Wall clock time and date at job start Tue Mar 31 2020 06:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.75176 * 2 1 4 4 C 1.53124 * 109.72874 * 239.35573 * 2 1 3 5 5 C 1.50099 * 109.90710 * 192.47895 * 4 2 1 6 6 O 1.34927 * 117.83069 * 196.33895 * 5 4 2 7 7 N 1.27284 * 124.33732 * 16.34956 * 5 4 2 8 8 C 1.45670 * 125.01220 * 359.38885 * 7 5 4 9 9 H 1.09002 * 109.23950 * 257.52172 * 8 7 5 10 10 C 1.50705 * 109.26577 * 138.03889 * 8 7 5 11 11 O 1.21295 * 119.99965 * 338.96880 * 10 8 7 12 12 N 1.34771 * 120.00134 * 158.97345 * 10 8 7 13 13 C 1.37098 * 120.00055 * 179.97438 * 12 10 8 14 14 H 1.08003 * 119.99723 * 222.37483 * 13 12 10 15 15 C 1.38943 * 120.00117 * 42.37794 * 13 12 10 16 16 N 1.31409 * 120.00144 * 19.44081 * 15 13 12 17 17 Si 1.86806 * 120.00092 * 199.44584 * 15 13 12 18 18 H 1.48501 * 109.46976 * 89.99595 * 17 15 13 19 19 H 1.48500 * 109.47154 * 209.99593 * 17 15 13 20 20 H 1.48503 * 109.47001 * 330.00129 * 17 15 13 21 21 C 1.46507 * 119.99879 * 359.72329 * 12 10 8 22 22 C 1.54271 * 110.03132 * 242.36468 * 21 12 10 23 23 C 1.54960 * 104.15977 * 217.13611 * 22 21 12 24 24 C 1.54889 * 102.77718 * 37.88880 * 23 22 21 25 25 C 1.53867 * 110.03324 * 125.15043 * 21 12 10 26 26 C 1.52974 * 110.51823 * 17.77012 * 8 7 5 27 27 H 1.08993 * 109.47301 * 299.35438 * 1 2 3 28 28 H 1.08994 * 109.47304 * 59.35752 * 1 2 3 29 29 H 1.09002 * 109.47107 * 179.35866 * 1 2 3 30 30 H 1.09000 * 109.39627 * 312.61357 * 4 2 1 31 31 H 1.09000 * 109.39802 * 72.42918 * 4 2 1 32 32 H 0.96701 * 113.99793 * 180.02562 * 6 5 4 33 33 H 0.97001 * 119.99896 * 174.94756 * 16 15 13 34 34 H 1.08992 * 110.01747 * 3.75532 * 21 12 10 35 35 H 1.08999 * 110.48447 * 335.78508 * 22 21 12 36 36 H 1.09000 * 110.48258 * 98.42503 * 22 21 12 37 37 H 1.08998 * 110.72045 * 279.57115 * 23 22 21 38 38 H 1.09007 * 110.92107 * 156.29752 * 23 22 21 39 39 H 1.08995 * 110.48679 * 203.40138 * 24 23 22 40 40 H 1.09004 * 110.59546 * 80.81864 * 24 23 22 41 41 H 1.09005 * 110.03432 * 238.57104 * 25 21 12 42 42 H 1.09007 * 110.03532 * 359.95215 * 25 21 12 43 43 H 1.09004 * 109.67246 * 70.12110 * 26 8 7 44 44 H 1.08991 * 109.68016 * 190.61845 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0469 -0.7347 -1.2401 5 6 3.5165 -1.0052 -1.0983 6 8 4.2066 -1.3338 -2.2102 7 7 4.1547 -0.9452 0.0013 8 6 3.5704 -0.5949 1.2888 9 1 3.8288 0.4357 1.5320 10 6 4.1229 -1.5100 2.3511 11 8 4.6055 -2.5785 2.0401 12 7 4.0807 -1.1412 3.6467 13 6 4.5829 -1.9739 4.6132 14 1 4.0441 -2.1136 5.5387 15 6 5.7849 -2.6381 4.4020 16 7 6.6232 -2.2046 3.4876 17 14 6.2092 -4.1473 5.4177 18 1 5.7027 -5.3635 4.7324 19 1 7.6832 -4.2428 5.5705 20 1 5.5787 -4.0355 6.7576 21 6 3.5032 0.1519 4.0218 22 6 4.5778 1.0381 4.6851 23 6 3.8108 1.7946 5.7989 24 6 2.8302 0.7197 6.3301 25 6 2.3923 -0.0502 5.0671 26 6 2.0479 -0.7361 1.2429 27 1 -0.3633 0.5037 0.8956 28 1 -0.3633 0.5237 -0.8841 29 1 -0.3633 -1.0276 -0.0115 30 1 1.5138 -1.6791 -1.3497 31 1 1.8769 -0.1185 -2.1230 32 1 5.1472 -1.4964 -2.0556 33 1 7.4930 -2.6227 3.3898 34 1 3.1003 0.6504 3.1403 35 1 5.3671 0.4223 5.1162 36 1 4.9926 1.7404 3.9619 37 1 3.2664 2.6430 5.3844 38 1 4.4900 2.1209 6.5866 39 1 1.9706 1.1901 6.8074 40 1 3.3348 0.0518 7.0283 41 1 1.4503 0.3509 4.6931 42 1 2.2822 -1.1105 5.2947 43 1 1.7788 -1.7907 1.1834 44 1 1.6112 -0.2960 2.1393 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328834033.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:48 Heat of formation + Delta-G solvation = -88.510616 kcal Electronic energy + Delta-G solvation = -25525.545372 eV Core-core repulsion = 22055.813914 eV Total energy + Delta-G solvation = -3469.731458 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.27851 -40.04298 -38.33491 -37.65384 -35.15216 -34.15634 -33.50962 -31.38165 -29.43806 -28.45877 -28.27785 -26.88101 -24.89876 -22.98343 -21.50460 -21.36733 -21.01831 -20.18512 -18.40597 -17.89750 -17.66521 -16.83898 -16.61279 -16.15406 -15.92626 -15.73726 -15.56150 -15.26379 -15.06111 -14.39193 -14.24147 -14.07379 -14.03839 -13.37781 -13.13961 -13.10566 -12.90759 -12.77607 -12.70419 -12.45872 -12.38382 -12.21962 -12.05708 -11.82105 -11.78103 -11.74783 -11.69014 -11.34282 -11.29501 -10.75494 -10.47906 -10.09855 -9.60011 -8.97139 -8.14249 -5.88417 1.32792 1.41841 1.45067 1.46882 2.25255 2.47504 2.64541 3.14753 3.27888 3.58434 3.72927 3.80014 3.86012 3.90303 4.02203 4.15388 4.21516 4.36398 4.45134 4.56530 4.65524 4.70529 4.74157 4.75531 4.83063 4.84149 4.86498 4.95138 4.98197 5.05238 5.13114 5.14328 5.20844 5.31413 5.32811 5.45054 5.45602 5.58132 5.61133 5.69105 6.26359 6.47575 7.09636 7.22264 7.37195 7.78799 8.48011 8.94647 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013174 B = 0.006765 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.831659 B = 4137.651750 C = 5528.186396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.082 4.082 3 H 0.086 0.914 4 C -0.094 4.094 5 C 0.352 3.648 6 O -0.486 6.486 7 N -0.630 5.630 8 C 0.106 3.894 9 H 0.088 0.912 10 C 0.472 3.528 11 O -0.582 6.582 12 N -0.458 5.458 13 C -0.344 4.344 14 H 0.081 0.919 15 C 0.019 3.981 16 N -0.866 5.866 17 Si 0.961 3.039 18 H -0.296 1.296 19 H -0.285 1.285 20 H -0.251 1.251 21 C 0.120 3.880 22 C -0.129 4.129 23 C -0.109 4.109 24 C -0.113 4.113 25 C -0.125 4.125 26 C -0.131 4.131 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.121 0.879 32 H 0.406 0.594 33 H 0.253 0.747 34 H 0.085 0.915 35 H 0.044 0.956 36 H 0.051 0.949 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.046 0.954 41 H 0.087 0.913 42 H 0.049 0.951 43 H 0.049 0.951 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.657 10.675 -3.785 17.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.100 4.100 3 H 0.105 0.895 4 C -0.134 4.134 5 C 0.124 3.876 6 O -0.284 6.284 7 N -0.364 5.364 8 C -0.007 4.007 9 H 0.106 0.894 10 C 0.260 3.740 11 O -0.462 6.462 12 N -0.180 5.180 13 C -0.471 4.471 14 H 0.099 0.901 15 C -0.187 4.187 16 N -0.502 5.502 17 Si 0.787 3.213 18 H -0.224 1.224 19 H -0.211 1.211 20 H -0.175 1.175 21 C 0.017 3.983 22 C -0.167 4.167 23 C -0.147 4.147 24 C -0.151 4.151 25 C -0.164 4.164 26 C -0.170 4.170 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.117 0.883 31 H 0.139 0.861 32 H 0.263 0.737 33 H 0.062 0.938 34 H 0.103 0.897 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.065 0.935 41 H 0.105 0.895 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.022 10.007 -4.063 16.918 hybrid contribution 1.215 -1.232 0.567 1.821 sum -11.807 8.775 -3.496 15.121 Atomic orbital electron populations 1.21737 0.91216 1.02689 1.03601 1.21245 0.98383 0.99102 0.91309 0.89540 1.21078 0.87312 1.03639 1.01372 1.23004 0.91698 0.88305 0.84598 1.84843 1.27985 1.84404 1.31150 1.69231 1.42570 1.24462 1.00134 1.20955 0.94295 0.97846 0.87603 0.89416 1.20462 0.82239 0.87348 0.83952 1.90452 1.47397 1.26922 1.81450 1.43575 1.54615 1.15346 1.04450 1.19045 1.04028 1.24518 0.99539 0.90119 1.25992 0.95461 1.00410 0.96847 1.69996 1.06201 1.40105 1.33876 0.85454 0.77018 0.79772 0.79085 1.22353 1.21072 1.17466 1.22078 0.93882 0.84626 0.97756 1.22622 0.98369 0.97464 0.98278 1.22411 0.97672 0.97579 0.97015 1.22248 0.99260 0.97029 0.96533 1.22413 0.97733 1.00471 0.95748 1.22198 0.92601 1.01135 1.01098 0.91122 0.90102 0.92531 0.88259 0.86117 0.73737 0.93760 0.89697 0.93761 0.92971 0.89409 0.91456 0.89341 0.93463 0.89457 0.93246 0.93231 0.88833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.20 71.98 0.66 -1.35 16 2 C -0.08 -1.76 2.83 -10.60 -0.03 -1.79 16 3 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 4 C -0.09 -2.16 5.41 29.70 0.16 -2.00 16 5 C 0.35 11.64 7.85 88.58 0.70 12.33 16 6 O -0.49 -14.58 13.52 -81.96 -1.11 -15.69 16 7 N -0.63 -26.70 9.47 -441.55 -4.18 -30.88 16 8 C 0.11 4.40 2.64 44.39 0.12 4.52 16 9 H 0.09 3.49 6.65 -2.39 -0.02 3.48 16 10 C 0.47 25.43 6.18 87.66 0.54 25.97 16 11 O -0.58 -37.87 14.17 -3.08 -0.04 -37.91 16 12 N -0.46 -23.15 2.47 -609.38 -1.51 -24.65 16 13 C -0.34 -19.22 7.55 84.04 0.63 -18.59 16 14 H 0.08 4.34 6.93 -2.91 -0.02 4.32 16 15 C 0.02 1.12 4.34 84.93 0.37 1.49 16 16 N -0.87 -55.34 11.65 21.66 0.25 -55.09 16 17 Si 0.96 47.67 29.60 68.60 2.03 49.70 16 18 H -0.30 -15.38 7.11 99.48 0.71 -14.68 16 19 H -0.28 -13.79 7.11 99.48 0.71 -13.09 16 20 H -0.25 -11.31 7.11 99.48 0.71 -10.60 16 21 C 0.12 4.59 2.72 45.71 0.12 4.71 16 22 C -0.13 -4.81 6.43 31.70 0.20 -4.61 16 23 C -0.11 -2.94 6.91 31.91 0.22 -2.72 16 24 C -0.11 -3.09 6.83 31.67 0.22 -2.87 16 25 C -0.13 -3.95 6.18 31.31 0.19 -3.76 16 26 C -0.13 -4.08 4.40 30.74 0.14 -3.94 16 27 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.10 2.17 8.09 -2.39 -0.02 2.15 16 31 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.41 11.30 8.89 -74.06 -0.66 10.65 16 33 H 0.25 15.79 8.32 -92.71 -0.77 15.02 16 34 H 0.09 2.86 4.63 -2.39 -0.01 2.85 16 35 H 0.04 2.06 7.21 -2.39 -0.02 2.05 16 36 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 39 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 41 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 42 H 0.05 1.84 6.69 -2.38 -0.02 1.82 16 43 H 0.05 1.76 8.10 -2.39 -0.02 1.74 16 44 H 0.09 2.58 6.92 -2.39 -0.02 2.56 16 Total: -1.00 -81.75 343.63 0.03 -81.72 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: 0.34 Total: 25.42 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 4.24 Total: 7.38 kcal Atomic # 7 Polarization: -105.19 SS G_CDS: -5.43 Total: -110.62 kcal Atomic # 8 Polarization: -52.45 SS G_CDS: -1.15 Total: -53.60 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.70 kcal Total: -81.75 0.03 -81.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328834033.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.792 kcal (2) G-P(sol) polarization free energy of solvation -81.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds