Wall clock time and date at job start Tue Mar 31 2020 07:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47010 * 2 1 4 4 N 1.46496 * 109.47470 * 120.00074 * 2 1 3 5 5 C 1.34780 * 120.00139 * 275.00661 * 4 2 1 6 6 O 1.21279 * 120.00004 * 359.97438 * 5 4 2 7 7 C 1.50700 * 120.00020 * 179.97438 * 5 4 2 8 8 C 1.54966 * 110.92219 * 66.53397 * 7 5 4 9 9 C 1.54270 * 104.15667 * 156.29713 * 8 7 5 10 10 C 1.53869 * 106.64197 * 336.44460 * 9 8 7 11 11 C 1.54269 * 106.59914 * 359.97438 * 10 9 8 12 12 C 1.50705 * 109.47199 * 240.00127 * 2 1 3 13 13 O 1.21282 * 120.00039 * 249.35282 * 12 2 1 14 14 N 1.34778 * 119.99480 * 69.34697 * 12 2 1 15 15 C 1.37096 * 119.99467 * 185.04104 * 14 12 2 16 16 H 1.08006 * 120.00368 * 324.98898 * 15 14 12 17 17 C 1.38954 * 120.00042 * 144.99687 * 15 14 12 18 18 N 1.31411 * 119.99893 * 3.91679 * 17 15 14 19 19 Si 1.86799 * 119.99979 * 183.91938 * 17 15 14 20 20 H 1.48499 * 109.47319 * 59.99431 * 19 17 15 21 21 H 1.48500 * 109.47032 * 179.97438 * 19 17 15 22 22 H 1.48509 * 109.47177 * 299.99660 * 19 17 15 23 23 C 1.46500 * 120.00410 * 5.04513 * 14 12 2 24 24 C 1.52998 * 117.50117 * 132.05626 * 23 14 12 25 25 C 1.52994 * 117.49811 * 63.39273 * 23 14 12 26 26 H 1.09005 * 109.46887 * 174.61419 * 1 2 3 27 27 H 1.08999 * 109.47095 * 294.61065 * 1 2 3 28 28 H 1.08994 * 109.46839 * 54.61510 * 1 2 3 29 29 H 0.97002 * 120.00277 * 94.99190 * 4 2 1 30 30 H 1.08996 * 110.67376 * 303.22745 * 7 5 4 31 31 H 1.08998 * 110.47822 * 37.64864 * 8 7 5 32 32 H 1.08997 * 110.53037 * 274.97144 * 8 7 5 33 33 H 1.09006 * 110.03246 * 217.13753 * 9 8 7 34 34 H 1.08998 * 110.03730 * 95.75655 * 9 8 7 35 35 H 1.08999 * 110.03282 * 119.26221 * 10 9 8 36 36 H 1.09004 * 110.03394 * 240.64668 * 10 9 8 37 37 H 1.09002 * 110.48785 * 142.28970 * 11 10 9 38 38 H 1.09006 * 110.48691 * 264.80107 * 11 10 9 39 39 H 0.96995 * 119.99895 * 185.01074 * 18 17 15 40 40 H 1.09005 * 115.54423 * 277.72243 * 23 14 12 41 41 H 1.09002 * 117.49517 * 359.97438 * 24 23 14 42 42 H 1.08998 * 117.50036 * 145.01934 * 24 23 14 43 43 H 1.09001 * 117.49425 * 214.97738 * 25 23 14 44 44 H 1.08996 * 117.50320 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8589 1.1585 2.4116 7 6 2.6490 -0.7289 3.5877 8 6 4.1278 -1.1584 3.4143 9 6 4.6561 -1.2836 4.8583 10 6 3.7569 -0.3947 5.7351 11 6 2.7131 0.2409 4.7937 12 6 2.0324 -0.7104 -1.2305 13 8 2.5837 -1.7857 -1.1273 14 7 1.8688 -0.1507 -2.4456 15 6 2.2317 -0.8415 -3.5729 16 1 3.0921 -1.4941 -3.5528 17 6 1.4927 -0.7019 -4.7413 18 7 0.4930 0.1497 -4.7886 19 14 1.9202 -1.7250 -6.2446 20 1 1.7981 -3.1673 -5.9129 21 1 0.9882 -1.3915 -7.3516 22 1 3.3138 -1.4299 -6.6643 23 6 1.3034 1.1958 -2.5619 24 6 2.0318 2.1923 -3.4660 25 6 2.0954 2.3502 -1.9447 26 1 -0.3633 -1.0232 -0.0965 27 1 -0.3633 0.4280 0.9343 28 1 -0.3633 0.5951 -0.8378 29 1 2.2491 -1.6318 1.1526 30 1 2.0217 -1.5901 3.8175 31 1 4.6847 -0.3964 2.8691 32 1 4.1895 -2.1179 2.9010 33 1 5.6882 -0.9365 4.9096 34 1 4.5941 -2.3200 5.1901 35 1 3.2578 -0.9999 6.4919 36 1 4.3527 0.3832 6.2127 37 1 1.7425 0.3021 5.2861 38 1 3.0404 1.2301 4.4735 39 1 -0.0681 0.1954 -5.5785 40 1 0.2156 1.2538 -2.5225 41 1 2.9319 1.8461 -3.9740 42 1 1.4233 2.9062 -4.0211 43 1 1.5286 3.1680 -1.4997 44 1 3.0368 2.1079 -1.4518 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331495821.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:39 Heat of formation + Delta-G solvation = -54.866161 kcal Electronic energy + Delta-G solvation = -24678.424213 eV Core-core repulsion = 21210.151688 eV Total energy + Delta-G solvation = -3468.272525 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.04961 -38.87226 -37.12363 -36.19208 -34.39947 -33.00063 -31.41507 -30.49386 -28.81439 -28.57265 -25.41129 -23.79878 -22.08950 -21.37489 -21.12147 -20.31704 -19.62578 -19.03728 -17.36463 -16.86380 -15.91609 -15.72946 -15.36071 -15.15215 -14.80824 -14.50537 -14.06575 -13.73146 -13.60806 -13.38707 -13.22639 -12.94115 -12.19592 -12.07285 -11.88634 -11.71248 -11.37289 -11.27428 -11.17712 -11.15657 -11.12699 -10.93580 -10.80709 -10.67617 -10.57782 -10.52252 -10.39596 -9.70841 -9.46436 -9.42380 -8.85776 -8.76803 -8.36866 -7.67348 -6.34273 -4.01335 2.90533 3.17369 3.23211 3.25934 3.45792 3.76605 4.11919 4.43153 4.53073 4.68979 4.72063 4.74965 5.03477 5.21762 5.27723 5.35481 5.43124 5.49503 5.51821 5.56727 5.75035 5.76348 5.79313 5.79841 5.82262 5.94445 5.97804 6.11955 6.12539 6.20585 6.27799 6.29226 6.31489 6.32319 6.61264 6.76187 6.83379 6.96247 7.17744 7.52316 7.90834 8.13046 8.41567 8.56170 9.10326 9.32227 9.87266 10.71375 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026078 B = 0.003915 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.451465 B = 7150.138087 C = 7659.280225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.126 3.874 3 H 0.105 0.895 4 N -0.705 5.705 5 C 0.519 3.481 6 O -0.549 6.549 7 C -0.115 4.115 8 C -0.114 4.114 9 C -0.123 4.123 10 C -0.125 4.125 11 C -0.104 4.104 12 C 0.459 3.541 13 O -0.583 6.583 14 N -0.414 5.414 15 C -0.314 4.314 16 H 0.092 0.908 17 C 0.046 3.954 18 N -0.870 5.870 19 Si 0.921 3.079 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.274 1.274 23 C 0.126 3.874 24 C -0.134 4.134 25 C -0.228 4.228 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.407 0.593 30 H 0.099 0.901 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.268 0.732 40 H 0.109 0.891 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.232 0.820 13.603 13.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.018 3.982 3 H 0.123 0.877 4 N -0.357 5.357 5 C 0.305 3.695 6 O -0.427 6.427 7 C -0.136 4.136 8 C -0.152 4.152 9 C -0.161 4.161 10 C -0.163 4.163 11 C -0.142 4.142 12 C 0.246 3.754 13 O -0.468 6.468 14 N -0.132 5.132 15 C -0.442 4.442 16 H 0.110 0.890 17 C -0.159 4.159 18 N -0.507 5.507 19 Si 0.747 3.253 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.199 1.199 23 C 0.021 3.979 24 C -0.172 4.172 25 C -0.266 4.266 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.244 0.756 30 H 0.118 0.882 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.126 0.874 41 H 0.108 0.892 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.191 1.245 13.460 13.694 hybrid contribution 0.112 -0.874 -1.027 1.353 sum 2.304 0.371 12.433 12.650 Atomic orbital electron populations 1.22027 0.93843 1.02546 1.02559 1.20841 0.95171 0.97928 0.84303 0.87746 1.45881 1.66179 1.14864 1.08812 1.20459 0.77417 0.87227 0.84395 1.90659 1.50766 1.16038 1.85202 1.22309 0.98096 0.99599 0.93585 1.22355 0.93478 1.02074 0.97308 1.22122 0.99375 0.99958 0.94598 1.22158 0.97260 0.98920 0.97963 1.22211 0.99155 0.99016 0.93786 1.20034 0.84537 0.86298 0.84530 1.90492 1.47259 1.23193 1.85843 1.42920 1.54397 1.11487 1.04423 1.19405 1.12696 1.24682 0.87389 0.89034 1.25375 0.95253 0.96035 0.99198 1.69856 1.17425 1.33133 1.30265 0.86097 0.78294 0.80434 0.80435 1.19836 1.20941 1.19923 1.21258 0.95063 0.79397 1.02145 1.22668 1.02478 1.01349 0.90671 1.23593 1.02829 1.02321 0.97903 0.92476 0.92227 0.90567 0.75649 0.88249 0.91038 0.90684 0.91686 0.91671 0.91878 0.91739 0.91417 0.90186 0.92140 0.87389 0.89245 0.89619 0.89254 0.89906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.31 37.16 0.35 -2.36 16 2 C 0.13 2.46 2.26 -69.08 -0.16 2.30 16 3 H 0.10 2.10 5.25 -51.93 -0.27 1.83 16 4 N -0.71 -12.14 5.00 -54.93 -0.27 -12.42 16 5 C 0.52 8.35 7.11 -10.98 -0.08 8.27 16 6 O -0.55 -10.42 15.39 5.56 0.09 -10.34 16 7 C -0.11 -1.38 3.28 -89.74 -0.29 -1.67 16 8 C -0.11 -1.26 6.28 -25.03 -0.16 -1.42 16 9 C -0.12 -1.10 6.80 -25.61 -0.17 -1.28 16 10 C -0.13 -1.11 6.80 -25.61 -0.17 -1.29 16 11 C -0.10 -1.16 5.90 -25.07 -0.15 -1.31 16 12 C 0.46 10.86 6.87 -10.98 -0.08 10.79 16 13 O -0.58 -15.24 15.64 5.56 0.09 -15.15 16 14 N -0.41 -10.22 2.91 -107.73 -0.31 -10.53 16 15 C -0.31 -8.45 8.62 -14.93 -0.13 -8.58 16 16 H 0.09 2.58 7.59 -52.48 -0.40 2.18 16 17 C 0.05 1.19 5.19 -17.47 -0.09 1.10 16 18 N -0.87 -22.09 10.63 55.50 0.59 -21.50 16 19 Si 0.92 20.35 29.56 -169.99 -5.02 15.32 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 23 C 0.13 2.76 2.59 -67.93 -0.18 2.58 16 24 C -0.13 -2.75 8.88 -26.69 -0.24 -2.98 16 25 C -0.23 -4.28 8.51 -26.69 -0.23 -4.51 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.08 1.38 5.84 -51.93 -0.30 1.07 16 29 H 0.41 6.78 7.72 -40.82 -0.32 6.47 16 30 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 0.88 8.05 -51.93 -0.42 0.47 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.08 1.03 7.45 -51.93 -0.39 0.65 16 39 H 0.27 6.55 8.32 -40.82 -0.34 6.21 16 40 H 0.11 2.40 6.68 -51.93 -0.35 2.06 16 41 H 0.09 1.97 7.99 -51.93 -0.42 1.56 16 42 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 43 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 44 H 0.08 1.60 7.84 -51.93 -0.41 1.20 16 LS Contribution 351.15 15.07 5.29 5.29 Total: -1.00 -29.58 351.15 -8.38 -37.96 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -7.05 Total: 11.72 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -1.77 Total: -0.35 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: 0.00 Total: -44.44 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: 0.17 Total: -25.49 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.58 -8.38 -37.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331495821.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.908 kcal (2) G-P(sol) polarization free energy of solvation -29.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds