Wall clock time and date at job start Tue Mar 31 2020 06:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.23820 * 2 1 4 4 C 1.52885 * 109.26883 * 119.49066 * 2 1 3 5 5 C 1.53656 * 109.70196 * 182.57313 * 4 2 1 6 6 N 1.46515 * 107.35573 * 308.94938 * 5 4 2 7 7 C 1.33523 * 129.69456 * 233.42509 * 6 5 4 8 8 O 1.21539 * 124.00629 * 349.24419 * 7 6 5 9 9 N 1.34169 * 111.98780 * 169.21879 * 7 6 5 10 10 C 1.46494 * 124.17345 * 183.44313 * 9 7 6 11 11 C 1.53001 * 109.47145 * 90.02201 * 10 9 7 12 12 C 1.52997 * 109.47167 * 59.99924 * 11 10 9 13 13 C 1.52991 * 109.47196 * 299.99338 * 11 10 9 14 14 C 1.50700 * 109.46953 * 179.97438 * 11 10 9 15 15 H 1.08003 * 120.00531 * 4.66512 * 14 11 10 16 16 C 1.37882 * 120.00224 * 184.65825 * 14 11 10 17 17 N 1.31514 * 120.00310 * 152.42574 * 16 14 11 18 18 Si 1.86801 * 119.99723 * 332.15473 * 16 14 11 19 19 H 1.48501 * 109.47056 * 180.26916 * 18 16 14 20 20 H 1.48494 * 109.47296 * 300.27263 * 18 16 14 21 21 H 1.48498 * 109.47034 * 60.27451 * 18 16 14 22 22 C 1.35000 * 111.64245 * 3.70414 * 9 7 6 23 23 O 1.21236 * 127.17815 * 182.33840 * 22 9 7 24 24 C 1.47885 * 123.29920 * 50.20203 * 6 5 4 25 25 H 1.09010 * 111.64959 * 71.63603 * 24 6 5 26 26 C 1.53164 * 107.16738 * 308.37185 * 24 6 5 27 27 H 1.08994 * 109.47245 * 179.47637 * 1 2 3 28 28 H 1.09003 * 109.46744 * 299.48023 * 1 2 3 29 29 H 1.08999 * 109.46896 * 59.47621 * 1 2 3 30 30 H 1.08994 * 109.42898 * 302.64661 * 4 2 1 31 31 H 1.09001 * 109.43259 * 62.55033 * 4 2 1 32 32 H 1.08993 * 109.87952 * 189.47912 * 5 4 2 33 33 H 1.09002 * 109.87474 * 68.40898 * 5 4 2 34 34 H 1.08997 * 109.47805 * 330.01700 * 10 9 7 35 35 H 1.09006 * 109.47010 * 210.01679 * 10 9 7 36 36 H 1.09004 * 109.46925 * 172.23011 * 12 11 10 37 37 H 1.09002 * 109.47102 * 292.22613 * 12 11 10 38 38 H 1.08993 * 109.47665 * 52.22643 * 12 11 10 39 39 H 1.09002 * 109.47352 * 292.91790 * 13 11 10 40 40 H 1.09005 * 109.47356 * 52.91563 * 13 11 10 41 41 H 1.09003 * 109.47547 * 172.91304 * 13 11 10 42 42 H 0.97002 * 119.99325 * 354.58489 * 17 16 14 43 43 H 1.09000 * 109.60506 * 172.93653 * 26 24 6 44 44 H 1.09004 * 109.59835 * 293.40364 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8891 1.0291 0.0000 4 6 2.0345 -0.7105 1.2562 5 6 3.5697 -0.6599 1.2987 6 7 4.0588 -1.1390 0.0034 7 6 4.9377 -2.1057 -0.2718 8 8 5.6366 -2.6467 0.5626 9 7 4.9576 -2.4095 -1.5785 10 6 5.7698 -3.4800 -2.1621 11 6 4.9689 -4.7836 -2.1658 12 6 3.6969 -4.5983 -2.9956 13 6 4.5919 -5.1546 -0.7302 14 6 5.8042 -5.8846 -2.7668 15 1 6.8310 -5.6945 -3.0423 16 6 5.2576 -7.1348 -2.9649 17 7 5.7178 -7.9095 -3.9228 18 14 3.8683 -7.7313 -1.8678 19 1 3.4648 -9.0997 -2.2800 20 1 4.3277 -7.7547 -0.4559 21 1 2.7078 -6.8135 -1.9956 22 6 4.1411 -1.6033 -2.2896 23 8 3.9153 -1.6549 -3.4796 24 6 3.5643 -0.6246 -1.2919 25 1 3.9155 0.3896 -1.4824 26 6 2.0355 -0.7116 -1.2590 27 1 -0.3633 -1.0276 -0.0094 28 1 -0.3633 0.5058 0.8946 29 1 -0.3633 0.5219 -0.8852 30 1 1.6307 -0.2157 2.1395 31 1 1.7069 -1.7500 1.2412 32 1 3.9398 -1.3042 2.0961 33 1 3.9022 0.3648 1.4645 34 1 6.6761 -3.6120 -1.5711 35 1 6.0384 -3.2157 -3.1850 36 1 3.1969 -5.5597 -3.1137 37 1 3.0298 -3.9019 -2.4874 38 1 3.9575 -4.2014 -3.9766 39 1 5.4930 -5.4091 -0.1722 40 1 4.0967 -4.3082 -0.2542 41 1 3.9174 -6.0108 -0.7414 42 1 6.3867 -7.5729 -4.5394 43 1 1.6224 -0.2270 -2.1437 44 1 1.7292 -1.7574 -1.2356 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334973275.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:14 Heat of formation + Delta-G solvation = -39.132534 kcal Electronic energy + Delta-G solvation = -25940.045751 eV Core-core repulsion = 22472.455487 eV Total energy + Delta-G solvation = -3467.590264 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.38937 -38.44594 -38.18073 -36.23518 -35.32963 -33.51855 -31.96023 -31.20862 -28.57848 -26.65479 -26.24166 -24.75831 -24.34918 -23.46723 -21.79827 -20.91657 -19.82158 -18.89152 -17.18647 -16.90035 -16.60219 -16.28198 -15.35786 -15.27804 -14.84125 -14.77455 -14.48320 -13.99822 -13.81846 -13.64166 -13.38639 -13.01241 -12.81993 -12.60506 -12.23464 -12.15655 -11.94885 -11.86172 -11.65927 -11.45130 -11.09743 -11.06610 -10.92135 -10.79412 -10.44959 -10.13596 -9.99557 -9.85546 -9.73191 -9.43078 -8.95382 -8.93077 -8.63579 -8.09904 -6.48359 -4.04907 1.89792 2.33852 3.18957 3.32583 3.39840 3.47044 3.67436 4.08055 4.30205 4.40734 4.51388 4.59815 4.71750 4.83893 4.95942 5.17367 5.18846 5.23534 5.38404 5.42776 5.50486 5.56337 5.62927 5.72353 5.80023 5.87918 5.91743 5.98701 6.05710 6.09976 6.20031 6.47593 6.51628 6.61212 6.68231 6.76161 6.83505 7.08538 7.29387 7.44248 7.59415 7.70121 8.14403 8.37782 8.41282 8.88562 9.57787 10.88409 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020699 B = 0.005389 C = 0.005305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.396897 B = 5194.764751 C = 5276.323568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 H 0.075 0.925 4 C -0.136 4.136 5 C 0.152 3.848 6 N -0.629 5.629 7 C 0.706 3.294 8 O -0.538 6.538 9 N -0.570 5.570 10 C 0.139 3.861 11 C 0.032 3.968 12 C -0.134 4.134 13 C -0.139 4.139 14 C -0.604 4.604 15 H 0.061 0.939 16 C 0.047 3.953 17 N -0.890 5.890 18 Si 1.048 2.952 19 H -0.299 1.299 20 H -0.287 1.287 21 H -0.279 1.279 22 C 0.522 3.478 23 O -0.466 6.466 24 C 0.087 3.913 25 H 0.125 0.875 26 C -0.111 4.111 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.053 0.947 37 H 0.012 0.988 38 H 0.049 0.951 39 H 0.055 0.945 40 H 0.023 0.977 41 H 0.036 0.964 42 H 0.271 0.729 43 H 0.087 0.913 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.488 19.086 9.341 23.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 H 0.093 0.907 4 C -0.174 4.174 5 C 0.031 3.969 6 N -0.369 5.369 7 C 0.409 3.591 8 O -0.412 6.412 9 N -0.314 5.314 10 C 0.020 3.980 11 C 0.030 3.970 12 C -0.191 4.191 13 C -0.196 4.196 14 C -0.642 4.642 15 H 0.079 0.921 16 C -0.161 4.161 17 N -0.522 5.522 18 Si 0.881 3.119 19 H -0.227 1.227 20 H -0.215 1.215 21 H -0.207 1.207 22 C 0.308 3.692 23 O -0.335 6.335 24 C -0.020 4.020 25 H 0.142 0.858 26 C -0.149 4.149 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.072 0.928 37 H 0.031 0.969 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.042 0.958 41 H 0.054 0.946 42 H 0.081 0.919 43 H 0.106 0.894 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.095 17.402 9.547 22.268 hybrid contribution 0.987 1.301 -0.287 1.658 sum -9.108 18.703 9.261 22.771 Atomic orbital electron populations 1.21823 0.94421 1.02271 1.01899 1.21063 0.96214 0.99549 0.93909 0.90656 1.22147 0.94901 1.02115 0.98243 1.21484 0.93254 0.99825 0.82318 1.47641 1.43959 1.38738 1.06543 1.15631 0.80975 0.79804 0.82725 1.90966 1.44808 1.56397 1.48999 1.46836 1.42543 1.33637 1.08399 1.22012 0.93331 0.84709 0.97962 1.18768 0.93609 0.92371 0.92224 1.22175 0.97468 0.99810 0.99654 1.22281 1.00280 0.98361 0.98687 1.21599 0.99321 0.96369 1.46863 0.92134 1.25596 1.00549 0.93684 0.96235 1.70846 1.27872 1.40936 1.12510 0.84270 0.76715 0.74833 0.76117 1.22720 1.21459 1.20675 1.20638 0.78682 0.81600 0.88268 1.90785 1.59171 1.70392 1.13178 1.22375 0.97131 0.99232 0.83278 0.85793 1.21849 0.91026 1.02832 0.99213 0.92420 0.92417 0.92355 0.90091 0.90999 0.88730 0.90859 0.89574 0.89732 0.92849 0.96854 0.93170 0.92591 0.95837 0.94572 0.91876 0.89428 0.90508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.17 37.16 0.34 -0.61 16 2 C -0.09 -0.64 2.59 -90.58 -0.23 -0.88 16 3 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.14 -1.03 5.35 -26.45 -0.14 -1.18 16 5 C 0.15 1.41 7.01 -3.69 -0.03 1.39 16 6 N -0.63 -8.12 3.02 -171.87 -0.52 -8.64 16 7 C 0.71 12.35 6.60 -88.58 -0.58 11.77 16 8 O -0.54 -11.06 16.29 5.33 0.09 -10.97 16 9 N -0.57 -10.46 2.15 -121.01 -0.26 -10.72 16 10 C 0.14 2.96 4.68 -4.04 -0.02 2.94 16 11 C 0.03 0.78 0.57 -155.67 -0.09 0.69 16 12 C -0.13 -3.15 6.89 37.16 0.26 -2.89 16 13 C -0.14 -3.28 6.82 37.15 0.25 -3.02 16 14 C -0.60 -16.87 8.42 -34.44 -0.29 -17.16 16 15 H 0.06 1.79 7.99 -52.48 -0.42 1.37 16 16 C 0.05 1.35 5.07 -17.82 -0.09 1.26 16 17 N -0.89 -27.21 13.70 55.43 0.76 -26.45 16 18 Si 1.05 26.48 23.32 -169.99 -3.96 22.51 16 19 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 20 H -0.29 -6.99 6.77 56.52 0.38 -6.61 16 21 H -0.28 -6.62 5.66 56.52 0.32 -6.30 16 22 C 0.52 8.56 6.18 -10.64 -0.07 8.50 16 23 O -0.47 -8.75 16.62 5.60 0.09 -8.66 16 24 C 0.09 1.02 3.91 -68.00 -0.27 0.75 16 25 H 0.12 1.11 8.14 -51.92 -0.42 0.69 16 26 C -0.11 -1.09 4.79 -26.55 -0.13 -1.22 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.96 8.00 -51.93 -0.42 0.54 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.09 1.86 7.84 -51.93 -0.41 1.45 16 35 H 0.08 1.80 8.02 -51.93 -0.42 1.38 16 36 H 0.05 1.32 4.44 -51.93 -0.23 1.09 16 37 H 0.01 0.27 6.84 -51.93 -0.36 -0.08 16 38 H 0.05 1.20 7.79 -51.93 -0.40 0.79 16 39 H 0.05 1.36 8.13 -51.93 -0.42 0.94 16 40 H 0.02 0.50 5.64 -51.93 -0.29 0.21 16 41 H 0.04 0.86 2.85 -51.93 -0.15 0.71 16 42 H 0.27 8.20 8.73 -40.82 -0.36 7.85 16 43 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 0.92 8.09 -51.93 -0.42 0.50 16 LS Contribution 330.35 15.07 4.98 4.98 Total: -1.00 -32.85 330.35 -6.90 -39.74 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -6.99 Total: -2.12 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -1.08 Total: 0.33 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: -0.02 Total: -45.82 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: 0.18 Total: -19.63 kcal Atomic # 14 Polarization: 26.48 SS G_CDS: -3.96 Total: 22.51 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.85 -6.90 -39.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334973275.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.612 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds