.62 11.29 84.75 0.96 3.58 16 23 N -0.52 -12.20 9.71 -197.79 -1.92 -14.12 16 24 C 0.09 2.81 4.77 86.31 0.41 3.22 16 25 C 0.06 2.22 4.70 86.31 0.41 2.62 16 26 H 0.05 1.69 6.38 -2.39 -0.02 1.67 16 27 H 0.07 1.81 6.85 -2.39 -0.02 1.80 16 28 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 29 H -0.01 -0.49 8.14 -2.39 -0.02 -0.50 16 30 H 0.00 -0.05 6.42 -2.39 -0.02 -0.06 16 31 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 32 H 0.05 1.34 6.85 -2.39 -0.02 1.33 16 33 H 0.09 2.47 8.05 -2.38 -0.02 2.45 16 34 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.11 2.60 7.64 -2.39 -0.02 2.59 16 36 H 0.21 2.55 8.06 -2.91 -0.02 2.53 16 37 H 0.22 1.83 8.06 -2.91 -0.02 1.81 16 38 H 0.04 1.59 8.03 -2.39 -0.02 1.57 16 39 H 0.09 2.77 7.81 -2.39 -0.02 2.76 16 40 H 0.07 2.78 6.37 -2.39 -0.02 2.77 16 41 H 0.05 1.55 6.40 -2.39 -0.02 1.54 16 Total: -1.00 -66.87 331.07 0.57 -66.30 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 1.03 Total: 8.44 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 7.23 Total: 6.06 kcal Atomic # 7 Polarization: -116.66 SS G_CDS: -10.50 Total: -127.17 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.78 Total: -1.08 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -66.87 0.57 -66.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299407624.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.502 kcal (2) G-P(sol) polarization free energy of solvation -66.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds