Wall clock time and date at job start Tue Mar 31 2020 06:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.26483 * 2 1 4 4 C 1.52888 * 109.26563 * 119.46159 * 2 1 3 5 5 C 1.52203 * 109.96644 * 58.42877 * 4 2 1 6 6 N 1.46515 * 108.12526 * 50.20845 * 5 4 2 7 7 C 1.33520 * 129.70161 * 127.75814 * 6 5 4 8 8 O 1.21531 * 124.00603 * 10.80840 * 7 6 5 9 9 N 1.34171 * 111.99221 * 190.78864 * 7 6 5 10 10 C 1.46496 * 124.17908 * 176.53689 * 9 7 6 11 11 C 1.52992 * 109.47337 * 90.02006 * 10 9 7 12 12 C 1.52997 * 109.47482 * 300.00145 * 11 10 9 13 13 C 1.52999 * 109.46961 * 60.00506 * 11 10 9 14 14 C 1.50706 * 109.47161 * 179.97438 * 11 10 9 15 15 H 1.07998 * 119.99629 * 0.02562 * 14 11 10 16 16 C 1.37875 * 119.99955 * 179.97438 * 14 11 10 17 17 N 1.31510 * 120.00308 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99908 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47233 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46997 * 120.00173 * 18 16 14 21 21 H 1.48501 * 109.47364 * 240.00497 * 18 16 14 22 22 C 1.35000 * 111.64014 * 356.80135 * 9 7 6 23 23 O 1.21241 * 127.18167 * 177.13498 * 22 9 7 24 24 C 1.47895 * 123.29610 * 310.98029 * 6 5 4 25 25 H 1.09004 * 111.64926 * 288.36446 * 24 6 5 26 26 C 1.53169 * 107.16243 * 50.69235 * 24 6 5 27 27 H 1.08999 * 109.46994 * 179.50481 * 1 2 3 28 28 H 1.08996 * 109.47435 * 299.50486 * 1 2 3 29 29 H 1.08997 * 109.47330 * 59.50739 * 1 2 3 30 30 H 1.08998 * 109.43620 * 178.03308 * 4 2 1 31 31 H 1.09007 * 109.43213 * 297.93789 * 4 2 1 32 32 H 1.09000 * 108.52219 * 291.06515 * 5 4 2 33 33 H 1.09002 * 110.47783 * 170.48073 * 5 4 2 34 34 H 1.09001 * 109.47062 * 330.01980 * 10 9 7 35 35 H 1.08996 * 109.46956 * 210.02801 * 10 9 7 36 36 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 37 37 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 38 38 H 1.09004 * 109.47261 * 179.97438 * 12 11 10 39 39 H 1.09002 * 109.46716 * 299.99630 * 13 11 10 40 40 H 1.09000 * 109.47486 * 59.99547 * 13 11 10 41 41 H 1.09001 * 109.47362 * 180.02562 * 13 11 10 42 42 H 0.96998 * 120.00365 * 179.97438 * 17 16 14 43 43 H 1.08999 * 109.59615 * 66.60154 * 26 24 6 44 44 H 1.09005 * 109.59784 * 186.91046 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8896 1.0289 0.0000 4 6 2.0344 -0.7099 1.2566 5 6 1.4989 -2.1339 1.2995 6 7 1.7722 -2.7629 0.0048 7 6 2.3770 -3.9211 -0.2701 8 8 2.6504 -4.7602 0.5655 9 7 2.6466 -4.0491 -1.5781 10 6 3.3700 -5.1812 -2.1624 11 6 2.3745 -6.2747 -2.5549 12 6 1.6140 -6.7420 -1.3123 13 6 1.3842 -5.7186 -3.5800 14 6 3.1186 -7.4390 -3.1565 15 1 4.1940 -7.4027 -3.2491 16 6 2.4266 -8.5508 -3.5876 17 7 1.1171 -8.5952 -3.4743 18 14 3.3490 -9.9943 -4.3326 19 1 4.8041 -9.6980 -4.3463 20 1 3.1001 -11.2128 -3.5210 21 1 2.8762 -10.2199 -5.7221 22 6 2.1740 -3.0030 -2.2886 23 8 2.3020 -2.8076 -3.4783 24 6 1.4496 -2.1271 -1.2910 25 1 0.3752 -2.1099 -1.4740 26 6 2.0355 -0.7122 -1.2585 27 1 -0.3633 -1.0276 -0.0089 28 1 -0.3634 0.5061 0.8943 29 1 -0.3634 0.5214 -0.8855 30 1 3.1238 -0.7423 1.2423 31 1 1.6994 -0.1657 2.1397 32 1 0.4234 -2.0943 1.4726 33 1 1.9828 -2.6995 2.0958 34 1 4.0756 -5.5774 -1.4321 35 1 3.9119 -4.8483 -3.0475 36 1 1.0757 -5.8997 -0.8776 37 1 2.3196 -7.1382 -0.5821 38 1 0.9044 -7.5208 -1.5921 39 1 0.8459 -4.8763 -3.1453 40 1 1.9260 -5.3857 -4.4652 41 1 0.6746 -6.4975 -3.8593 42 1 0.6302 -9.3772 -3.7779 43 1 3.1238 -0.7676 -1.2350 44 1 1.7163 -0.1639 -2.1448 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334973274.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:10 Heat of formation + Delta-G solvation = -64.275971 kcal Electronic energy + Delta-G solvation = -25783.312541 eV Core-core repulsion = 22314.631975 eV Total energy + Delta-G solvation = -3468.680565 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.62135 -39.71962 -39.45797 -37.73200 -36.57397 -34.56704 -33.17695 -32.23018 -28.80307 -27.94311 -27.70591 -27.14296 -26.37791 -24.45716 -23.29149 -21.90966 -20.52378 -19.77680 -18.47887 -18.10565 -17.86029 -17.30745 -16.81963 -16.52248 -16.09762 -15.94764 -15.45441 -15.31200 -14.94739 -14.83113 -14.53941 -14.42597 -14.29884 -14.01384 -13.25685 -13.12192 -13.06316 -12.75385 -12.64597 -12.62051 -12.30500 -12.29414 -12.21101 -12.01935 -11.89947 -11.80635 -11.67333 -11.47919 -11.36465 -11.00714 -10.77085 -10.45040 -10.41367 -9.82706 -8.03698 -6.21828 0.66132 1.18632 1.41786 1.44254 1.54877 1.99539 2.12999 2.44774 3.01436 3.19482 3.49571 3.78020 3.97749 3.99362 4.04719 4.09591 4.32491 4.39412 4.52376 4.53474 4.57321 4.60460 4.78143 4.81772 4.89202 4.91725 4.94665 4.98836 5.01800 5.09350 5.12868 5.22919 5.30615 5.35885 5.42028 5.54434 5.56109 5.60596 5.62193 6.01054 6.09611 6.23159 6.34862 6.44986 6.82796 7.13801 7.45880 8.96235 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031968 B = 0.004477 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.656931 B = 6252.394317 C = 6564.533664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.082 4.082 3 H 0.103 0.897 4 C -0.128 4.128 5 C 0.141 3.859 6 N -0.614 5.614 7 C 0.698 3.302 8 O -0.576 6.576 9 N -0.576 5.576 10 C 0.139 3.861 11 C 0.047 3.953 12 C -0.097 4.097 13 C -0.104 4.104 14 C -0.526 4.526 15 H 0.056 0.944 16 C 0.023 3.977 17 N -0.905 5.905 18 Si 0.955 3.045 19 H -0.268 1.268 20 H -0.283 1.283 21 H -0.281 1.281 22 C 0.516 3.484 23 O -0.497 6.497 24 C 0.096 3.904 25 H 0.146 0.854 26 C -0.105 4.105 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.112 0.888 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.008 0.992 37 H 0.015 0.985 38 H 0.055 0.945 39 H 0.009 0.991 40 H 0.021 0.979 41 H 0.059 0.941 42 H 0.260 0.740 43 H 0.064 0.936 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.891 20.674 8.964 22.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.100 4.100 3 H 0.121 0.879 4 C -0.166 4.166 5 C 0.021 3.979 6 N -0.353 5.353 7 C 0.400 3.600 8 O -0.453 6.453 9 N -0.320 5.320 10 C 0.018 3.982 11 C 0.046 3.954 12 C -0.155 4.155 13 C -0.162 4.162 14 C -0.564 4.564 15 H 0.074 0.926 16 C -0.177 4.177 17 N -0.544 5.544 18 Si 0.781 3.219 19 H -0.192 1.192 20 H -0.209 1.209 21 H -0.207 1.207 22 C 0.305 3.695 23 O -0.369 6.369 24 C -0.011 4.011 25 H 0.163 0.837 26 C -0.143 4.143 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.130 0.870 32 H 0.111 0.889 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.027 0.973 37 H 0.035 0.965 38 H 0.074 0.926 39 H 0.028 0.972 40 H 0.040 0.960 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.815 20.180 8.860 22.114 hybrid contribution 0.456 -1.516 -0.644 1.709 sum -1.359 18.665 8.215 20.438 Atomic orbital electron populations 1.21992 0.94048 1.01950 1.03305 1.21060 0.96836 1.00100 0.92035 0.87929 1.21843 1.01166 0.93657 0.99914 1.21581 1.02432 0.93589 0.80254 1.47783 1.60794 1.18527 1.08170 1.15799 0.78915 0.83237 0.82019 1.90926 1.59491 1.44929 1.49939 1.46752 1.53392 1.22782 1.09043 1.21775 0.94582 0.84450 0.97351 1.18493 0.92468 0.91774 0.92686 1.21478 0.99169 0.98677 0.96197 1.21537 0.99410 0.97482 0.97728 1.21269 0.93401 1.01157 1.40605 0.92624 1.25598 0.95624 1.00546 0.95918 1.69966 1.07169 1.29770 1.47516 0.85556 0.79105 0.79312 0.77945 1.19214 1.20857 1.20664 1.21367 0.77911 0.81805 0.88448 1.90746 1.57348 1.74504 1.14301 1.22562 1.02405 0.95164 0.80971 0.83669 1.21872 1.00619 0.90358 1.01489 0.93318 0.90675 0.91706 0.92030 0.86957 0.88907 0.89628 0.90850 0.90230 0.97342 0.96545 0.92603 0.97246 0.96018 0.92259 0.93076 0.91699 0.88110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 8.35 71.98 0.60 -0.80 16 2 C -0.08 -0.84 3.14 -10.77 -0.03 -0.88 16 3 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 4 C -0.13 -1.43 5.57 30.29 0.17 -1.26 16 5 C 0.14 2.49 6.35 86.11 0.55 3.03 16 6 N -0.61 -16.19 3.05 -819.34 -2.50 -18.69 16 7 C 0.70 26.04 6.87 179.63 1.23 27.27 16 8 O -0.58 -25.57 15.90 -3.81 -0.06 -25.63 16 9 N -0.58 -22.61 2.13 -773.61 -1.65 -24.26 16 10 C 0.14 6.29 4.68 86.38 0.40 6.70 16 11 C 0.05 2.42 0.57 -52.93 -0.03 2.39 16 12 C -0.10 -5.16 7.07 71.98 0.51 -4.66 16 13 C -0.10 -5.34 7.35 71.98 0.53 -4.81 16 14 C -0.53 -29.21 8.01 25.60 0.21 -29.01 16 15 H 0.06 3.03 7.74 -2.91 -0.02 3.01 16 16 C 0.02 1.24 5.15 84.65 0.44 1.68 16 17 N -0.91 -51.83 9.35 21.45 0.20 -51.63 16 18 Si 0.95 44.14 29.54 68.60 2.03 46.17 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 20 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 22 C 0.52 17.89 5.95 87.79 0.52 18.41 16 23 O -0.50 -19.62 17.07 -2.91 -0.05 -19.67 16 24 C 0.10 2.28 3.15 44.21 0.14 2.42 16 25 H 0.15 2.98 6.96 -2.38 -0.02 2.96 16 26 C -0.11 -1.73 5.11 30.71 0.16 -1.57 16 27 H 0.05 0.56 5.15 -2.39 -0.01 0.55 16 28 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.09 1.30 6.90 -2.39 -0.02 1.28 16 33 H 0.09 1.70 8.00 -2.39 -0.02 1.68 16 34 H 0.07 3.37 7.91 -2.39 -0.02 3.35 16 35 H 0.08 3.54 7.98 -2.39 -0.02 3.52 16 36 H 0.01 0.39 6.12 -2.39 -0.01 0.37 16 37 H 0.02 0.86 8.06 -2.39 -0.02 0.84 16 38 H 0.06 3.20 6.07 -2.38 -0.01 3.19 16 39 H 0.01 0.42 6.26 -2.39 -0.01 0.40 16 40 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.06 3.33 6.07 -2.39 -0.01 3.31 16 42 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 43 H 0.06 1.21 8.10 -2.39 -0.02 1.19 16 44 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 Total: -1.00 -70.03 332.31 4.35 -65.68 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 0.99 Total: 9.11 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: 5.39 Total: 18.92 kcal Atomic # 7 Polarization: -90.63 SS G_CDS: -3.95 Total: -94.58 kcal Atomic # 8 Polarization: -45.19 SS G_CDS: -0.11 Total: -45.30 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -70.03 4.35 -65.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334973274.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.401 kcal (2) G-P(sol) polarization free energy of solvation -70.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds