Wall clock time and date at job start Tue Mar 31 2020 06:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.30076 * 2 1 4 4 C 1.52916 * 109.30365 * 119.59120 * 2 1 3 5 5 C 1.53341 * 108.67846 * 69.34476 * 4 2 1 6 6 H 1.08993 * 109.67335 * 307.76914 * 5 4 2 7 7 C 1.50704 * 109.67627 * 187.26446 * 5 4 2 8 8 O 1.21278 * 119.99674 * 334.78357 * 7 5 4 9 9 N 1.34771 * 119.99946 * 154.77785 * 7 5 4 10 10 C 1.46499 * 120.00223 * 174.81030 * 9 7 5 11 11 C 1.50693 * 109.47463 * 89.99828 * 10 9 7 12 12 H 1.08003 * 120.00108 * 0.02562 * 11 10 9 13 13 C 1.37880 * 120.00264 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00141 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99865 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47037 * 89.99791 * 15 13 11 17 17 H 1.48497 * 109.47077 * 209.99774 * 15 13 11 18 18 H 1.48497 * 109.47015 * 329.99857 * 15 13 11 19 19 C 1.46503 * 119.99835 * 354.81094 * 9 7 5 20 20 C 1.53008 * 109.47144 * 275.00712 * 19 9 7 21 21 C 1.52998 * 117.49903 * 243.75272 * 20 19 9 22 22 C 1.52997 * 117.50006 * 175.08792 * 20 19 9 23 23 C 1.53069 * 108.42214 * 67.53366 * 5 4 2 24 24 C 1.50178 * 109.88915 * 311.08458 * 23 5 4 25 25 O 1.21278 * 118.24709 * 197.61982 * 24 23 5 26 26 N 1.33354 * 123.50628 * 17.61974 * 24 23 5 27 27 H 1.09005 * 109.46792 * 300.41163 * 1 2 3 28 28 H 1.08998 * 109.47202 * 60.41252 * 1 2 3 29 29 H 1.09002 * 109.47333 * 180.41719 * 1 2 3 30 30 H 1.09008 * 109.60023 * 309.58957 * 4 2 1 31 31 H 1.09002 * 109.60330 * 189.10944 * 4 2 1 32 32 H 1.09007 * 109.46776 * 329.99715 * 10 9 7 33 33 H 1.08999 * 109.47155 * 210.00368 * 10 9 7 34 34 H 0.96998 * 120.00287 * 180.02562 * 14 13 11 35 35 H 1.08995 * 109.47792 * 35.00916 * 19 9 7 36 36 H 1.09000 * 109.47384 * 155.01456 * 19 9 7 37 37 H 1.09003 * 115.54605 * 29.41809 * 20 19 9 38 38 H 1.08992 * 117.50452 * 359.97438 * 21 20 19 39 39 H 1.09003 * 117.49680 * 145.02789 * 21 20 19 40 40 H 1.09000 * 117.50012 * 214.97940 * 22 20 19 41 41 H 1.09002 * 117.49940 * 359.97438 * 22 20 19 42 42 H 1.09008 * 109.40296 * 71.23020 * 23 5 4 43 43 H 1.09005 * 109.40474 * 190.97076 * 23 5 4 44 44 H 0.96994 * 117.94551 * 177.75535 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8903 1.0287 0.0000 4 6 2.0355 -0.7127 1.2550 5 6 1.7142 -2.2072 1.1341 6 1 0.6570 -2.3377 0.9033 7 6 2.0404 -2.9028 2.4306 8 8 2.8723 -2.4335 3.1779 9 7 1.4074 -4.0463 2.7595 10 6 1.8035 -4.7828 3.9623 11 6 0.9979 -4.2946 5.1385 12 1 0.2638 -3.5139 5.0035 13 6 1.1978 -4.8444 6.3870 14 7 0.4950 -4.4179 7.4136 15 14 2.4679 -6.1941 6.6207 16 1 3.7815 -5.5858 6.9515 17 1 2.0430 -7.0873 7.7283 18 1 2.5888 -6.9823 5.3679 19 6 0.3233 -4.5527 1.9142 20 6 -0.9919 -3.8814 2.3150 21 6 -2.0978 -4.7752 2.8799 22 6 -2.2295 -4.1919 1.4707 23 6 2.5651 -2.7951 0.0056 24 6 2.4537 -1.9342 -1.2199 25 8 2.7873 -2.4071 -2.2857 26 7 2.0077 -0.6777 -1.1988 27 1 -0.3633 0.5202 0.8863 28 1 -0.3633 0.5074 -0.8936 29 1 -0.3634 -1.0276 0.0075 30 1 1.5387 -0.3018 2.1340 31 1 3.1133 -0.5762 1.3439 32 1 2.8639 -4.6199 4.1555 33 1 1.6208 -5.8470 3.8134 34 1 0.6359 -4.8045 8.2920 35 1 0.5419 -4.3291 0.8701 36 1 0.2349 -5.6313 2.0440 37 1 -0.9007 -2.8748 2.7231 38 1 -1.8886 -5.8414 2.9657 39 1 -2.7345 -4.3563 3.6592 40 1 -2.9527 -3.3898 1.3237 41 1 -2.1067 -4.8741 0.6294 42 1 3.6069 -2.8401 0.3233 43 1 2.2147 -3.8010 -0.2257 44 1 2.0004 -0.1839 -2.0336 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332186839.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:37 Heat of formation + Delta-G solvation = -75.448477 kcal Electronic energy + Delta-G solvation = -25104.136429 eV Core-core repulsion = 21634.971388 eV Total energy + Delta-G solvation = -3469.165042 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.91886 -40.48461 -38.41787 -37.82679 -36.09606 -34.74744 -34.09248 -31.96384 -30.44779 -28.15533 -27.69756 -26.05526 -23.87576 -23.26412 -23.11642 -21.85168 -20.05595 -19.82563 -19.01011 -18.26908 -18.01287 -17.44326 -17.07936 -16.40608 -16.26264 -15.86352 -15.73363 -15.20114 -15.02998 -14.84942 -14.59107 -14.50489 -14.20840 -13.69255 -13.61922 -13.43134 -13.14087 -12.99397 -12.73230 -12.59436 -12.48878 -12.35379 -12.26935 -11.97678 -11.88705 -11.81129 -11.65580 -11.24578 -11.18079 -10.81206 -10.71936 -10.43743 -10.11983 -9.42773 -8.27946 -6.30098 1.33438 1.36859 1.44223 1.53772 1.70899 2.21423 2.30024 2.33541 3.01305 3.06294 3.33956 3.60728 3.62613 3.69648 3.87420 4.04228 4.09001 4.14725 4.23277 4.25359 4.40589 4.46536 4.55720 4.63122 4.70178 4.76617 4.86142 4.89352 4.90529 4.94555 4.97029 5.06163 5.13651 5.14005 5.32861 5.35709 5.42062 5.50369 5.67007 5.85230 6.29252 6.29952 6.67670 6.71977 7.18037 7.26833 7.41236 8.88756 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016945 B = 0.005084 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.980051 B = 5506.581870 C = 6078.488402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.144 3.856 3 H 0.118 0.882 4 C -0.115 4.115 5 C -0.100 4.100 6 H 0.121 0.879 7 C 0.509 3.491 8 O -0.584 6.584 9 N -0.593 5.593 10 C 0.222 3.778 11 C -0.514 4.514 12 H 0.034 0.966 13 C 0.011 3.989 14 N -0.946 5.946 15 Si 0.938 3.062 16 H -0.279 1.279 17 H -0.280 1.280 18 H -0.239 1.239 19 C 0.140 3.860 20 C -0.175 4.175 21 C -0.186 4.186 22 C -0.144 4.144 23 C -0.121 4.121 24 C 0.533 3.467 25 O -0.598 6.598 26 N -0.700 5.700 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.018 0.982 33 H 0.047 0.953 34 H 0.265 0.735 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.105 0.895 41 H 0.117 0.883 42 H 0.099 0.901 43 H 0.116 0.884 44 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.166 5.302 -18.643 19.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.040 3.960 3 H 0.136 0.864 4 C -0.153 4.153 5 C -0.121 4.121 6 H 0.138 0.862 7 C 0.297 3.703 8 O -0.464 6.464 9 N -0.323 5.323 10 C 0.100 3.900 11 C -0.553 4.553 12 H 0.052 0.948 13 C -0.186 4.186 14 N -0.587 5.587 15 Si 0.762 3.238 16 H -0.205 1.205 17 H -0.205 1.205 18 H -0.162 1.162 19 C 0.018 3.982 20 C -0.194 4.194 21 C -0.223 4.223 22 C -0.181 4.181 23 C -0.161 4.161 24 C 0.320 3.680 25 O -0.480 6.480 26 N -0.351 5.351 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.036 0.964 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.123 0.877 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.123 0.877 41 H 0.136 0.864 42 H 0.117 0.883 43 H 0.134 0.866 44 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -2.596 5.136 -18.388 19.268 hybrid contribution 0.382 -0.260 1.159 1.248 sum -2.214 4.876 -17.229 18.042 Atomic orbital electron populations 1.22342 0.93697 1.02998 1.03755 1.21105 0.95271 0.97134 0.82480 0.86408 1.21770 1.02710 0.92303 0.98497 1.21472 1.03107 0.96475 0.91043 0.86156 1.21006 0.80780 0.80401 0.88078 1.90658 1.36567 1.65037 1.54167 1.47966 1.34740 1.24039 1.25512 1.19386 0.94980 0.92279 0.83347 1.21448 1.20604 1.20281 0.92951 0.94774 1.25745 0.97931 0.99462 0.95486 1.70042 1.43123 1.44823 1.00748 0.85855 0.79068 0.79538 0.79337 1.20450 1.20523 1.16234 1.21383 0.83802 0.98962 0.94099 1.22614 0.91023 0.99759 1.06036 1.22903 1.02502 0.99340 0.97550 1.23080 0.97963 1.03394 0.93688 1.21565 1.02716 1.00481 0.91318 1.19924 0.75651 0.82603 0.89819 1.90747 1.52067 1.72794 1.32386 1.45511 1.63544 1.12865 1.13149 0.90562 0.90358 0.92491 0.89943 0.91000 0.96430 0.93543 0.92624 0.87670 0.89559 0.90228 0.88901 0.90908 0.87692 0.86442 0.88266 0.86613 0.75441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 9.30 71.98 0.67 -1.40 16 2 C 0.14 2.04 3.84 45.10 0.17 2.21 16 3 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 4 C -0.11 -2.53 4.17 30.68 0.13 -2.41 16 5 C -0.10 -2.49 1.68 -11.40 -0.02 -2.51 16 6 H 0.12 2.58 4.49 -2.39 -0.01 2.57 16 7 C 0.51 18.91 6.72 87.66 0.59 19.50 16 8 O -0.58 -27.52 15.90 -3.02 -0.05 -27.57 16 9 N -0.59 -22.47 2.47 -826.15 -2.04 -24.51 16 10 C 0.22 10.42 4.23 85.63 0.36 10.79 16 11 C -0.51 -29.19 9.94 25.60 0.25 -28.93 16 12 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 13 C 0.01 0.65 5.47 84.66 0.46 1.11 16 14 N -0.95 -59.19 13.96 21.45 0.30 -58.89 16 15 Si 0.94 44.05 27.47 68.60 1.88 45.93 16 16 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 18 H -0.24 -10.06 6.54 99.48 0.65 -9.41 16 19 C 0.14 3.90 5.35 86.38 0.46 4.37 16 20 C -0.17 -4.98 5.37 -10.79 -0.06 -5.04 16 21 C -0.19 -5.39 10.18 30.62 0.31 -5.08 16 22 C -0.14 -2.93 10.26 30.62 0.31 -2.62 16 23 C -0.12 -2.79 5.24 29.71 0.16 -2.64 16 24 C 0.53 12.33 7.71 87.71 0.68 13.01 16 25 O -0.60 -18.31 17.78 -3.02 -0.05 -18.36 16 26 N -0.70 -11.49 5.02 -446.64 -2.24 -13.74 16 27 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.80 6.50 -2.39 -0.02 0.79 16 30 H 0.08 2.01 8.11 -2.38 -0.02 1.99 16 31 H 0.07 1.76 8.09 -2.39 -0.02 1.74 16 32 H 0.02 0.89 6.93 -2.38 -0.02 0.87 16 33 H 0.05 2.02 6.92 -2.39 -0.02 2.00 16 34 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 35 H 0.11 2.16 5.58 -2.39 -0.01 2.15 16 36 H 0.09 2.31 7.57 -2.39 -0.02 2.29 16 37 H 0.08 2.66 8.14 -2.39 -0.02 2.65 16 38 H 0.09 2.66 8.03 -2.39 -0.02 2.64 16 39 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.10 2.49 8.09 -2.38 -0.02 2.47 16 43 H 0.12 2.42 7.11 -2.38 -0.02 2.40 16 44 H 0.41 5.40 8.80 -92.71 -0.82 4.59 16 Total: -1.00 -78.44 352.41 2.42 -76.02 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.13 Total: 20.74 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 4.48 Total: 0.37 kcal Atomic # 7 Polarization: -93.15 SS G_CDS: -3.98 Total: -97.13 kcal Atomic # 8 Polarization: -45.83 SS G_CDS: -0.10 Total: -45.93 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.88 Total: 45.93 kcal Total: -78.44 2.42 -76.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332186839.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.574 kcal (2) G-P(sol) polarization free energy of solvation -78.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds