Wall clock time and date at job start Tue Mar 31 2020 06:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.29797 * 2 1 4 4 C 1.52921 * 109.30312 * 240.61985 * 2 1 3 5 5 C 1.53346 * 108.67305 * 290.44364 * 4 2 1 6 6 H 1.08998 * 109.70391 * 52.21995 * 5 4 2 7 7 C 1.50708 * 109.67218 * 172.73458 * 5 4 2 8 8 O 1.21281 * 120.00019 * 6.65342 * 7 5 4 9 9 N 1.34769 * 119.99624 * 186.65649 * 7 5 4 10 10 C 1.46502 * 120.00489 * 4.94858 * 9 7 5 11 11 C 1.50698 * 109.47049 * 95.59945 * 10 9 7 12 12 H 1.08001 * 119.99757 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99807 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99961 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99663 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47332 * 59.99910 * 15 13 11 17 17 H 1.48498 * 109.47178 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47335 * 299.99532 * 15 13 11 19 19 C 1.46507 * 119.99661 * 184.94989 * 9 7 5 20 20 C 1.53006 * 109.46925 * 84.87467 * 19 9 7 21 21 C 1.52992 * 117.49932 * 243.74442 * 20 19 9 22 22 C 1.53003 * 117.49534 * 175.08417 * 20 19 9 23 23 C 1.53063 * 108.42407 * 292.46466 * 5 4 2 24 24 C 1.50179 * 109.89267 * 48.90329 * 23 5 4 25 25 O 1.21278 * 118.25027 * 162.43851 * 24 23 5 26 26 N 1.33353 * 123.50476 * 342.41537 * 24 23 5 27 27 H 1.08999 * 109.47275 * 300.41786 * 1 2 3 28 28 H 1.09005 * 109.46808 * 60.41642 * 1 2 3 29 29 H 1.08998 * 109.47178 * 180.41280 * 1 2 3 30 30 H 1.09005 * 109.60038 * 50.19416 * 4 2 1 31 31 H 1.08998 * 109.60424 * 170.68526 * 4 2 1 32 32 H 1.09003 * 109.47061 * 215.60042 * 10 9 7 33 33 H 1.08995 * 109.46750 * 335.59870 * 10 9 7 34 34 H 0.96996 * 119.99585 * 179.97438 * 14 13 11 35 35 H 1.09003 * 109.47187 * 204.87378 * 19 9 7 36 36 H 1.08992 * 109.47340 * 324.87762 * 19 9 7 37 37 H 1.09000 * 115.55115 * 29.42139 * 20 19 9 38 38 H 1.09002 * 117.50143 * 0.02562 * 21 20 19 39 39 H 1.08999 * 117.49993 * 145.02411 * 21 20 19 40 40 H 1.08994 * 117.49978 * 214.97961 * 22 20 19 41 41 H 1.08997 * 117.49814 * 359.97438 * 22 20 19 42 42 H 1.09004 * 109.40315 * 288.77667 * 23 5 4 43 43 H 1.08996 * 109.40399 * 169.03485 * 23 5 4 44 44 H 0.97002 * 117.94631 * 182.19856 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8902 1.0287 0.0000 4 6 2.0355 -0.7081 -1.2576 5 6 1.7189 -2.2038 -1.1397 6 1 0.6626 -2.3387 -0.9073 7 6 2.0449 -2.8953 -2.4385 8 8 2.5986 -2.2848 -3.3282 9 7 1.7209 -4.1920 -2.6113 10 6 0.9564 -4.8997 -1.5812 11 6 -0.5082 -4.8725 -1.9351 12 1 -0.8367 -4.3772 -2.8369 13 6 -1.4288 -5.4790 -1.1070 14 7 -1.0288 -6.0816 -0.0087 15 14 -3.2443 -5.4446 -1.5454 16 1 -3.4494 -6.1090 -2.8575 17 1 -4.0193 -6.1620 -0.5014 18 1 -3.7075 -4.0361 -1.6260 19 6 2.1333 -4.8941 -3.8292 20 6 3.5588 -5.4223 -3.6555 21 6 4.6392 -4.8570 -4.5796 22 6 4.1331 -6.2879 -4.7789 23 6 2.5735 -2.7919 -0.0142 24 6 2.4620 -1.9343 1.2135 25 8 2.7998 -2.4083 2.2775 26 7 2.0118 -0.6792 1.1963 27 1 -0.3634 0.5203 0.8862 28 1 -0.3633 0.5074 -0.8938 29 1 -0.3633 -1.0276 0.0074 30 1 1.5359 -0.2966 -2.1347 31 1 3.1127 -0.5682 -1.3480 32 1 1.2968 -5.9335 -1.5220 33 1 1.1066 -4.4120 -0.6181 34 1 -1.6765 -6.5079 0.5740 35 1 1.4567 -5.7284 -4.0145 36 1 2.1014 -4.2059 -4.6738 37 1 3.8482 -5.6670 -2.6335 38 1 4.3346 -4.1084 -5.3110 39 1 5.6395 -4.7301 -4.1657 40 1 4.8008 -7.1017 -4.4960 41 1 3.4954 -6.4813 -5.6413 42 1 3.6148 -2.8330 -0.3338 43 1 2.2265 -3.7994 0.2152 44 1 2.0041 -0.1874 2.0324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332186847.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:42 Heat of formation + Delta-G solvation = -56.692790 kcal Electronic energy + Delta-G solvation = -25127.926002 eV Core-core repulsion = 21659.574268 eV Total energy + Delta-G solvation = -3468.351734 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.54624 -39.00695 -37.11385 -36.39966 -34.83454 -32.89773 -32.51848 -30.80695 -27.91265 -26.97942 -26.57552 -23.98461 -22.83251 -22.26572 -22.07958 -20.40245 -18.69409 -18.48367 -16.88626 -16.70040 -16.59728 -16.01467 -15.67484 -14.93044 -14.72436 -14.40620 -14.36847 -14.07870 -13.85468 -13.34294 -13.21066 -13.06108 -12.54485 -12.23979 -12.02178 -11.93387 -11.56820 -11.42094 -11.29361 -11.18904 -11.15623 -10.97664 -10.81739 -10.60971 -10.50984 -10.28772 -10.12337 -9.80829 -9.69455 -9.58643 -8.97599 -8.94206 -8.56714 -7.77283 -6.21260 -4.29402 2.89266 3.20901 3.25107 3.27302 3.31352 3.45314 3.75357 4.14065 4.29769 4.68135 4.83296 4.89285 5.02215 5.08600 5.11489 5.21217 5.25673 5.32591 5.42920 5.51131 5.60987 5.75739 5.80808 5.84007 5.88816 5.94249 6.04177 6.12062 6.12985 6.18134 6.22016 6.28501 6.35507 6.49994 6.58141 6.77585 6.94543 7.15718 7.47680 7.51961 7.72103 8.00960 8.29945 8.43573 8.73511 8.94403 9.38518 10.85090 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.008727 B = 0.007861 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3207.633989 B = 3561.142385 C = 5566.307286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.138 3.862 3 H 0.085 0.915 4 C -0.108 4.108 5 C -0.109 4.109 6 H 0.116 0.884 7 C 0.524 3.476 8 O -0.568 6.568 9 N -0.590 5.590 10 C 0.226 3.774 11 C -0.542 4.542 12 H 0.060 0.940 13 C 0.067 3.933 14 N -0.887 5.887 15 Si 0.895 3.105 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.276 1.276 19 C 0.151 3.849 20 C -0.160 4.160 21 C -0.173 4.173 22 C -0.181 4.181 23 C -0.131 4.131 24 C 0.530 3.470 25 O -0.559 6.559 26 N -0.717 5.717 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.035 0.965 33 H 0.050 0.950 34 H 0.267 0.733 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.123 0.877 44 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.743 8.158 -3.169 10.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.033 3.967 3 H 0.103 0.897 4 C -0.147 4.147 5 C -0.130 4.130 6 H 0.134 0.866 7 C 0.312 3.688 8 O -0.448 6.448 9 N -0.319 5.319 10 C 0.107 3.893 11 C -0.581 4.581 12 H 0.079 0.921 13 C -0.137 4.137 14 N -0.525 5.525 15 Si 0.723 3.277 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.201 1.201 19 C 0.027 3.973 20 C -0.179 4.179 21 C -0.210 4.210 22 C -0.219 4.219 23 C -0.171 4.171 24 C 0.317 3.683 25 O -0.438 6.438 26 N -0.369 5.369 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.121 0.879 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.115 0.885 43 H 0.141 0.859 44 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 6.124 7.949 -3.128 10.510 hybrid contribution -1.230 0.016 0.170 1.242 sum 4.894 7.965 -2.958 9.805 Atomic orbital electron populations 1.22364 0.94885 1.03731 1.02191 1.20987 0.94562 0.96165 0.85016 0.89742 1.21718 1.02426 0.93742 0.96771 1.21395 1.03303 0.94884 0.93457 0.86601 1.20186 0.78196 0.82043 0.88425 1.90588 1.44746 1.65451 1.44065 1.48163 1.52860 1.10148 1.20727 1.19716 0.90347 0.93001 0.86233 1.21425 0.91391 1.36555 1.08701 0.92137 1.24936 0.99185 0.94824 0.94773 1.69906 1.34978 1.35208 1.12376 0.86596 0.84540 0.78369 0.78213 1.20130 1.21122 1.20117 1.20830 0.92058 0.96461 0.87905 1.22790 0.95563 1.03471 0.96101 1.22949 0.98587 0.96186 1.03326 1.22914 1.03996 0.94084 1.00859 1.21843 1.02153 1.01259 0.91847 1.20102 0.75648 0.81625 0.90882 1.90738 1.50049 1.71420 1.31583 1.45575 1.65228 1.14066 1.12025 0.92419 0.91229 0.91099 0.89166 0.90657 0.94663 0.93251 0.92350 0.89792 0.91078 0.87938 0.88771 0.89585 0.89193 0.88938 0.88473 0.85939 0.77018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 9.29 37.16 0.35 -1.62 16 2 C 0.14 1.55 3.82 -68.37 -0.26 1.29 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.11 -1.46 4.09 -26.59 -0.11 -1.57 16 5 C -0.11 -1.81 1.68 -91.56 -0.15 -1.96 16 6 H 0.12 2.11 5.91 -51.93 -0.31 1.80 16 7 C 0.52 9.99 6.91 -10.98 -0.08 9.91 16 8 O -0.57 -11.59 15.62 5.56 0.09 -11.50 16 9 N -0.59 -11.65 2.47 -175.05 -0.43 -12.08 16 10 C 0.23 5.10 4.76 -5.19 -0.02 5.07 16 11 C -0.54 -13.55 9.38 -34.44 -0.32 -13.88 16 12 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 13 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 14 N -0.89 -24.01 13.29 55.43 0.74 -23.27 16 15 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 19 C 0.15 2.70 5.70 -4.03 -0.02 2.68 16 20 C -0.16 -2.52 5.97 -90.62 -0.54 -3.06 16 21 C -0.17 -2.44 10.18 -26.70 -0.27 -2.71 16 22 C -0.18 -2.36 10.26 -26.69 -0.27 -2.64 16 23 C -0.13 -2.20 4.99 -28.10 -0.14 -2.34 16 24 C 0.53 8.92 7.71 -11.87 -0.09 8.83 16 25 O -0.56 -11.45 17.78 5.56 0.10 -11.35 16 26 N -0.72 -9.40 5.03 -54.85 -0.28 -9.68 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.99 6.55 -51.93 -0.34 0.65 16 30 H 0.09 1.21 7.98 -51.93 -0.41 0.79 16 31 H 0.07 1.01 8.12 -51.93 -0.42 0.59 16 32 H 0.04 0.85 8.11 -51.93 -0.42 0.43 16 33 H 0.05 1.13 3.91 -51.93 -0.20 0.93 16 34 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 35 H 0.08 1.52 8.03 -51.93 -0.42 1.11 16 36 H 0.07 1.29 7.25 -51.93 -0.38 0.91 16 37 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 38 H 0.09 1.36 8.03 -51.93 -0.42 0.94 16 39 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.10 1.52 8.09 -51.93 -0.42 1.10 16 43 H 0.12 2.31 5.57 -51.93 -0.29 2.02 16 44 H 0.39 4.55 8.80 -40.82 -0.36 4.19 16 LS Contribution 354.73 15.07 5.35 5.35 Total: -1.00 -29.68 354.73 -8.39 -38.07 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -6.89 Total: 9.73 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -2.04 Total: -0.38 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: 0.03 Total: -45.04 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: 0.19 Total: -22.86 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.68 -8.39 -38.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332186847.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.618 kcal (2) G-P(sol) polarization free energy of solvation -29.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds