Wall clock time and date at job start Tue Mar 31 2020 06:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.75176 * 2 1 4 4 C 1.53124 * 109.72874 * 239.35573 * 2 1 3 5 5 C 1.50099 * 109.90710 * 192.47895 * 4 2 1 6 6 O 1.34927 * 117.83069 * 196.33895 * 5 4 2 7 7 N 1.27284 * 124.33732 * 16.34956 * 5 4 2 8 8 C 1.45670 * 125.01220 * 359.38885 * 7 5 4 9 9 H 1.09002 * 109.23950 * 257.52172 * 8 7 5 10 10 C 1.50705 * 109.26577 * 138.03889 * 8 7 5 11 11 O 1.21295 * 119.99965 * 338.96880 * 10 8 7 12 12 N 1.34771 * 120.00134 * 158.97345 * 10 8 7 13 13 C 1.37098 * 120.00055 * 179.97438 * 12 10 8 14 14 H 1.08003 * 119.99723 * 222.37483 * 13 12 10 15 15 C 1.38943 * 120.00117 * 42.37794 * 13 12 10 16 16 N 1.31409 * 120.00144 * 19.44081 * 15 13 12 17 17 Si 1.86806 * 120.00092 * 199.44584 * 15 13 12 18 18 H 1.48501 * 109.46976 * 89.99595 * 17 15 13 19 19 H 1.48500 * 109.47154 * 209.99593 * 17 15 13 20 20 H 1.48503 * 109.47001 * 330.00129 * 17 15 13 21 21 C 1.46507 * 119.99879 * 359.72329 * 12 10 8 22 22 C 1.54271 * 110.03132 * 242.36468 * 21 12 10 23 23 C 1.54960 * 104.15977 * 217.13611 * 22 21 12 24 24 C 1.54889 * 102.77718 * 37.88880 * 23 22 21 25 25 C 1.53867 * 110.03324 * 125.15043 * 21 12 10 26 26 C 1.52974 * 110.51823 * 17.77012 * 8 7 5 27 27 H 1.08993 * 109.47301 * 299.35438 * 1 2 3 28 28 H 1.08994 * 109.47304 * 59.35752 * 1 2 3 29 29 H 1.09002 * 109.47107 * 179.35866 * 1 2 3 30 30 H 1.09000 * 109.39627 * 312.61357 * 4 2 1 31 31 H 1.09000 * 109.39802 * 72.42918 * 4 2 1 32 32 H 0.96701 * 113.99793 * 180.02562 * 6 5 4 33 33 H 0.97001 * 119.99896 * 174.94756 * 16 15 13 34 34 H 1.08992 * 110.01747 * 3.75532 * 21 12 10 35 35 H 1.08999 * 110.48447 * 335.78508 * 22 21 12 36 36 H 1.09000 * 110.48258 * 98.42503 * 22 21 12 37 37 H 1.08998 * 110.72045 * 279.57115 * 23 22 21 38 38 H 1.09007 * 110.92107 * 156.29752 * 23 22 21 39 39 H 1.08995 * 110.48679 * 203.40138 * 24 23 22 40 40 H 1.09004 * 110.59546 * 80.81864 * 24 23 22 41 41 H 1.09005 * 110.03432 * 238.57104 * 25 21 12 42 42 H 1.09007 * 110.03532 * 359.95215 * 25 21 12 43 43 H 1.09004 * 109.67246 * 70.12110 * 26 8 7 44 44 H 1.08991 * 109.68016 * 190.61845 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0469 -0.7347 -1.2401 5 6 3.5165 -1.0052 -1.0983 6 8 4.2066 -1.3338 -2.2102 7 7 4.1547 -0.9452 0.0013 8 6 3.5704 -0.5949 1.2888 9 1 3.8288 0.4357 1.5320 10 6 4.1229 -1.5100 2.3511 11 8 4.6055 -2.5785 2.0401 12 7 4.0807 -1.1412 3.6467 13 6 4.5829 -1.9739 4.6132 14 1 4.0441 -2.1136 5.5387 15 6 5.7849 -2.6381 4.4020 16 7 6.6232 -2.2046 3.4876 17 14 6.2092 -4.1473 5.4177 18 1 5.7027 -5.3635 4.7324 19 1 7.6832 -4.2428 5.5705 20 1 5.5787 -4.0355 6.7576 21 6 3.5032 0.1519 4.0218 22 6 4.5778 1.0381 4.6851 23 6 3.8108 1.7946 5.7989 24 6 2.8302 0.7197 6.3301 25 6 2.3923 -0.0502 5.0671 26 6 2.0479 -0.7361 1.2429 27 1 -0.3633 0.5037 0.8956 28 1 -0.3633 0.5237 -0.8841 29 1 -0.3633 -1.0276 -0.0115 30 1 1.5138 -1.6791 -1.3497 31 1 1.8769 -0.1185 -2.1230 32 1 5.1472 -1.4964 -2.0556 33 1 7.4930 -2.6227 3.3898 34 1 3.1003 0.6504 3.1403 35 1 5.3671 0.4223 5.1162 36 1 4.9926 1.7404 3.9619 37 1 3.2664 2.6430 5.3844 38 1 4.4900 2.1209 6.5866 39 1 1.9706 1.1901 6.8074 40 1 3.3348 0.0518 7.0283 41 1 1.4503 0.3509 4.6931 42 1 2.2822 -1.1105 5.2947 43 1 1.7788 -1.7907 1.1834 44 1 1.6112 -0.2960 2.1393 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328834033.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:49 Heat of formation + Delta-G solvation = -61.632691 kcal Electronic energy + Delta-G solvation = -25524.379858 eV Core-core repulsion = 22055.813914 eV Total energy + Delta-G solvation = -3468.565944 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.79582 -38.51411 -36.87438 -36.19380 -33.33631 -32.75704 -31.60217 -29.91764 -28.05756 -27.33902 -26.80513 -25.11496 -23.31634 -21.75015 -20.07958 -19.86671 -19.44977 -18.84506 -16.70505 -16.37790 -15.89683 -15.55256 -14.91086 -14.76434 -14.43474 -14.33644 -14.07655 -13.97420 -13.38290 -12.91828 -12.75897 -12.64328 -12.46697 -12.19915 -12.02443 -11.63913 -11.50988 -11.26468 -10.97996 -10.83173 -10.73126 -10.64813 -10.62722 -10.59952 -10.45734 -10.37497 -10.16484 -9.98933 -9.77070 -8.96492 -8.70885 -8.59978 -7.72161 -6.95508 -5.99550 -3.72939 2.81140 3.35878 3.42463 3.46567 3.78215 4.21056 4.40840 4.72341 4.77858 4.86797 5.07184 5.18523 5.21933 5.26894 5.36999 5.42275 5.53097 5.55741 5.61620 5.69204 5.79073 5.87106 5.91220 5.94678 6.00217 6.09865 6.13283 6.15583 6.18594 6.26209 6.32583 6.34568 6.45444 6.47991 6.54980 6.64298 6.83365 6.98010 7.23717 7.72404 7.77855 8.36992 8.59827 9.17909 9.33397 9.79092 10.45654 11.08840 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013174 B = 0.006765 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.831659 B = 4137.651750 C = 5528.186396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 H 0.076 0.924 4 C -0.094 4.094 5 C 0.341 3.659 6 O -0.491 6.491 7 N -0.568 5.568 8 C 0.093 3.907 9 H 0.088 0.912 10 C 0.489 3.511 11 O -0.518 6.518 12 N -0.448 5.448 13 C -0.344 4.344 14 H 0.078 0.922 15 C 0.073 3.927 16 N -0.825 5.825 17 Si 0.906 3.094 18 H -0.280 1.280 19 H -0.289 1.289 20 H -0.275 1.275 21 C 0.129 3.871 22 C -0.127 4.127 23 C -0.122 4.122 24 C -0.117 4.117 25 C -0.130 4.130 26 C -0.140 4.140 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.401 0.599 33 H 0.262 0.738 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.051 0.949 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.474 8.397 -3.758 13.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 H 0.094 0.906 4 C -0.134 4.134 5 C 0.111 3.889 6 O -0.288 6.288 7 N -0.299 5.299 8 C -0.020 4.020 9 H 0.105 0.895 10 C 0.275 3.725 11 O -0.393 6.393 12 N -0.172 5.172 13 C -0.471 4.471 14 H 0.096 0.904 15 C -0.138 4.138 16 N -0.458 5.458 17 Si 0.733 3.267 18 H -0.206 1.206 19 H -0.215 1.215 20 H -0.200 1.200 21 C 0.023 3.977 22 C -0.165 4.165 23 C -0.160 4.160 24 C -0.154 4.154 25 C -0.169 4.169 26 C -0.179 4.179 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.257 0.743 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.806 7.688 -4.065 13.107 hybrid contribution 0.246 -0.539 0.635 0.868 sum -9.560 7.149 -3.430 12.421 Atomic orbital electron populations 1.21765 0.93994 1.02197 1.01907 1.21235 0.96343 0.99476 0.93962 0.90589 1.20879 0.90494 1.02384 0.99661 1.22286 0.89973 0.91271 0.85403 1.84829 1.27411 1.84939 1.31599 1.69328 1.40521 1.20894 0.99120 1.21242 0.91877 0.99781 0.89075 0.89482 1.19417 0.83299 0.87172 0.82652 1.90513 1.44616 1.24047 1.80147 1.43317 1.55284 1.13706 1.04848 1.18786 1.04647 1.24441 0.99234 0.90446 1.25197 0.95068 0.97945 0.95606 1.69859 1.06007 1.38594 1.31331 0.86326 0.77056 0.83780 0.79510 1.20578 1.21479 1.20032 1.21744 0.93052 0.86872 0.95999 1.22688 0.99290 0.97661 0.96883 1.22448 0.97956 0.97263 0.98375 1.22252 0.98117 0.97423 0.97656 1.22447 0.97240 1.01561 0.95618 1.22248 0.95735 1.01738 0.98157 0.92095 0.92487 0.92364 0.89191 0.89400 0.74306 0.92817 0.91724 0.89089 0.93121 0.92589 0.92365 0.92958 0.91553 0.93050 0.90498 0.90936 0.90173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.20 37.16 0.34 -1.02 16 2 C -0.09 -1.14 2.83 -90.32 -0.26 -1.39 16 3 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 4 C -0.09 -1.22 5.41 -28.11 -0.15 -1.37 16 5 C 0.34 5.77 7.85 -14.45 -0.11 5.66 16 6 O -0.49 -7.54 13.52 -16.50 -0.22 -7.76 16 7 N -0.57 -11.80 9.47 -54.79 -0.52 -12.31 16 8 C 0.09 1.92 2.64 -69.54 -0.18 1.73 16 9 H 0.09 1.73 6.65 -51.93 -0.35 1.38 16 10 C 0.49 12.65 6.18 -10.99 -0.07 12.58 16 11 O -0.52 -15.92 14.17 5.54 0.08 -15.84 16 12 N -0.45 -10.99 2.47 -106.54 -0.26 -11.25 16 13 C -0.34 -9.28 7.55 -14.94 -0.11 -9.39 16 14 H 0.08 2.02 6.93 -52.48 -0.36 1.66 16 15 C 0.07 2.06 4.34 -17.47 -0.08 1.99 16 16 N -0.82 -24.86 11.65 55.50 0.65 -24.21 16 17 Si 0.91 22.29 29.60 -169.99 -5.03 17.26 16 18 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 C 0.13 2.49 2.72 -66.81 -0.18 2.31 16 22 C -0.13 -2.38 6.43 -25.03 -0.16 -2.54 16 23 C -0.12 -1.83 6.91 -24.70 -0.17 -2.00 16 24 C -0.12 -1.76 6.83 -25.07 -0.17 -1.93 16 25 C -0.13 -2.19 6.18 -25.62 -0.16 -2.35 16 26 C -0.14 -2.26 4.40 -26.51 -0.12 -2.38 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 1.11 8.09 -51.93 -0.42 0.69 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.40 5.49 8.89 45.56 0.40 5.90 16 33 H 0.26 7.65 8.32 -40.82 -0.34 7.31 16 34 H 0.06 1.14 4.63 -51.93 -0.24 0.90 16 35 H 0.09 2.05 7.21 -51.93 -0.37 1.67 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.82 8.14 -51.92 -0.42 0.39 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.08 1.46 6.69 -51.93 -0.35 1.11 16 43 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 44 H 0.08 1.20 6.92 -51.93 -0.36 0.84 16 LS Contribution 343.63 15.07 5.18 5.18 Total: -1.00 -34.42 343.63 -7.96 -42.38 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -6.25 Total: 6.68 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -1.58 Total: -0.11 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: -0.14 Total: -47.78 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.14 Total: -23.60 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.26 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.42 -7.96 -42.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328834033.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.254 kcal (2) G-P(sol) polarization free energy of solvation -34.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds