Wall clock time and date at job start Tue Mar 31 2020 06:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.23258 * 2 1 4 4 C 1.52883 * 109.26722 * 240.51166 * 2 1 3 5 5 C 1.53656 * 109.70214 * 302.04306 * 4 2 1 6 6 N 1.46511 * 107.36661 * 308.96272 * 5 4 2 7 7 C 1.33495 * 129.65595 * 233.70401 * 6 5 4 8 8 O 1.21537 * 123.98471 * 349.20507 * 7 6 5 9 9 N 1.34165 * 112.01147 * 169.37663 * 7 6 5 10 10 C 1.46497 * 124.17993 * 183.23804 * 9 7 6 11 11 C 1.53005 * 109.46717 * 269.69594 * 10 9 7 12 12 C 1.52996 * 109.47133 * 60.00159 * 11 10 9 13 13 C 1.53000 * 109.47220 * 300.00152 * 11 10 9 14 14 C 1.50703 * 109.47033 * 180.02562 * 11 10 9 15 15 H 1.08001 * 120.00013 * 354.25932 * 14 11 10 16 16 C 1.37874 * 119.99939 * 174.26065 * 14 11 10 17 17 N 1.31519 * 119.99899 * 209.32416 * 16 14 11 18 18 Si 1.86797 * 120.00273 * 29.31768 * 16 14 11 19 19 H 1.48503 * 109.47326 * 180.02562 * 18 16 14 20 20 H 1.48499 * 109.47173 * 300.00437 * 18 16 14 21 21 H 1.48503 * 109.47063 * 60.00583 * 18 16 14 22 22 C 1.35009 * 111.63790 * 2.96785 * 9 7 6 23 23 O 1.21240 * 127.17856 * 182.86532 * 22 9 7 24 24 C 1.47890 * 123.30286 * 50.16914 * 6 5 4 25 25 H 1.09003 * 112.46640 * 71.23819 * 24 6 5 26 26 C 1.53168 * 107.17003 * 308.39967 * 24 6 5 27 27 H 1.08996 * 109.47535 * 300.51529 * 1 2 3 28 28 H 1.08999 * 109.46914 * 60.51860 * 1 2 3 29 29 H 1.09001 * 109.46747 * 180.51708 * 1 2 3 30 30 H 1.08997 * 109.43394 * 62.12264 * 4 2 1 31 31 H 1.09009 * 109.43130 * 181.97811 * 4 2 1 32 32 H 1.09003 * 109.87031 * 68.42423 * 5 4 2 33 33 H 1.08996 * 109.87804 * 189.41467 * 5 4 2 34 34 H 1.08998 * 109.47030 * 149.70206 * 10 9 7 35 35 H 1.08991 * 109.47364 * 29.69558 * 10 9 7 36 36 H 1.08999 * 109.47453 * 175.21625 * 12 11 10 37 37 H 1.08997 * 109.47437 * 295.22193 * 12 11 10 38 38 H 1.09010 * 109.47030 * 55.21907 * 12 11 10 39 39 H 1.08999 * 109.47164 * 305.46542 * 13 11 10 40 40 H 1.08993 * 109.46949 * 65.46556 * 13 11 10 41 41 H 1.09008 * 109.46868 * 185.46641 * 13 11 10 42 42 H 0.97002 * 119.99843 * 354.98571 * 17 16 14 43 43 H 1.09001 * 109.59496 * 172.92579 * 26 24 6 44 44 H 1.08993 * 109.59944 * 293.24150 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8891 1.0292 0.0000 4 6 2.0345 -0.7104 -1.2562 5 6 1.4809 -2.1432 -1.2988 6 7 1.7718 -2.7630 -0.0034 7 6 2.3991 -3.9089 0.2710 8 8 2.6839 -4.7444 -0.5644 9 7 2.6745 -4.0308 1.5784 10 6 3.4168 -5.1509 2.1621 11 6 2.4384 -6.2558 2.5657 12 6 1.6759 -6.7381 1.3301 13 6 1.4475 -5.7088 3.5952 14 6 3.2018 -7.4078 3.1668 15 1 4.2818 -7.3978 3.1683 16 6 2.5216 -8.4745 3.7148 17 7 3.0578 -9.1597 4.7011 18 14 0.8382 -8.9464 3.0568 19 1 0.3227 -10.1176 3.8102 20 1 -0.0954 -7.8033 3.2202 21 1 0.9490 -9.2932 1.6170 22 6 2.1882 -2.9908 2.2887 23 8 2.3167 -2.7917 3.4777 24 6 1.4495 -2.1264 1.2920 25 1 0.3782 -2.1098 1.4928 26 6 2.0355 -0.7117 1.2588 27 1 -0.3634 0.5218 0.8853 28 1 -0.3633 0.5058 -0.8946 29 1 -0.3633 -1.0276 0.0093 30 1 1.7005 -0.1661 -2.1395 31 1 3.1240 -0.7429 -1.2417 32 1 0.4039 -2.1194 -1.4648 33 1 1.9665 -2.7045 -2.0970 34 1 3.9599 -4.8073 3.0424 35 1 4.1226 -5.5406 1.4288 36 1 1.0412 -7.5818 1.6011 37 1 1.0575 -5.9272 0.9453 38 1 2.3857 -7.0490 0.5634 39 1 1.9952 -5.2770 4.4329 40 1 0.8286 -4.9408 3.1313 41 1 0.8129 -6.5188 3.9547 42 1 3.9609 -8.9616 4.9944 43 1 1.7141 -0.1621 2.1436 44 1 3.1238 -0.7672 1.2381 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334973272.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:05 Heat of formation + Delta-G solvation = -56.234207 kcal Electronic energy + Delta-G solvation = -25899.281100 eV Core-core repulsion = 22430.949251 eV Total energy + Delta-G solvation = -3468.331848 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.68087 -39.76955 -39.51312 -37.93773 -36.63065 -34.65997 -33.57931 -32.42509 -28.85570 -28.19419 -28.13939 -26.54702 -26.41511 -24.54153 -23.33863 -22.01329 -20.77662 -19.81225 -18.98307 -18.35334 -18.15584 -17.37877 -16.87115 -16.47675 -16.20966 -15.98292 -15.47799 -15.34483 -15.00128 -14.94079 -14.81687 -14.51212 -14.40271 -14.16224 -14.03276 -13.64778 -13.07451 -12.90676 -12.77770 -12.72067 -12.32426 -12.29139 -12.01629 -11.96815 -11.82518 -11.77841 -11.68293 -11.38617 -11.16652 -11.11508 -10.99385 -10.45925 -10.23107 -9.86380 -8.82249 -6.34449 0.61032 1.12373 1.37104 1.44245 1.67599 1.94471 2.06565 2.39425 2.94609 2.98001 3.46456 3.76362 3.93842 3.96516 3.98703 4.04446 4.05548 4.26284 4.28694 4.42389 4.49892 4.55422 4.64585 4.69039 4.74331 4.76874 4.80652 4.82487 4.91320 4.92719 4.97931 5.05587 5.14463 5.21768 5.29732 5.34431 5.35010 5.53363 5.55627 5.67003 5.99093 6.06870 6.16885 6.38618 6.56835 7.08026 7.35784 8.56782 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.027983 B = 0.004956 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.361408 B = 5648.743990 C = 5916.606088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.082 4.082 3 H 0.099 0.901 4 C -0.128 4.128 5 C 0.141 3.859 6 N -0.611 5.611 7 C 0.697 3.303 8 O -0.574 6.574 9 N -0.579 5.579 10 C 0.151 3.849 11 C 0.028 3.972 12 C -0.127 4.127 13 C -0.124 4.124 14 C -0.609 4.609 15 H 0.027 0.973 16 C -0.001 4.001 17 N -0.919 5.919 18 Si 1.086 2.914 19 H -0.301 1.301 20 H -0.251 1.251 21 H -0.271 1.271 22 C 0.514 3.486 23 O -0.496 6.496 24 C 0.097 3.903 25 H 0.154 0.846 26 C -0.107 4.107 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.110 0.890 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.034 0.966 37 H 0.037 0.963 38 H 0.044 0.956 39 H 0.036 0.964 40 H 0.035 0.965 41 H 0.044 0.956 42 H 0.258 0.742 43 H 0.100 0.900 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.781 23.497 -13.140 28.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.101 4.101 3 H 0.117 0.883 4 C -0.166 4.166 5 C 0.022 3.978 6 N -0.350 5.350 7 C 0.400 3.600 8 O -0.451 6.451 9 N -0.323 5.323 10 C 0.030 3.970 11 C 0.026 3.974 12 C -0.184 4.184 13 C -0.181 4.181 14 C -0.646 4.646 15 H 0.046 0.954 16 C -0.203 4.203 17 N -0.553 5.553 18 Si 0.914 3.086 19 H -0.230 1.230 20 H -0.176 1.176 21 H -0.198 1.198 22 C 0.303 3.697 23 O -0.368 6.368 24 C -0.009 4.009 25 H 0.171 0.829 26 C -0.145 4.145 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.128 0.872 31 H 0.078 0.922 32 H 0.118 0.882 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.119 0.881 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.784 22.112 -12.823 27.028 hybrid contribution 2.154 0.155 0.305 2.180 sum -6.630 22.266 -12.519 26.391 Atomic orbital electron populations 1.21991 0.93814 1.02152 1.03271 1.21060 0.97013 0.99968 0.92050 0.88266 1.22089 1.00886 0.93818 0.99790 1.21916 1.02392 0.93412 0.80113 1.47772 1.59596 1.19422 1.08184 1.15785 0.79054 0.83312 0.81843 1.90938 1.59545 1.44844 1.49770 1.46801 1.52753 1.23490 1.09301 1.21513 0.93795 0.84350 0.97333 1.18725 0.93294 0.92932 0.92433 1.22116 0.99166 0.98883 0.98234 1.22026 0.98375 0.98935 0.98763 1.21742 0.92858 1.05899 1.44150 0.95444 1.26846 1.07997 0.93767 0.91651 1.70999 1.15813 1.47318 1.21186 0.83711 0.73285 0.76209 0.75433 1.22979 1.17643 1.19764 1.21475 0.78163 0.81577 0.88488 1.90767 1.57785 1.73749 1.14464 1.22564 1.02594 0.94930 0.80844 0.82862 1.21889 1.00482 0.90645 1.01533 0.91762 0.90757 0.92930 0.87170 0.92206 0.88199 0.89660 0.90676 0.90795 0.94723 0.94370 0.93700 0.94524 0.94653 0.93665 0.93276 0.88142 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 8.37 71.98 0.60 -0.47 16 2 C -0.08 -0.72 3.14 -10.77 -0.03 -0.75 16 3 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 4 C -0.13 -1.22 5.63 30.78 0.17 -1.05 16 5 C 0.14 2.11 6.39 86.60 0.55 2.66 16 6 N -0.61 -14.19 3.02 -816.66 -2.47 -16.66 16 7 C 0.70 23.67 6.94 179.64 1.25 24.92 16 8 O -0.57 -23.40 15.84 -3.83 -0.06 -23.46 16 9 N -0.58 -21.10 2.16 -773.66 -1.67 -22.76 16 10 C 0.15 6.62 4.68 86.38 0.40 7.03 16 11 C 0.03 1.37 0.57 -52.93 -0.03 1.34 16 12 C -0.13 -5.90 6.69 71.98 0.48 -5.42 16 13 C -0.12 -5.77 7.03 71.98 0.51 -5.26 16 14 C -0.61 -35.18 8.42 25.60 0.22 -34.97 16 15 H 0.03 1.71 7.99 -2.91 -0.02 1.69 16 16 C 0.00 -0.07 5.06 84.65 0.43 0.36 16 17 N -0.92 -57.99 13.70 21.45 0.29 -57.70 16 18 Si 1.09 53.15 23.53 68.60 1.61 54.76 16 19 H -0.30 -14.81 7.11 99.48 0.71 -14.11 16 20 H -0.25 -11.11 5.73 99.48 0.57 -10.54 16 21 H -0.27 -12.51 6.69 99.48 0.67 -11.85 16 22 C 0.51 16.40 5.98 87.78 0.53 16.92 16 23 O -0.50 -18.48 17.03 -2.91 -0.05 -18.53 16 24 C 0.10 2.03 3.15 44.20 0.14 2.17 16 25 H 0.15 2.52 7.02 -2.39 -0.02 2.50 16 26 C -0.11 -1.57 5.08 30.71 0.16 -1.42 16 27 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.05 0.45 5.14 -2.39 -0.01 0.44 16 30 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.10 1.07 6.95 -2.39 -0.02 1.06 16 33 H 0.08 1.47 8.00 -2.39 -0.02 1.45 16 34 H 0.07 3.37 7.99 -2.39 -0.02 3.35 16 35 H 0.07 3.33 7.90 -2.39 -0.02 3.32 16 36 H 0.03 1.62 2.26 -2.39 -0.01 1.61 16 37 H 0.04 1.61 6.56 -2.39 -0.02 1.59 16 38 H 0.04 2.15 7.83 -2.38 -0.02 2.14 16 39 H 0.04 1.77 8.03 -2.39 -0.02 1.75 16 40 H 0.03 1.45 6.70 -2.39 -0.02 1.43 16 41 H 0.04 2.17 4.40 -2.38 -0.01 2.16 16 42 H 0.26 16.37 8.73 -92.71 -0.81 15.56 16 43 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.06 1.08 8.08 -2.39 -0.02 1.06 16 Total: -1.00 -73.76 324.38 3.82 -69.94 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 0.79 Total: 8.35 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 5.37 Total: 6.05 kcal Atomic # 7 Polarization: -93.28 SS G_CDS: -3.84 Total: -97.12 kcal Atomic # 8 Polarization: -41.87 SS G_CDS: -0.11 Total: -41.98 kcal Atomic # 14 Polarization: 53.15 SS G_CDS: 1.61 Total: 54.76 kcal Total: -73.76 3.82 -69.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334973272.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.708 kcal (2) G-P(sol) polarization free energy of solvation -73.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds