Wall clock time and date at job start Tue Mar 31 2020 06:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.29928 * 2 1 4 4 C 1.52907 * 109.14120 * 119.47033 * 2 1 3 5 5 C 1.53346 * 108.68116 * 170.93522 * 4 2 1 6 6 H 1.09003 * 109.70288 * 52.23667 * 5 4 2 7 7 C 1.50708 * 109.66968 * 172.74627 * 5 4 2 8 8 O 1.21284 * 119.99641 * 30.99368 * 7 5 4 9 9 N 1.34772 * 119.99979 * 210.99146 * 7 5 4 10 10 C 1.46502 * 120.00326 * 5.26697 * 9 7 5 11 11 C 1.50704 * 109.46928 * 267.77341 * 10 9 7 12 12 H 1.07999 * 120.00033 * 359.97438 * 11 10 9 13 13 C 1.37872 * 119.99754 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00383 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99953 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47509 * 59.99783 * 15 13 11 17 17 H 1.48499 * 109.47490 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46840 * 299.99557 * 15 13 11 19 19 C 1.46504 * 119.99770 * 185.26782 * 9 7 5 20 20 C 1.53004 * 109.47176 * 84.85673 * 19 9 7 21 21 C 1.52995 * 117.51831 * 116.28260 * 20 19 9 22 22 C 1.52996 * 117.49786 * 184.91328 * 20 19 9 23 23 C 1.53062 * 108.42895 * 292.48325 * 5 4 2 24 24 C 1.50172 * 109.89417 * 48.90262 * 23 5 4 25 25 O 1.21280 * 118.24707 * 162.39228 * 24 23 5 26 26 N 1.33351 * 123.50462 * 342.42004 * 24 23 5 27 27 H 1.09001 * 109.46794 * 179.57832 * 1 2 3 28 28 H 1.09000 * 109.47054 * 299.58077 * 1 2 3 29 29 H 1.09002 * 109.46718 * 59.58098 * 1 2 3 30 30 H 1.08999 * 109.58034 * 51.18808 * 4 2 1 31 31 H 1.08994 * 109.60973 * 290.70342 * 4 2 1 32 32 H 1.08999 * 109.46780 * 27.76913 * 10 9 7 33 33 H 1.08989 * 109.47071 * 147.77559 * 10 9 7 34 34 H 0.96996 * 120.00460 * 180.02562 * 14 13 11 35 35 H 1.08998 * 109.47056 * 324.85323 * 19 9 7 36 36 H 1.09001 * 109.47140 * 204.85157 * 19 9 7 37 37 H 1.09007 * 115.54950 * 330.57970 * 20 19 9 38 38 H 1.09007 * 117.49804 * 214.96970 * 21 20 19 39 39 H 1.08998 * 117.50290 * 359.97438 * 21 20 19 40 40 H 1.08994 * 117.50397 * 359.97438 * 22 20 19 41 41 H 1.09004 * 117.49582 * 144.99411 * 22 20 19 42 42 H 1.09002 * 109.39980 * 169.02963 * 23 5 4 43 43 H 1.09005 * 109.40349 * 288.77193 * 23 5 4 44 44 H 0.97007 * 117.94394 * 182.22367 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8903 1.0287 0.0000 4 6 2.0315 -0.7107 1.2576 5 6 3.5477 -0.9068 1.1395 6 1 4.0244 0.0455 0.9068 7 6 4.0926 -1.4429 2.4383 8 8 3.4037 -2.1563 3.1365 9 7 5.3454 -1.1296 2.8240 10 6 6.1364 -0.1770 2.0408 11 6 6.9583 -0.9243 1.0224 12 1 6.8979 -2.0010 0.9646 13 6 7.7882 -0.2334 0.1652 14 7 7.8622 1.0778 0.2359 15 14 8.8065 -1.1595 -1.0976 16 1 7.9044 -1.9153 -2.0032 17 1 9.6084 -0.1940 -1.8914 18 1 9.7161 -2.1054 -0.4025 19 6 5.9163 -1.7417 4.0264 20 6 6.5202 -3.1013 3.6689 21 6 8.0307 -3.2715 3.8424 22 6 7.0672 -3.9546 4.8150 23 6 3.8199 -1.9079 0.0141 24 6 3.0473 -1.5192 -1.2136 25 8 3.3833 -1.9943 -2.2776 26 7 2.0118 -0.6791 -1.1963 27 1 -0.3633 -1.0277 -0.0076 28 1 -0.3633 0.5073 0.8937 29 1 -0.3633 0.5204 -0.8862 30 1 1.5432 -1.6810 1.3481 31 1 1.8085 -0.1031 2.1346 32 1 5.4683 0.5166 1.5303 33 1 6.7983 0.3783 2.7052 34 1 8.4457 1.5639 -0.3674 35 1 5.1330 -1.8767 4.7722 36 1 6.6943 -1.0934 4.4297 37 1 6.0475 -3.6213 2.8356 38 1 8.5519 -3.9035 3.1231 39 1 8.5948 -2.4147 4.2108 40 1 6.9974 -3.5472 5.8236 41 1 6.9544 -5.0358 4.7357 42 1 4.8855 -1.9137 -0.2155 43 1 3.5143 -2.9042 0.3339 44 1 1.5500 -0.5096 -2.0324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332186838.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:35 Heat of formation + Delta-G solvation = -60.414502 kcal Electronic energy + Delta-G solvation = -25136.382022 eV Core-core repulsion = 21667.868903 eV Total energy + Delta-G solvation = -3468.513120 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.40328 -39.00246 -37.02148 -36.35886 -34.72986 -32.95427 -32.48612 -30.93386 -27.97612 -27.05690 -26.47138 -23.71969 -22.75880 -22.11785 -21.95295 -20.36372 -19.08456 -18.19051 -17.01960 -16.64521 -16.36866 -15.94932 -15.78712 -14.97925 -14.70959 -14.43155 -14.28554 -14.08002 -13.70027 -13.13705 -12.95541 -12.83110 -12.63005 -12.32281 -12.10712 -12.07001 -11.60062 -11.42931 -11.34329 -11.22796 -11.12960 -10.95951 -10.87456 -10.61522 -10.39716 -10.25676 -9.94377 -9.74683 -9.69843 -9.39467 -8.94537 -8.89081 -8.52142 -7.79825 -6.18653 -4.24773 2.97500 3.22262 3.28502 3.32678 3.38896 3.50025 3.77301 4.29963 4.35900 4.71888 4.78930 4.88127 5.11981 5.15391 5.20267 5.30064 5.33069 5.37264 5.42143 5.48601 5.62814 5.73474 5.76534 5.85603 5.94049 5.94741 6.04058 6.09175 6.14508 6.21701 6.31989 6.39356 6.47504 6.49070 6.64492 6.78780 7.00444 7.13345 7.47574 7.57240 7.75859 8.03302 8.26826 8.51066 8.77290 8.93302 9.43272 10.88124 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011415 B = 0.006931 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.413051 B = 4038.800866 C = 5544.812886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.137 3.863 3 H 0.077 0.923 4 C -0.112 4.112 5 C -0.107 4.107 6 H 0.110 0.890 7 C 0.523 3.477 8 O -0.570 6.570 9 N -0.590 5.590 10 C 0.236 3.764 11 C -0.531 4.531 12 H 0.063 0.937 13 C 0.069 3.931 14 N -0.892 5.892 15 Si 0.888 3.112 16 H -0.271 1.271 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.154 3.846 20 C -0.145 4.145 21 C -0.167 4.167 22 C -0.189 4.189 23 C -0.122 4.122 24 C 0.530 3.470 25 O -0.560 6.560 26 N -0.719 5.719 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.039 0.961 33 H 0.035 0.965 34 H 0.265 0.735 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.127 0.873 43 H 0.095 0.905 44 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.346 -1.040 4.344 10.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.032 3.968 3 H 0.095 0.905 4 C -0.150 4.150 5 C -0.129 4.129 6 H 0.128 0.872 7 C 0.311 3.689 8 O -0.451 6.451 9 N -0.319 5.319 10 C 0.117 3.883 11 C -0.570 4.570 12 H 0.082 0.918 13 C -0.135 4.135 14 N -0.530 5.530 15 Si 0.715 3.285 16 H -0.197 1.197 17 H -0.212 1.212 18 H -0.201 1.201 19 C 0.030 3.970 20 C -0.164 4.164 21 C -0.204 4.204 22 C -0.227 4.227 23 C -0.162 4.162 24 C 0.318 3.682 25 O -0.438 6.438 26 N -0.372 5.372 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.118 0.882 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.145 0.855 43 H 0.113 0.887 44 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -9.274 -1.504 4.303 10.334 hybrid contribution 0.671 -0.244 -1.119 1.327 sum -8.603 -1.748 3.184 9.339 Atomic orbital electron populations 1.22154 0.94393 1.02816 1.02625 1.20980 0.94277 0.96453 0.85132 0.90546 1.21801 0.94558 1.02108 0.96582 1.21389 0.95994 1.01821 0.93651 0.87233 1.20208 0.81648 0.80492 0.86578 1.90602 1.59080 1.39780 1.55674 1.48231 1.13594 1.43757 1.26304 1.19527 0.90686 0.87382 0.90749 1.21382 1.24808 0.93915 1.16855 0.91846 1.24885 0.96562 0.94771 0.97238 1.69891 1.38616 1.06153 1.38325 0.86695 0.80477 0.79757 0.81576 1.19657 1.21235 1.20115 1.20826 0.97190 0.91619 0.87321 1.22592 0.96285 0.97668 0.99861 1.22905 0.92911 1.02712 1.01881 1.22930 1.05996 0.98486 0.95239 1.21600 1.03895 0.99510 0.91156 1.20172 0.79439 0.77523 0.91034 1.90731 1.67176 1.54287 1.31637 1.45627 1.33021 1.46768 1.11737 0.91908 0.90910 0.92181 0.90221 0.89822 0.94314 0.94696 0.92516 0.90976 0.90750 0.88173 0.89381 0.88833 0.89268 0.89494 0.85494 0.88665 0.77099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.39 37.16 0.35 -1.04 16 2 C 0.14 1.56 3.68 -68.38 -0.25 1.31 16 3 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 4 C -0.11 -1.51 4.08 -26.60 -0.11 -1.62 16 5 C -0.11 -1.81 2.11 -91.56 -0.19 -2.00 16 6 H 0.11 1.96 5.72 -51.93 -0.30 1.67 16 7 C 0.52 9.96 6.66 -10.98 -0.07 9.89 16 8 O -0.57 -11.76 16.00 5.55 0.09 -11.67 16 9 N -0.59 -11.51 2.47 -175.05 -0.43 -11.94 16 10 C 0.24 5.21 4.99 -5.19 -0.03 5.19 16 11 C -0.53 -12.94 8.16 -34.44 -0.28 -13.22 16 12 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 13 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 14 N -0.89 -23.91 13.29 55.43 0.74 -23.18 16 15 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 16 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 19 C 0.15 2.71 5.73 -4.04 -0.02 2.69 16 20 C -0.14 -2.49 5.98 -90.62 -0.54 -3.03 16 21 C -0.17 -2.64 10.18 -26.73 -0.27 -2.92 16 22 C -0.19 -2.67 10.25 -26.73 -0.27 -2.94 16 23 C -0.12 -2.19 5.34 -28.11 -0.15 -2.34 16 24 C 0.53 9.47 7.71 -11.87 -0.09 9.38 16 25 O -0.56 -12.11 17.78 5.56 0.10 -12.01 16 26 N -0.72 -9.89 5.12 -54.86 -0.28 -10.17 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 1.11 8.06 -51.93 -0.42 0.69 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.04 0.88 5.78 -51.93 -0.30 0.58 16 33 H 0.04 0.82 7.89 -51.93 -0.41 0.41 16 34 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 35 H 0.07 1.24 7.51 -51.93 -0.39 0.85 16 36 H 0.07 1.25 7.59 -51.93 -0.39 0.86 16 37 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 38 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.09 1.46 8.03 -51.93 -0.42 1.04 16 40 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.13 2.64 6.78 -51.93 -0.35 2.29 16 43 H 0.10 1.66 8.09 -51.93 -0.42 1.24 16 44 H 0.39 4.80 8.67 -40.82 -0.35 4.45 16 LS Contribution 358.67 15.07 5.41 5.41 Total: -1.00 -29.64 358.67 -8.54 -38.17 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -7.10 Total: 8.67 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -2.03 Total: 1.02 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: 0.02 Total: -45.29 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: 0.19 Total: -23.67 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.64 -8.54 -38.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332186838.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.240 kcal (2) G-P(sol) polarization free energy of solvation -29.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds