Wall clock time and date at job start Tue Mar 31 2020 06:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.26483 * 2 1 4 4 C 1.52888 * 109.26563 * 119.46159 * 2 1 3 5 5 C 1.52203 * 109.96644 * 58.42877 * 4 2 1 6 6 N 1.46515 * 108.12526 * 50.20845 * 5 4 2 7 7 C 1.33520 * 129.70161 * 127.75814 * 6 5 4 8 8 O 1.21531 * 124.00603 * 10.80840 * 7 6 5 9 9 N 1.34171 * 111.99221 * 190.78864 * 7 6 5 10 10 C 1.46496 * 124.17908 * 176.53689 * 9 7 6 11 11 C 1.52992 * 109.47337 * 90.02006 * 10 9 7 12 12 C 1.52997 * 109.47482 * 300.00145 * 11 10 9 13 13 C 1.52999 * 109.46961 * 60.00506 * 11 10 9 14 14 C 1.50706 * 109.47161 * 179.97438 * 11 10 9 15 15 H 1.07998 * 119.99629 * 0.02562 * 14 11 10 16 16 C 1.37875 * 119.99955 * 179.97438 * 14 11 10 17 17 N 1.31510 * 120.00308 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99908 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47233 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46997 * 120.00173 * 18 16 14 21 21 H 1.48501 * 109.47364 * 240.00497 * 18 16 14 22 22 C 1.35000 * 111.64014 * 356.80135 * 9 7 6 23 23 O 1.21241 * 127.18167 * 177.13498 * 22 9 7 24 24 C 1.47895 * 123.29610 * 310.98029 * 6 5 4 25 25 H 1.09004 * 111.64926 * 288.36446 * 24 6 5 26 26 C 1.53169 * 107.16243 * 50.69235 * 24 6 5 27 27 H 1.08999 * 109.46994 * 179.50481 * 1 2 3 28 28 H 1.08996 * 109.47435 * 299.50486 * 1 2 3 29 29 H 1.08997 * 109.47330 * 59.50739 * 1 2 3 30 30 H 1.08998 * 109.43620 * 178.03308 * 4 2 1 31 31 H 1.09007 * 109.43213 * 297.93789 * 4 2 1 32 32 H 1.09000 * 108.52219 * 291.06515 * 5 4 2 33 33 H 1.09002 * 110.47783 * 170.48073 * 5 4 2 34 34 H 1.09001 * 109.47062 * 330.01980 * 10 9 7 35 35 H 1.08996 * 109.46956 * 210.02801 * 10 9 7 36 36 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 37 37 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 38 38 H 1.09004 * 109.47261 * 179.97438 * 12 11 10 39 39 H 1.09002 * 109.46716 * 299.99630 * 13 11 10 40 40 H 1.09000 * 109.47486 * 59.99547 * 13 11 10 41 41 H 1.09001 * 109.47362 * 180.02562 * 13 11 10 42 42 H 0.96998 * 120.00365 * 179.97438 * 17 16 14 43 43 H 1.08999 * 109.59615 * 66.60154 * 26 24 6 44 44 H 1.09005 * 109.59784 * 186.91046 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8896 1.0289 0.0000 4 6 2.0344 -0.7099 1.2566 5 6 1.4989 -2.1339 1.2995 6 7 1.7722 -2.7629 0.0048 7 6 2.3770 -3.9211 -0.2701 8 8 2.6504 -4.7602 0.5655 9 7 2.6466 -4.0491 -1.5781 10 6 3.3700 -5.1812 -2.1624 11 6 2.3745 -6.2747 -2.5549 12 6 1.6140 -6.7420 -1.3123 13 6 1.3842 -5.7186 -3.5800 14 6 3.1186 -7.4390 -3.1565 15 1 4.1940 -7.4027 -3.2491 16 6 2.4266 -8.5508 -3.5876 17 7 1.1171 -8.5952 -3.4743 18 14 3.3490 -9.9943 -4.3326 19 1 4.8041 -9.6980 -4.3463 20 1 3.1001 -11.2128 -3.5210 21 1 2.8762 -10.2199 -5.7221 22 6 2.1740 -3.0030 -2.2886 23 8 2.3020 -2.8076 -3.4783 24 6 1.4496 -2.1271 -1.2910 25 1 0.3752 -2.1099 -1.4740 26 6 2.0355 -0.7122 -1.2585 27 1 -0.3633 -1.0276 -0.0089 28 1 -0.3634 0.5061 0.8943 29 1 -0.3634 0.5214 -0.8855 30 1 3.1238 -0.7423 1.2423 31 1 1.6994 -0.1657 2.1397 32 1 0.4234 -2.0943 1.4726 33 1 1.9828 -2.6995 2.0958 34 1 4.0756 -5.5774 -1.4321 35 1 3.9119 -4.8483 -3.0475 36 1 1.0757 -5.8997 -0.8776 37 1 2.3196 -7.1382 -0.5821 38 1 0.9044 -7.5208 -1.5921 39 1 0.8459 -4.8763 -3.1453 40 1 1.9260 -5.3857 -4.4652 41 1 0.6746 -6.4975 -3.8593 42 1 0.6302 -9.3772 -3.7779 43 1 3.1238 -0.7676 -1.2350 44 1 1.7163 -0.1639 -2.1448 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334973274.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:11 Heat of formation + Delta-G solvation = -45.663504 kcal Electronic energy + Delta-G solvation = -25782.505444 eV Core-core repulsion = 22314.631975 eV Total energy + Delta-G solvation = -3467.873468 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.28762 -38.54844 -38.09805 -35.93870 -35.14216 -33.19628 -31.85049 -30.68812 -28.03237 -26.30992 -25.66113 -25.34373 -25.09315 -23.40661 -22.01737 -20.51795 -19.06528 -18.59060 -17.05432 -16.69779 -16.11705 -15.71496 -15.64776 -15.10169 -14.83432 -14.55677 -14.38884 -14.13274 -13.76004 -13.57913 -13.25545 -12.88258 -12.62984 -12.36187 -12.09035 -12.04964 -11.57893 -11.30570 -11.16369 -11.14167 -11.07718 -10.81221 -10.67898 -10.63575 -10.37835 -10.23996 -10.13917 -9.98984 -9.61293 -9.40453 -8.84748 -8.71852 -8.54309 -8.29797 -5.93571 -4.04735 2.05144 2.47961 3.30051 3.32002 3.40085 3.44166 3.50719 4.18973 4.35329 4.45209 4.49773 4.68445 4.78283 4.88333 5.02239 5.19556 5.29008 5.32600 5.40930 5.50116 5.57592 5.59334 5.69393 5.78716 5.90460 5.91250 6.06461 6.16945 6.23079 6.33792 6.49890 6.75211 6.89456 7.03733 7.13781 7.20551 7.52511 7.62155 7.72355 7.77298 7.83642 8.15004 8.21497 8.45990 8.57605 8.95080 9.60183 11.07547 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031968 B = 0.004477 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.656931 B = 6252.394317 C = 6564.533664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.089 4.089 3 H 0.079 0.921 4 C -0.135 4.135 5 C 0.152 3.848 6 N -0.628 5.628 7 C 0.706 3.294 8 O -0.536 6.536 9 N -0.565 5.565 10 C 0.129 3.871 11 C 0.054 3.946 12 C -0.119 4.119 13 C -0.123 4.123 14 C -0.505 4.505 15 H 0.057 0.943 16 C 0.067 3.933 17 N -0.884 5.884 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C 0.525 3.475 23 O -0.470 6.470 24 C 0.086 3.914 25 H 0.125 0.875 26 C -0.109 4.109 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.001 0.999 37 H 0.030 0.970 38 H 0.079 0.921 39 H -0.002 1.002 40 H 0.029 0.971 41 H 0.083 0.917 42 H 0.259 0.741 43 H 0.073 0.927 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.449 18.365 8.254 20.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.107 4.107 3 H 0.097 0.903 4 C -0.173 4.173 5 C 0.031 3.969 6 N -0.369 5.369 7 C 0.409 3.591 8 O -0.409 6.409 9 N -0.309 5.309 10 C 0.009 3.991 11 C 0.053 3.947 12 C -0.177 4.177 13 C -0.180 4.180 14 C -0.544 4.544 15 H 0.076 0.924 16 C -0.135 4.135 17 N -0.522 5.522 18 Si 0.722 3.278 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C 0.311 3.689 23 O -0.340 6.340 24 C -0.021 4.021 25 H 0.142 0.858 26 C -0.148 4.148 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.020 0.980 37 H 0.049 0.951 38 H 0.097 0.903 39 H 0.017 0.983 40 H 0.048 0.952 41 H 0.101 0.899 42 H 0.069 0.931 43 H 0.092 0.908 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.350 17.806 8.131 19.621 hybrid contribution 0.350 -0.845 -0.446 1.018 sum -1.000 16.961 7.684 18.648 Atomic orbital electron populations 1.21991 0.94830 1.02421 1.02115 1.21045 0.96325 0.99460 0.93894 0.90263 1.21844 1.01654 0.95484 0.98363 1.21158 1.00932 0.92370 0.82484 1.47572 1.62737 1.20195 1.06355 1.15608 0.78497 0.82210 0.82795 1.90961 1.57490 1.43240 1.49188 1.46738 1.53112 1.22897 1.08121 1.22209 0.95319 0.84127 0.97410 1.18481 0.91993 0.91062 0.93211 1.21728 1.00175 0.99430 0.96331 1.21771 1.00095 0.98111 0.98044 1.20964 0.93227 1.00057 1.40120 0.92443 1.24876 0.94842 0.98194 0.95546 1.69843 1.06064 1.29174 1.47127 0.86515 0.80075 0.82485 0.78771 1.19784 1.21082 1.21091 1.20558 0.78355 0.81851 0.88113 1.90768 1.56357 1.73931 1.12951 1.22383 1.01853 0.94494 0.83390 0.85803 1.21784 1.01199 0.92571 0.99206 0.92112 0.92327 0.92247 0.91294 0.90040 0.91031 0.88764 0.90145 0.90202 0.97962 0.95069 0.90255 0.98339 0.95193 0.89882 0.93121 0.90844 0.89484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 8.35 37.16 0.31 -0.73 16 2 C -0.09 -0.64 3.14 -90.59 -0.28 -0.93 16 3 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.14 -1.00 5.57 -27.20 -0.15 -1.16 16 5 C 0.15 1.52 6.35 -4.44 -0.03 1.50 16 6 N -0.63 -8.73 3.05 -172.72 -0.53 -9.26 16 7 C 0.71 13.16 6.87 -88.58 -0.61 12.55 16 8 O -0.54 -11.64 15.90 5.34 0.08 -11.56 16 9 N -0.56 -10.99 2.13 -120.99 -0.26 -11.24 16 10 C 0.13 2.83 4.68 -4.05 -0.02 2.81 16 11 C 0.05 1.35 0.57 -155.66 -0.09 1.26 16 12 C -0.12 -3.07 7.07 37.16 0.26 -2.80 16 13 C -0.12 -3.09 7.35 37.16 0.27 -2.82 16 14 C -0.50 -13.76 8.01 -34.44 -0.28 -14.04 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.07 1.83 5.15 -17.82 -0.09 1.74 16 17 N -0.88 -24.86 9.35 55.43 0.52 -24.34 16 18 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C 0.52 9.22 5.95 -10.62 -0.06 9.16 16 23 O -0.47 -9.31 17.07 5.59 0.10 -9.22 16 24 C 0.09 1.11 3.15 -67.97 -0.21 0.90 16 25 H 0.12 1.44 6.96 -51.93 -0.36 1.08 16 26 C -0.11 -1.06 5.11 -26.55 -0.14 -1.19 16 27 H 0.06 0.47 5.15 -51.93 -0.27 0.20 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 32 H 0.07 0.62 6.90 -51.93 -0.36 0.26 16 33 H 0.09 1.00 8.00 -51.93 -0.42 0.59 16 34 H 0.08 1.78 7.91 -51.93 -0.41 1.37 16 35 H 0.08 1.73 7.98 -51.93 -0.41 1.31 16 36 H 0.00 0.03 6.12 -51.93 -0.32 -0.28 16 37 H 0.03 0.81 8.06 -51.93 -0.42 0.39 16 38 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 39 H 0.00 -0.06 6.26 -51.93 -0.32 -0.38 16 40 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 2.28 6.07 -51.93 -0.32 1.97 16 42 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 44 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 332.31 15.07 5.01 5.01 Total: -1.00 -31.56 332.31 -8.05 -39.61 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -6.84 Total: -1.57 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -1.11 Total: 6.25 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: -0.27 Total: -44.84 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: 0.18 Total: -20.78 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.56 -8.05 -39.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334973274.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.050 kcal (2) G-P(sol) polarization free energy of solvation -31.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds