Wall clock time and date at job start Tue Mar 31 2020 06:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.30076 * 2 1 4 4 C 1.52916 * 109.30365 * 119.59120 * 2 1 3 5 5 C 1.53341 * 108.67846 * 69.34476 * 4 2 1 6 6 H 1.08993 * 109.67335 * 307.76914 * 5 4 2 7 7 C 1.50704 * 109.67627 * 187.26446 * 5 4 2 8 8 O 1.21278 * 119.99674 * 334.78357 * 7 5 4 9 9 N 1.34771 * 119.99946 * 154.77785 * 7 5 4 10 10 C 1.46499 * 120.00223 * 174.81030 * 9 7 5 11 11 C 1.50693 * 109.47463 * 89.99828 * 10 9 7 12 12 H 1.08003 * 120.00108 * 0.02562 * 11 10 9 13 13 C 1.37880 * 120.00264 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00141 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99865 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47037 * 89.99791 * 15 13 11 17 17 H 1.48497 * 109.47077 * 209.99774 * 15 13 11 18 18 H 1.48497 * 109.47015 * 329.99857 * 15 13 11 19 19 C 1.46503 * 119.99835 * 354.81094 * 9 7 5 20 20 C 1.53008 * 109.47144 * 275.00712 * 19 9 7 21 21 C 1.52998 * 117.49903 * 243.75272 * 20 19 9 22 22 C 1.52997 * 117.50006 * 175.08792 * 20 19 9 23 23 C 1.53069 * 108.42214 * 67.53366 * 5 4 2 24 24 C 1.50178 * 109.88915 * 311.08458 * 23 5 4 25 25 O 1.21278 * 118.24709 * 197.61982 * 24 23 5 26 26 N 1.33354 * 123.50628 * 17.61974 * 24 23 5 27 27 H 1.09005 * 109.46792 * 300.41163 * 1 2 3 28 28 H 1.08998 * 109.47202 * 60.41252 * 1 2 3 29 29 H 1.09002 * 109.47333 * 180.41719 * 1 2 3 30 30 H 1.09008 * 109.60023 * 309.58957 * 4 2 1 31 31 H 1.09002 * 109.60330 * 189.10944 * 4 2 1 32 32 H 1.09007 * 109.46776 * 329.99715 * 10 9 7 33 33 H 1.08999 * 109.47155 * 210.00368 * 10 9 7 34 34 H 0.96998 * 120.00287 * 180.02562 * 14 13 11 35 35 H 1.08995 * 109.47792 * 35.00916 * 19 9 7 36 36 H 1.09000 * 109.47384 * 155.01456 * 19 9 7 37 37 H 1.09003 * 115.54605 * 29.41809 * 20 19 9 38 38 H 1.08992 * 117.50452 * 359.97438 * 21 20 19 39 39 H 1.09003 * 117.49680 * 145.02789 * 21 20 19 40 40 H 1.09000 * 117.50012 * 214.97940 * 22 20 19 41 41 H 1.09002 * 117.49940 * 359.97438 * 22 20 19 42 42 H 1.09008 * 109.40296 * 71.23020 * 23 5 4 43 43 H 1.09005 * 109.40474 * 190.97076 * 23 5 4 44 44 H 0.96994 * 117.94551 * 177.75535 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8903 1.0287 0.0000 4 6 2.0355 -0.7127 1.2550 5 6 1.7142 -2.2072 1.1341 6 1 0.6570 -2.3377 0.9033 7 6 2.0404 -2.9028 2.4306 8 8 2.8723 -2.4335 3.1779 9 7 1.4074 -4.0463 2.7595 10 6 1.8035 -4.7828 3.9623 11 6 0.9979 -4.2946 5.1385 12 1 0.2638 -3.5139 5.0035 13 6 1.1978 -4.8444 6.3870 14 7 0.4950 -4.4179 7.4136 15 14 2.4679 -6.1941 6.6207 16 1 3.7815 -5.5858 6.9515 17 1 2.0430 -7.0873 7.7283 18 1 2.5888 -6.9823 5.3679 19 6 0.3233 -4.5527 1.9142 20 6 -0.9919 -3.8814 2.3150 21 6 -2.0978 -4.7752 2.8799 22 6 -2.2295 -4.1919 1.4707 23 6 2.5651 -2.7951 0.0056 24 6 2.4537 -1.9342 -1.2199 25 8 2.7873 -2.4071 -2.2857 26 7 2.0077 -0.6777 -1.1988 27 1 -0.3633 0.5202 0.8863 28 1 -0.3633 0.5074 -0.8936 29 1 -0.3634 -1.0276 0.0075 30 1 1.5387 -0.3018 2.1340 31 1 3.1133 -0.5762 1.3439 32 1 2.8639 -4.6199 4.1555 33 1 1.6208 -5.8470 3.8134 34 1 0.6359 -4.8045 8.2920 35 1 0.5419 -4.3291 0.8701 36 1 0.2349 -5.6313 2.0440 37 1 -0.9007 -2.8748 2.7231 38 1 -1.8886 -5.8414 2.9657 39 1 -2.7345 -4.3563 3.6592 40 1 -2.9527 -3.3898 1.3237 41 1 -2.1067 -4.8741 0.6294 42 1 3.6069 -2.8401 0.3233 43 1 2.2147 -3.8010 -0.2257 44 1 2.0004 -0.1839 -2.0336 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332186839.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:37 Heat of formation + Delta-G solvation = -51.845913 kcal Electronic energy + Delta-G solvation = -25103.112945 eV Core-core repulsion = 21634.971388 eV Total energy + Delta-G solvation = -3468.141558 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.82103 -39.15978 -37.22720 -36.76068 -34.51361 -33.34084 -32.34806 -31.10105 -28.62486 -27.27669 -26.36567 -24.66645 -22.69989 -22.05546 -21.85734 -20.61261 -18.90458 -18.66607 -17.23778 -16.89443 -16.71718 -16.39343 -15.66914 -15.26983 -14.80136 -14.66565 -14.24113 -14.14387 -13.94578 -13.62347 -13.43324 -13.00011 -12.64718 -12.40557 -12.37286 -12.22169 -11.81484 -11.68008 -11.46756 -11.45063 -11.22866 -11.04106 -10.88380 -10.84782 -10.55658 -10.21034 -10.07419 -10.01632 -9.66125 -9.48158 -9.26940 -8.97718 -8.57920 -7.79870 -6.07721 -4.05136 2.54149 3.08211 3.20720 3.28071 3.33769 3.36195 3.63567 4.12480 4.39426 4.40428 4.51905 4.59086 4.74599 4.93663 4.99204 5.10211 5.16862 5.19034 5.21702 5.26723 5.37212 5.48652 5.56259 5.62673 5.67166 5.72388 5.80173 5.82125 5.86748 5.96428 6.01520 6.17050 6.27297 6.40376 6.54906 6.63473 6.67275 6.89030 7.19395 7.28269 7.60879 8.09721 8.16645 8.47112 8.86392 8.97892 9.52886 11.05661 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016945 B = 0.005084 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.980051 B = 5506.581870 C = 6078.488402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.136 3.864 3 H 0.089 0.911 4 C -0.113 4.113 5 C -0.116 4.116 6 H 0.102 0.898 7 C 0.515 3.485 8 O -0.532 6.532 9 N -0.588 5.588 10 C 0.216 3.784 11 C -0.518 4.518 12 H 0.076 0.924 13 C 0.072 3.928 14 N -0.898 5.898 15 Si 0.872 3.128 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.267 1.267 19 C 0.143 3.857 20 C -0.158 4.158 21 C -0.159 4.159 22 C -0.190 4.190 23 C -0.124 4.124 24 C 0.528 3.472 25 O -0.561 6.561 26 N -0.715 5.715 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.035 0.965 33 H 0.029 0.971 34 H 0.263 0.737 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.107 0.893 43 H 0.104 0.896 44 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.828 5.637 -15.799 17.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.031 3.969 3 H 0.107 0.893 4 C -0.151 4.151 5 C -0.137 4.137 6 H 0.120 0.880 7 C 0.301 3.699 8 O -0.409 6.409 9 N -0.318 5.318 10 C 0.095 3.905 11 C -0.556 4.556 12 H 0.095 0.905 13 C -0.130 4.130 14 N -0.537 5.537 15 Si 0.699 3.301 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.192 1.192 19 C 0.019 3.981 20 C -0.177 4.177 21 C -0.196 4.196 22 C -0.228 4.228 23 C -0.164 4.164 24 C 0.316 3.684 25 O -0.440 6.440 26 N -0.366 5.366 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.052 0.948 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.122 0.878 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.125 0.875 43 H 0.123 0.877 44 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -2.213 5.448 -15.501 16.579 hybrid contribution 0.348 -0.476 0.223 0.630 sum -1.866 4.973 -15.278 16.175 Atomic orbital electron populations 1.22350 0.94868 1.03144 1.02586 1.21041 0.94533 0.96567 0.84742 0.89290 1.21756 1.03296 0.93055 0.96964 1.21547 1.02000 0.96157 0.94045 0.87991 1.20073 0.82033 0.80990 0.86834 1.90690 1.34337 1.63757 1.52092 1.47903 1.33585 1.23913 1.26401 1.19707 0.96783 0.91073 0.82889 1.21265 1.21483 1.21738 0.91140 0.90544 1.24836 0.95701 0.96649 0.95811 1.69886 1.40912 1.42805 1.00102 0.86920 0.82550 0.82436 0.78171 1.20021 1.21169 1.19174 1.21086 0.85208 0.98657 0.93122 1.22723 0.90017 1.01043 1.03919 1.22883 1.01918 0.99435 0.95329 1.22993 1.00841 1.03872 0.95103 1.21599 1.03279 0.99761 0.91798 1.20048 0.75796 0.81941 0.90663 1.90752 1.50069 1.71814 1.31372 1.45593 1.65017 1.13799 1.12213 0.90926 0.92252 0.91710 0.88941 0.89870 0.94752 0.95337 0.92685 0.91300 0.90233 0.87776 0.88822 0.88941 0.89293 0.89185 0.87506 0.87723 0.76776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 9.30 37.16 0.35 -0.98 16 2 C 0.14 1.16 3.84 -68.37 -0.26 0.89 16 3 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.11 -1.30 4.17 -26.60 -0.11 -1.41 16 5 C -0.12 -1.52 1.68 -91.56 -0.15 -1.67 16 6 H 0.10 1.21 4.49 -51.93 -0.23 0.98 16 7 C 0.51 9.50 6.72 -10.99 -0.07 9.43 16 8 O -0.53 -12.12 15.90 5.56 0.09 -12.04 16 9 N -0.59 -11.17 2.47 -175.06 -0.43 -11.61 16 10 C 0.22 5.04 4.23 -5.20 -0.02 5.01 16 11 C -0.52 -14.21 9.94 -34.44 -0.34 -14.55 16 12 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 13 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 14 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 15 Si 0.87 21.19 27.47 -169.99 -4.67 16.52 16 16 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 19 C 0.14 2.13 5.35 -4.04 -0.02 2.11 16 20 C -0.16 -2.32 5.37 -90.62 -0.49 -2.80 16 21 C -0.16 -2.33 10.18 -26.69 -0.27 -2.60 16 22 C -0.19 -2.23 10.26 -26.69 -0.27 -2.50 16 23 C -0.12 -1.55 5.24 -28.10 -0.15 -1.70 16 24 C 0.53 6.72 7.71 -11.87 -0.09 6.63 16 25 O -0.56 -9.13 17.78 5.56 0.10 -9.03 16 26 N -0.71 -6.93 5.02 -54.85 -0.28 -7.21 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.57 6.50 -51.93 -0.34 0.23 16 30 H 0.09 1.13 8.11 -51.92 -0.42 0.71 16 31 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 32 H 0.03 0.86 6.93 -51.92 -0.36 0.50 16 33 H 0.03 0.64 6.92 -51.93 -0.36 0.28 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.07 0.83 5.58 -51.93 -0.29 0.54 16 36 H 0.08 1.16 7.57 -51.93 -0.39 0.76 16 37 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 38 H 0.09 1.36 8.03 -51.93 -0.42 0.95 16 39 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.11 1.39 8.09 -51.92 -0.42 0.96 16 43 H 0.10 1.23 7.11 -51.93 -0.37 0.86 16 44 H 0.40 3.30 8.80 -40.82 -0.36 2.94 16 LS Contribution 352.41 15.07 5.31 5.31 Total: -1.00 -34.17 352.41 -8.04 -42.21 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -6.93 Total: 4.36 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -2.01 Total: -2.20 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.07 Total: -45.13 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: 0.19 Total: -21.07 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.17 -8.04 -42.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332186839.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.633 kcal (2) G-P(sol) polarization free energy of solvation -34.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds