Wall clock time and date at job start Tue Mar 31 2020 06:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.29928 * 2 1 4 4 C 1.52907 * 109.14120 * 119.47033 * 2 1 3 5 5 C 1.53346 * 108.68116 * 170.93522 * 4 2 1 6 6 H 1.09003 * 109.70288 * 52.23667 * 5 4 2 7 7 C 1.50708 * 109.66968 * 172.74627 * 5 4 2 8 8 O 1.21284 * 119.99641 * 30.99368 * 7 5 4 9 9 N 1.34772 * 119.99979 * 210.99146 * 7 5 4 10 10 C 1.46502 * 120.00326 * 5.26697 * 9 7 5 11 11 C 1.50704 * 109.46928 * 267.77341 * 10 9 7 12 12 H 1.07999 * 120.00033 * 359.97438 * 11 10 9 13 13 C 1.37872 * 119.99754 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00383 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99953 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47509 * 59.99783 * 15 13 11 17 17 H 1.48499 * 109.47490 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46840 * 299.99557 * 15 13 11 19 19 C 1.46504 * 119.99770 * 185.26782 * 9 7 5 20 20 C 1.53004 * 109.47176 * 84.85673 * 19 9 7 21 21 C 1.52995 * 117.51831 * 116.28260 * 20 19 9 22 22 C 1.52996 * 117.49786 * 184.91328 * 20 19 9 23 23 C 1.53062 * 108.42895 * 292.48325 * 5 4 2 24 24 C 1.50172 * 109.89417 * 48.90262 * 23 5 4 25 25 O 1.21280 * 118.24707 * 162.39228 * 24 23 5 26 26 N 1.33351 * 123.50462 * 342.42004 * 24 23 5 27 27 H 1.09001 * 109.46794 * 179.57832 * 1 2 3 28 28 H 1.09000 * 109.47054 * 299.58077 * 1 2 3 29 29 H 1.09002 * 109.46718 * 59.58098 * 1 2 3 30 30 H 1.08999 * 109.58034 * 51.18808 * 4 2 1 31 31 H 1.08994 * 109.60973 * 290.70342 * 4 2 1 32 32 H 1.08999 * 109.46780 * 27.76913 * 10 9 7 33 33 H 1.08989 * 109.47071 * 147.77559 * 10 9 7 34 34 H 0.96996 * 120.00460 * 180.02562 * 14 13 11 35 35 H 1.08998 * 109.47056 * 324.85323 * 19 9 7 36 36 H 1.09001 * 109.47140 * 204.85157 * 19 9 7 37 37 H 1.09007 * 115.54950 * 330.57970 * 20 19 9 38 38 H 1.09007 * 117.49804 * 214.96970 * 21 20 19 39 39 H 1.08998 * 117.50290 * 359.97438 * 21 20 19 40 40 H 1.08994 * 117.50397 * 359.97438 * 22 20 19 41 41 H 1.09004 * 117.49582 * 144.99411 * 22 20 19 42 42 H 1.09002 * 109.39980 * 169.02963 * 23 5 4 43 43 H 1.09005 * 109.40349 * 288.77193 * 23 5 4 44 44 H 0.97007 * 117.94394 * 182.22367 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8903 1.0287 0.0000 4 6 2.0315 -0.7107 1.2576 5 6 3.5477 -0.9068 1.1395 6 1 4.0244 0.0455 0.9068 7 6 4.0926 -1.4429 2.4383 8 8 3.4037 -2.1563 3.1365 9 7 5.3454 -1.1296 2.8240 10 6 6.1364 -0.1770 2.0408 11 6 6.9583 -0.9243 1.0224 12 1 6.8979 -2.0010 0.9646 13 6 7.7882 -0.2334 0.1652 14 7 7.8622 1.0778 0.2359 15 14 8.8065 -1.1595 -1.0976 16 1 7.9044 -1.9153 -2.0032 17 1 9.6084 -0.1940 -1.8914 18 1 9.7161 -2.1054 -0.4025 19 6 5.9163 -1.7417 4.0264 20 6 6.5202 -3.1013 3.6689 21 6 8.0307 -3.2715 3.8424 22 6 7.0672 -3.9546 4.8150 23 6 3.8199 -1.9079 0.0141 24 6 3.0473 -1.5192 -1.2136 25 8 3.3833 -1.9943 -2.2776 26 7 2.0118 -0.6791 -1.1963 27 1 -0.3633 -1.0277 -0.0076 28 1 -0.3633 0.5073 0.8937 29 1 -0.3633 0.5204 -0.8862 30 1 1.5432 -1.6810 1.3481 31 1 1.8085 -0.1031 2.1346 32 1 5.4683 0.5166 1.5303 33 1 6.7983 0.3783 2.7052 34 1 8.4457 1.5639 -0.3674 35 1 5.1330 -1.8767 4.7722 36 1 6.6943 -1.0934 4.4297 37 1 6.0475 -3.6213 2.8356 38 1 8.5519 -3.9035 3.1231 39 1 8.5948 -2.4147 4.2108 40 1 6.9974 -3.5472 5.8236 41 1 6.9544 -5.0358 4.7357 42 1 4.8855 -1.9137 -0.2155 43 1 3.5143 -2.9042 0.3339 44 1 1.5500 -0.5096 -2.0324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332186838.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:34 Heat of formation + Delta-G solvation = -78.072162 kcal Electronic energy + Delta-G solvation = -25137.147716 eV Core-core repulsion = 21667.868903 eV Total energy + Delta-G solvation = -3469.278813 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.79836 -40.50021 -38.36849 -37.65694 -36.39055 -34.40011 -34.27618 -32.06465 -29.68308 -28.38444 -27.86062 -25.27554 -24.37600 -23.25897 -23.15951 -21.73631 -20.38624 -19.71132 -18.56307 -18.26754 -17.90357 -17.36170 -17.22385 -16.48935 -16.24171 -15.93845 -15.77305 -15.34473 -14.99868 -14.56357 -14.44998 -14.17631 -14.07908 -13.65559 -13.51829 -13.32142 -13.07380 -12.98348 -12.73483 -12.57105 -12.51908 -12.37148 -12.30769 -12.17969 -11.85213 -11.77872 -11.61495 -11.30514 -11.21204 -10.73840 -10.60690 -10.36162 -10.10497 -9.45433 -8.18229 -6.27031 1.38262 1.42460 1.46431 1.52964 1.69990 2.26959 2.29652 2.42832 3.03034 3.14210 3.44096 3.64270 3.73824 3.80405 3.90980 4.05052 4.15515 4.17790 4.19796 4.35825 4.42364 4.47104 4.63608 4.76353 4.77998 4.78974 4.82732 4.92241 4.97873 4.99466 5.06638 5.08388 5.20367 5.28075 5.30485 5.32462 5.38272 5.71432 5.85935 5.86543 6.09955 6.27792 6.59171 6.86088 7.17214 7.30995 7.44884 8.87251 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011415 B = 0.006931 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.413051 B = 4038.800866 C = 5544.812886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.135 3.865 3 H 0.090 0.910 4 C -0.106 4.106 5 C -0.102 4.102 6 H 0.099 0.901 7 C 0.522 3.478 8 O -0.583 6.583 9 N -0.593 5.593 10 C 0.251 3.749 11 C -0.521 4.521 12 H 0.053 0.947 13 C 0.030 3.970 14 N -0.917 5.917 15 Si 0.931 3.069 16 H -0.283 1.283 17 H -0.284 1.284 18 H -0.269 1.269 19 C 0.153 3.847 20 C -0.170 4.170 21 C -0.173 4.173 22 C -0.157 4.157 23 C -0.116 4.116 24 C 0.529 3.471 25 O -0.605 6.605 26 N -0.701 5.701 27 H 0.059 0.941 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.035 0.965 33 H 0.023 0.977 34 H 0.265 0.735 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.635 -0.848 5.293 11.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.031 3.969 3 H 0.108 0.892 4 C -0.144 4.144 5 C -0.123 4.123 6 H 0.117 0.883 7 C 0.311 3.689 8 O -0.465 6.465 9 N -0.322 5.322 10 C 0.131 3.869 11 C -0.560 4.560 12 H 0.072 0.928 13 C -0.170 4.170 14 N -0.557 5.557 15 Si 0.758 3.242 16 H -0.209 1.209 17 H -0.209 1.209 18 H -0.194 1.194 19 C 0.030 3.970 20 C -0.189 4.189 21 C -0.210 4.210 22 C -0.195 4.195 23 C -0.156 4.156 24 C 0.317 3.683 25 O -0.487 6.487 26 N -0.353 5.353 27 H 0.079 0.921 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.118 0.882 32 H 0.053 0.947 33 H 0.041 0.959 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.128 0.872 41 H 0.119 0.881 42 H 0.112 0.888 43 H 0.115 0.885 44 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -10.592 -1.295 5.281 11.906 hybrid contribution 1.034 -0.326 -1.352 1.732 sum -9.558 -1.621 3.929 10.461 Atomic orbital electron populations 1.22114 0.91380 1.03276 1.04432 1.21225 0.96518 0.96216 0.82951 0.89213 1.21819 0.91538 1.02654 0.98419 1.21358 0.98552 1.00481 0.91935 0.88318 1.20526 0.81291 0.80086 0.87016 1.90586 1.59262 1.40367 1.56319 1.48210 1.13670 1.43592 1.26715 1.19180 0.90277 0.87370 0.90113 1.21511 1.24268 0.93472 1.16768 0.92832 1.25386 0.97679 0.95300 0.98658 1.69953 1.39579 1.06906 1.39216 0.86010 0.79347 0.78885 0.79928 1.20893 1.20934 1.19432 1.20944 0.97533 0.91911 0.86640 1.22475 0.97155 0.98103 1.01179 1.22934 0.92103 1.03195 1.02763 1.23025 1.02453 0.98883 0.95099 1.21427 1.02044 1.00185 0.91986 1.20071 0.80188 0.78004 0.90036 1.90706 1.68782 1.56410 1.32846 1.45566 1.31397 1.44995 1.13329 0.92142 0.89047 0.90467 0.90474 0.88237 0.94745 0.95924 0.92615 0.90403 0.90082 0.90760 0.89764 0.88662 0.87163 0.88136 0.88779 0.88506 0.75787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.39 71.98 0.68 -1.41 16 2 C 0.13 2.73 3.68 45.10 0.17 2.90 16 3 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 4 C -0.11 -2.66 4.08 30.68 0.13 -2.53 16 5 C -0.10 -3.42 2.11 -11.40 -0.02 -3.44 16 6 H 0.10 3.54 5.72 -2.39 -0.01 3.53 16 7 C 0.52 19.81 6.66 87.66 0.58 20.40 16 8 O -0.58 -23.66 16.00 -3.04 -0.05 -23.70 16 9 N -0.59 -23.25 2.47 -826.13 -2.04 -25.28 16 10 C 0.25 11.24 4.99 85.63 0.43 11.66 16 11 C -0.52 -25.86 8.16 25.60 0.21 -25.65 16 12 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 13 C 0.03 1.57 5.46 84.65 0.46 2.03 16 14 N -0.92 -49.57 13.29 21.45 0.28 -49.29 16 15 Si 0.93 43.04 29.54 68.60 2.03 45.06 16 16 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 17 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 19 C 0.15 5.30 5.73 86.38 0.49 5.80 16 20 C -0.17 -5.77 5.98 -10.80 -0.06 -5.83 16 21 C -0.17 -5.32 10.18 30.59 0.31 -5.01 16 22 C -0.16 -4.11 10.25 30.59 0.31 -3.80 16 23 C -0.12 -4.28 5.34 29.70 0.16 -4.12 16 24 C 0.53 18.99 7.71 87.71 0.68 19.67 16 25 O -0.60 -26.70 17.78 -3.03 -0.05 -26.75 16 26 N -0.70 -18.30 5.12 -446.66 -2.29 -20.59 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.09 0.96 8.14 -2.39 -0.02 0.95 16 29 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 2.01 8.06 -2.39 -0.02 1.99 16 31 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.03 1.59 5.78 -2.39 -0.01 1.58 16 33 H 0.02 1.08 7.89 -2.39 -0.02 1.06 16 34 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 35 H 0.08 2.60 7.51 -2.39 -0.02 2.58 16 36 H 0.08 2.67 7.59 -2.39 -0.02 2.65 16 37 H 0.07 2.90 8.14 -2.38 -0.02 2.88 16 38 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 39 H 0.09 2.88 8.03 -2.39 -0.02 2.86 16 40 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.10 2.38 8.14 -2.38 -0.02 2.36 16 42 H 0.09 4.11 6.78 -2.39 -0.02 4.09 16 43 H 0.10 3.47 8.09 -2.38 -0.02 3.45 16 44 H 0.41 9.14 8.67 -92.70 -0.80 8.33 16 Total: -1.00 -64.20 358.67 2.59 -61.61 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: 0.19 Total: 28.29 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 4.52 Total: 10.65 kcal Atomic # 7 Polarization: -91.12 SS G_CDS: -4.04 Total: -95.16 kcal Atomic # 8 Polarization: -50.35 SS G_CDS: -0.10 Total: -50.45 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -64.20 2.59 -61.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332186838.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.467 kcal (2) G-P(sol) polarization free energy of solvation -64.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds