Wall clock time and date at job start Tue Mar 31 2020 06:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.29797 * 2 1 4 4 C 1.52921 * 109.30312 * 240.61985 * 2 1 3 5 5 C 1.53346 * 108.67305 * 290.44364 * 4 2 1 6 6 H 1.08998 * 109.70391 * 52.21995 * 5 4 2 7 7 C 1.50708 * 109.67218 * 172.73458 * 5 4 2 8 8 O 1.21281 * 120.00019 * 6.65342 * 7 5 4 9 9 N 1.34769 * 119.99624 * 186.65649 * 7 5 4 10 10 C 1.46502 * 120.00489 * 4.94858 * 9 7 5 11 11 C 1.50698 * 109.47049 * 95.59945 * 10 9 7 12 12 H 1.08001 * 119.99757 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99807 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99961 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99663 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47332 * 59.99910 * 15 13 11 17 17 H 1.48498 * 109.47178 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47335 * 299.99532 * 15 13 11 19 19 C 1.46507 * 119.99661 * 184.94989 * 9 7 5 20 20 C 1.53006 * 109.46925 * 84.87467 * 19 9 7 21 21 C 1.52992 * 117.49932 * 243.74442 * 20 19 9 22 22 C 1.53003 * 117.49534 * 175.08417 * 20 19 9 23 23 C 1.53063 * 108.42407 * 292.46466 * 5 4 2 24 24 C 1.50179 * 109.89267 * 48.90329 * 23 5 4 25 25 O 1.21278 * 118.25027 * 162.43851 * 24 23 5 26 26 N 1.33353 * 123.50476 * 342.41537 * 24 23 5 27 27 H 1.08999 * 109.47275 * 300.41786 * 1 2 3 28 28 H 1.09005 * 109.46808 * 60.41642 * 1 2 3 29 29 H 1.08998 * 109.47178 * 180.41280 * 1 2 3 30 30 H 1.09005 * 109.60038 * 50.19416 * 4 2 1 31 31 H 1.08998 * 109.60424 * 170.68526 * 4 2 1 32 32 H 1.09003 * 109.47061 * 215.60042 * 10 9 7 33 33 H 1.08995 * 109.46750 * 335.59870 * 10 9 7 34 34 H 0.96996 * 119.99585 * 179.97438 * 14 13 11 35 35 H 1.09003 * 109.47187 * 204.87378 * 19 9 7 36 36 H 1.08992 * 109.47340 * 324.87762 * 19 9 7 37 37 H 1.09000 * 115.55115 * 29.42139 * 20 19 9 38 38 H 1.09002 * 117.50143 * 0.02562 * 21 20 19 39 39 H 1.08999 * 117.49993 * 145.02411 * 21 20 19 40 40 H 1.08994 * 117.49978 * 214.97961 * 22 20 19 41 41 H 1.08997 * 117.49814 * 359.97438 * 22 20 19 42 42 H 1.09004 * 109.40315 * 288.77667 * 23 5 4 43 43 H 1.08996 * 109.40399 * 169.03485 * 23 5 4 44 44 H 0.97002 * 117.94631 * 182.19856 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8902 1.0287 0.0000 4 6 2.0355 -0.7081 -1.2576 5 6 1.7189 -2.2038 -1.1397 6 1 0.6626 -2.3387 -0.9073 7 6 2.0449 -2.8953 -2.4385 8 8 2.5986 -2.2848 -3.3282 9 7 1.7209 -4.1920 -2.6113 10 6 0.9564 -4.8997 -1.5812 11 6 -0.5082 -4.8725 -1.9351 12 1 -0.8367 -4.3772 -2.8369 13 6 -1.4288 -5.4790 -1.1070 14 7 -1.0288 -6.0816 -0.0087 15 14 -3.2443 -5.4446 -1.5454 16 1 -3.4494 -6.1090 -2.8575 17 1 -4.0193 -6.1620 -0.5014 18 1 -3.7075 -4.0361 -1.6260 19 6 2.1333 -4.8941 -3.8292 20 6 3.5588 -5.4223 -3.6555 21 6 4.6392 -4.8570 -4.5796 22 6 4.1331 -6.2879 -4.7789 23 6 2.5735 -2.7919 -0.0142 24 6 2.4620 -1.9343 1.2135 25 8 2.7998 -2.4083 2.2775 26 7 2.0118 -0.6792 1.1963 27 1 -0.3634 0.5203 0.8862 28 1 -0.3633 0.5074 -0.8938 29 1 -0.3633 -1.0276 0.0074 30 1 1.5359 -0.2966 -2.1347 31 1 3.1127 -0.5682 -1.3480 32 1 1.2968 -5.9335 -1.5220 33 1 1.1066 -4.4120 -0.6181 34 1 -1.6765 -6.5079 0.5740 35 1 1.4567 -5.7284 -4.0145 36 1 2.1014 -4.2059 -4.6738 37 1 3.8482 -5.6670 -2.6335 38 1 4.3346 -4.1084 -5.3110 39 1 5.6395 -4.7301 -4.1657 40 1 4.8008 -7.1017 -4.4960 41 1 3.4954 -6.4813 -5.6413 42 1 3.6148 -2.8330 -0.3338 43 1 2.2265 -3.7994 0.2152 44 1 2.0041 -0.1874 2.0324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332186847.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:42 Heat of formation + Delta-G solvation = -74.546652 kcal Electronic energy + Delta-G solvation = -25128.700204 eV Core-core repulsion = 21659.574268 eV Total energy + Delta-G solvation = -3469.125936 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.89725 -40.47680 -38.38773 -37.66893 -36.49588 -34.45015 -34.18134 -31.96517 -29.64554 -28.23732 -28.03315 -25.44297 -24.54180 -23.44658 -23.18080 -21.69909 -20.08170 -19.80879 -18.58635 -18.21039 -18.09290 -17.40081 -17.05639 -16.51386 -16.15833 -15.97359 -15.68208 -15.33094 -15.02057 -14.70029 -14.60630 -14.46462 -14.16273 -13.67894 -13.52398 -13.15731 -13.04985 -12.86020 -12.77883 -12.57661 -12.46530 -12.33872 -12.25063 -12.10935 -11.85882 -11.79764 -11.69672 -11.27327 -11.20646 -10.83369 -10.64016 -10.37893 -10.12441 -9.44099 -8.19971 -6.35012 1.41477 1.42361 1.50076 1.53384 1.73753 2.24437 2.29779 2.43311 2.95344 3.10083 3.42163 3.67431 3.69589 3.74662 3.88293 4.01759 4.10277 4.18337 4.21701 4.26732 4.41049 4.48252 4.59341 4.69178 4.75125 4.78076 4.84283 4.93194 4.96728 4.97919 5.02224 5.02502 5.16917 5.27500 5.28096 5.30845 5.43489 5.65794 5.84686 5.87078 6.05620 6.28291 6.59559 6.81490 7.17780 7.29595 7.41149 8.84791 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.008727 B = 0.007861 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3207.633989 B = 3561.142385 C = 5566.307286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.141 3.859 3 H 0.130 0.870 4 C -0.104 4.104 5 C -0.103 4.103 6 H 0.098 0.902 7 C 0.521 3.479 8 O -0.578 6.578 9 N -0.594 5.594 10 C 0.242 3.758 11 C -0.547 4.547 12 H 0.055 0.945 13 C 0.022 3.978 14 N -0.918 5.918 15 Si 0.953 3.047 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.269 1.269 19 C 0.151 3.849 20 C -0.184 4.184 21 C -0.167 4.167 22 C -0.159 4.159 23 C -0.125 4.125 24 C 0.529 3.471 25 O -0.602 6.602 26 N -0.700 5.700 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.037 0.963 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.014 0.986 33 H 0.046 0.954 34 H 0.267 0.733 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.746 9.877 -4.067 12.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.037 3.963 3 H 0.147 0.853 4 C -0.142 4.142 5 C -0.124 4.124 6 H 0.116 0.884 7 C 0.310 3.690 8 O -0.460 6.460 9 N -0.323 5.323 10 C 0.122 3.878 11 C -0.586 4.586 12 H 0.073 0.927 13 C -0.179 4.179 14 N -0.557 5.557 15 Si 0.778 3.222 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.194 1.194 19 C 0.028 3.972 20 C -0.203 4.203 21 C -0.204 4.204 22 C -0.196 4.196 23 C -0.165 4.165 24 C 0.317 3.683 25 O -0.485 6.485 26 N -0.351 5.351 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.056 0.944 30 H 0.114 0.886 31 H 0.098 0.902 32 H 0.032 0.968 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.126 0.874 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.113 0.887 44 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 6.120 9.713 -4.059 12.176 hybrid contribution -1.214 -0.503 0.384 1.368 sum 4.906 9.210 -3.676 11.063 Atomic orbital electron populations 1.22358 0.94703 1.02045 1.03920 1.21211 0.94576 0.97565 0.82909 0.85269 1.21743 1.02924 0.91216 0.98301 1.21350 1.02070 0.97097 0.91902 0.88377 1.20571 0.77682 0.81654 0.89115 1.90570 1.45272 1.65463 1.44698 1.48151 1.52806 1.10618 1.20745 1.19343 0.89603 0.91981 0.86897 1.21647 0.92647 1.36031 1.08268 0.92720 1.25644 1.03033 0.94532 0.94644 1.70015 1.36165 1.36200 1.13341 0.85677 0.79930 0.78600 0.77944 1.19682 1.20985 1.19357 1.20874 0.93371 0.95929 0.87029 1.22626 0.94786 1.06389 0.96515 1.22976 0.98283 0.96873 1.02236 1.23029 1.03175 0.94005 0.99394 1.21687 1.02551 1.00027 0.92200 1.20027 0.75681 0.82638 0.89966 1.90717 1.52378 1.72615 1.32742 1.45494 1.63367 1.12793 1.13465 0.90705 0.89571 0.94425 0.88594 0.90165 0.96840 0.93663 0.92421 0.90741 0.91296 0.89205 0.89138 0.88443 0.87437 0.87871 0.87597 0.88672 0.75607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.50 9.29 71.98 0.67 -2.83 16 2 C 0.14 2.76 3.82 45.11 0.17 2.93 16 3 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 4 C -0.10 -2.59 4.09 30.68 0.13 -2.47 16 5 C -0.10 -3.43 1.68 -11.40 -0.02 -3.44 16 6 H 0.10 3.66 5.91 -2.39 -0.01 3.65 16 7 C 0.52 20.02 6.91 87.66 0.61 20.63 16 8 O -0.58 -23.30 15.62 -3.03 -0.05 -23.35 16 9 N -0.59 -24.14 2.47 -826.14 -2.04 -26.18 16 10 C 0.24 11.37 4.76 85.63 0.41 11.78 16 11 C -0.55 -27.98 9.38 25.60 0.24 -27.74 16 12 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 13 C 0.02 1.15 5.46 84.66 0.46 1.62 16 14 N -0.92 -50.86 13.29 21.45 0.28 -50.58 16 15 Si 0.95 41.38 29.54 68.60 2.03 43.41 16 16 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 17 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 19 C 0.15 5.50 5.70 86.38 0.49 6.00 16 20 C -0.18 -5.79 5.97 -10.79 -0.06 -5.85 16 21 C -0.17 -4.46 10.18 30.62 0.31 -4.15 16 22 C -0.16 -3.88 10.26 30.62 0.31 -3.57 16 23 C -0.12 -4.27 4.99 29.71 0.15 -4.13 16 24 C 0.53 17.81 7.71 87.71 0.68 18.48 16 25 O -0.60 -25.07 17.78 -3.02 -0.05 -25.13 16 26 N -0.70 -17.13 5.03 -446.65 -2.25 -19.38 16 27 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.09 1.48 8.14 -2.38 -0.02 1.47 16 29 H 0.04 1.02 6.55 -2.39 -0.02 1.01 16 30 H 0.10 2.34 7.98 -2.38 -0.02 2.32 16 31 H 0.08 1.97 8.12 -2.39 -0.02 1.95 16 32 H 0.01 0.69 8.11 -2.39 -0.02 0.67 16 33 H 0.05 2.19 3.91 -2.39 -0.01 2.18 16 34 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 35 H 0.07 2.78 8.03 -2.39 -0.02 2.77 16 36 H 0.07 2.51 7.25 -2.39 -0.02 2.49 16 37 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 38 H 0.09 2.50 8.03 -2.39 -0.02 2.48 16 39 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.11 3.38 8.09 -2.38 -0.02 3.36 16 43 H 0.10 3.81 5.57 -2.39 -0.01 3.80 16 44 H 0.41 8.44 8.80 -92.71 -0.82 7.62 16 Total: -1.00 -64.85 354.73 2.66 -62.19 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: 0.19 Total: 31.75 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 4.54 Total: 7.26 kcal Atomic # 7 Polarization: -92.13 SS G_CDS: -4.00 Total: -96.13 kcal Atomic # 8 Polarization: -48.38 SS G_CDS: -0.10 Total: -48.48 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -64.85 2.66 -62.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332186847.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.355 kcal (2) G-P(sol) polarization free energy of solvation -64.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds