Wall clock time and date at job start Tue Mar 31 2020 06:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.23820 * 2 1 4 4 C 1.52885 * 109.26883 * 119.49066 * 2 1 3 5 5 C 1.53656 * 109.70196 * 182.57313 * 4 2 1 6 6 N 1.46515 * 107.35573 * 308.94938 * 5 4 2 7 7 C 1.33523 * 129.69456 * 233.42509 * 6 5 4 8 8 O 1.21539 * 124.00629 * 349.24419 * 7 6 5 9 9 N 1.34169 * 111.98780 * 169.21879 * 7 6 5 10 10 C 1.46494 * 124.17345 * 183.44313 * 9 7 6 11 11 C 1.53001 * 109.47145 * 90.02201 * 10 9 7 12 12 C 1.52997 * 109.47167 * 59.99924 * 11 10 9 13 13 C 1.52991 * 109.47196 * 299.99338 * 11 10 9 14 14 C 1.50700 * 109.46953 * 179.97438 * 11 10 9 15 15 H 1.08003 * 120.00531 * 4.66512 * 14 11 10 16 16 C 1.37882 * 120.00224 * 184.65825 * 14 11 10 17 17 N 1.31514 * 120.00310 * 152.42574 * 16 14 11 18 18 Si 1.86801 * 119.99723 * 332.15473 * 16 14 11 19 19 H 1.48501 * 109.47056 * 180.26916 * 18 16 14 20 20 H 1.48494 * 109.47296 * 300.27263 * 18 16 14 21 21 H 1.48498 * 109.47034 * 60.27451 * 18 16 14 22 22 C 1.35000 * 111.64245 * 3.70414 * 9 7 6 23 23 O 1.21236 * 127.17815 * 182.33840 * 22 9 7 24 24 C 1.47885 * 123.29920 * 50.20203 * 6 5 4 25 25 H 1.09010 * 111.64959 * 71.63603 * 24 6 5 26 26 C 1.53164 * 107.16738 * 308.37185 * 24 6 5 27 27 H 1.08994 * 109.47245 * 179.47637 * 1 2 3 28 28 H 1.09003 * 109.46744 * 299.48023 * 1 2 3 29 29 H 1.08999 * 109.46896 * 59.47621 * 1 2 3 30 30 H 1.08994 * 109.42898 * 302.64661 * 4 2 1 31 31 H 1.09001 * 109.43259 * 62.55033 * 4 2 1 32 32 H 1.08993 * 109.87952 * 189.47912 * 5 4 2 33 33 H 1.09002 * 109.87474 * 68.40898 * 5 4 2 34 34 H 1.08997 * 109.47805 * 330.01700 * 10 9 7 35 35 H 1.09006 * 109.47010 * 210.01679 * 10 9 7 36 36 H 1.09004 * 109.46925 * 172.23011 * 12 11 10 37 37 H 1.09002 * 109.47102 * 292.22613 * 12 11 10 38 38 H 1.08993 * 109.47665 * 52.22643 * 12 11 10 39 39 H 1.09002 * 109.47352 * 292.91790 * 13 11 10 40 40 H 1.09005 * 109.47356 * 52.91563 * 13 11 10 41 41 H 1.09003 * 109.47547 * 172.91304 * 13 11 10 42 42 H 0.97002 * 119.99325 * 354.58489 * 17 16 14 43 43 H 1.09000 * 109.60506 * 172.93653 * 26 24 6 44 44 H 1.09004 * 109.59835 * 293.40364 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8891 1.0291 0.0000 4 6 2.0345 -0.7105 1.2562 5 6 3.5697 -0.6599 1.2987 6 7 4.0588 -1.1390 0.0034 7 6 4.9377 -2.1057 -0.2718 8 8 5.6366 -2.6467 0.5626 9 7 4.9576 -2.4095 -1.5785 10 6 5.7698 -3.4800 -2.1621 11 6 4.9689 -4.7836 -2.1658 12 6 3.6969 -4.5983 -2.9956 13 6 4.5919 -5.1546 -0.7302 14 6 5.8042 -5.8846 -2.7668 15 1 6.8310 -5.6945 -3.0423 16 6 5.2576 -7.1348 -2.9649 17 7 5.7178 -7.9095 -3.9228 18 14 3.8683 -7.7313 -1.8678 19 1 3.4648 -9.0997 -2.2800 20 1 4.3277 -7.7547 -0.4559 21 1 2.7078 -6.8135 -1.9956 22 6 4.1411 -1.6033 -2.2896 23 8 3.9153 -1.6549 -3.4796 24 6 3.5643 -0.6246 -1.2919 25 1 3.9155 0.3896 -1.4824 26 6 2.0355 -0.7116 -1.2590 27 1 -0.3633 -1.0276 -0.0094 28 1 -0.3633 0.5058 0.8946 29 1 -0.3633 0.5219 -0.8852 30 1 1.6307 -0.2157 2.1395 31 1 1.7069 -1.7500 1.2412 32 1 3.9398 -1.3042 2.0961 33 1 3.9022 0.3648 1.4645 34 1 6.6761 -3.6120 -1.5711 35 1 6.0384 -3.2157 -3.1850 36 1 3.1969 -5.5597 -3.1137 37 1 3.0298 -3.9019 -2.4874 38 1 3.9575 -4.2014 -3.9766 39 1 5.4930 -5.4091 -0.1722 40 1 4.0967 -4.3082 -0.2542 41 1 3.9174 -6.0108 -0.7414 42 1 6.3867 -7.5729 -4.5394 43 1 1.6224 -0.2270 -2.1437 44 1 1.7292 -1.7574 -1.2356 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334973275.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:13 Heat of formation + Delta-G solvation = -60.907467 kcal Electronic energy + Delta-G solvation = -25940.989983 eV Core-core repulsion = 22472.455487 eV Total energy + Delta-G solvation = -3468.534496 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.65156 -39.71875 -39.35042 -37.92249 -36.63844 -34.82088 -33.69353 -32.39867 -29.43236 -28.21200 -28.10269 -26.59746 -25.63049 -24.45741 -22.86559 -22.15147 -20.98871 -20.38066 -19.01803 -18.37568 -17.98264 -17.60474 -16.68597 -16.52614 -16.25919 -15.84170 -15.50457 -15.28348 -14.94273 -14.76306 -14.72069 -14.61046 -14.45581 -14.12715 -14.06170 -13.62324 -12.95808 -12.91178 -12.78279 -12.76442 -12.53217 -12.27341 -12.14159 -11.99178 -11.93006 -11.77899 -11.58915 -11.34314 -11.18249 -11.09804 -10.98128 -10.48359 -10.34906 -9.92282 -8.79395 -6.35860 0.61551 1.11719 1.35854 1.43047 1.65811 1.97903 2.05925 2.40555 2.93373 2.97645 3.46619 3.75181 3.90445 3.95414 3.99090 4.03742 4.07048 4.27161 4.30956 4.43400 4.53023 4.62302 4.63902 4.66978 4.72311 4.74128 4.80315 4.84822 4.89480 4.90830 4.98102 5.05082 5.12476 5.12813 5.27428 5.33494 5.39530 5.53119 5.54576 5.65146 5.98489 6.06444 6.17076 6.39489 6.54753 7.07686 7.33427 8.56183 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020699 B = 0.005389 C = 0.005305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.396897 B = 5194.764751 C = 5276.323568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 H 0.102 0.898 4 C -0.130 4.130 5 C 0.144 3.856 6 N -0.614 5.614 7 C 0.698 3.302 8 O -0.577 6.577 9 N -0.580 5.580 10 C 0.150 3.850 11 C 0.028 3.972 12 C -0.121 4.121 13 C -0.129 4.129 14 C -0.606 4.606 15 H 0.030 0.970 16 C 0.003 3.997 17 N -0.921 5.921 18 Si 1.078 2.922 19 H -0.301 1.301 20 H -0.272 1.272 21 H -0.252 1.252 22 C 0.513 3.487 23 O -0.495 6.495 24 C 0.101 3.899 25 H 0.167 0.833 26 C -0.109 4.109 27 H 0.043 0.957 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.111 0.889 31 H 0.050 0.950 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.042 0.958 37 H 0.033 0.967 38 H 0.038 0.962 39 H 0.042 0.958 40 H 0.039 0.961 41 H 0.036 0.964 42 H 0.260 0.740 43 H 0.102 0.898 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.037 22.148 11.311 27.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.100 4.100 3 H 0.120 0.880 4 C -0.168 4.168 5 C 0.024 3.976 6 N -0.353 5.353 7 C 0.401 3.599 8 O -0.454 6.454 9 N -0.324 5.324 10 C 0.029 3.971 11 C 0.026 3.974 12 C -0.179 4.179 13 C -0.186 4.186 14 C -0.643 4.643 15 H 0.048 0.952 16 C -0.199 4.199 17 N -0.554 5.554 18 Si 0.905 3.095 19 H -0.229 1.229 20 H -0.199 1.199 21 H -0.178 1.178 22 C 0.302 3.698 23 O -0.366 6.366 24 C -0.006 4.006 25 H 0.183 0.817 26 C -0.148 4.148 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.129 0.871 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.126 0.874 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.069 0.931 43 H 0.120 0.880 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.684 20.533 11.541 26.752 hybrid contribution 1.846 0.428 -0.929 2.110 sum -10.839 20.961 10.612 25.874 Atomic orbital electron populations 1.21805 0.93712 1.01733 1.02983 1.21070 0.96670 1.00348 0.91926 0.87992 1.22146 0.93392 1.01429 0.99868 1.21908 0.94390 1.01210 0.80052 1.47866 1.42151 1.36914 1.08387 1.15793 0.81632 0.80644 0.81843 1.90937 1.46592 1.58151 1.49715 1.46809 1.42821 1.33363 1.09421 1.21518 0.93081 0.84867 0.97682 1.18728 0.93631 0.92531 0.92538 1.21999 0.97217 0.99523 0.99115 1.22130 0.99763 0.98927 0.97804 1.21781 0.98462 0.97808 1.46264 0.95202 1.26756 1.02419 0.94131 0.96556 1.70947 1.29037 1.41621 1.13838 0.83887 0.75438 0.74874 0.75298 1.22935 1.19851 1.17806 1.21501 0.77904 0.81795 0.88606 1.90770 1.59978 1.71207 1.14659 1.22615 0.98162 0.99204 0.80599 0.81651 1.21923 0.89227 1.02021 1.01590 0.93796 0.90854 0.91825 0.87064 0.93083 0.89863 0.87362 0.90650 0.90522 0.93938 0.94841 0.94320 0.93923 0.94204 0.94566 0.93129 0.88000 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.17 71.98 0.66 -0.62 16 2 C -0.08 -0.79 2.59 -10.77 -0.03 -0.82 16 3 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 4 C -0.13 -1.43 5.35 30.78 0.16 -1.27 16 5 C 0.14 2.11 7.01 86.60 0.61 2.72 16 6 N -0.61 -14.09 3.02 -816.65 -2.47 -16.56 16 7 C 0.70 23.61 6.60 179.63 1.19 24.80 16 8 O -0.58 -23.56 16.29 -3.84 -0.06 -23.62 16 9 N -0.58 -20.98 2.15 -773.65 -1.67 -22.64 16 10 C 0.15 6.52 4.68 86.38 0.40 6.93 16 11 C 0.03 1.34 0.57 -52.93 -0.03 1.31 16 12 C -0.12 -5.67 6.89 71.98 0.50 -5.17 16 13 C -0.13 -6.02 6.82 71.98 0.49 -5.53 16 14 C -0.61 -34.94 8.42 25.60 0.22 -34.72 16 15 H 0.03 1.86 7.99 -2.91 -0.02 1.83 16 16 C 0.00 0.17 5.07 84.66 0.43 0.60 16 17 N -0.92 -58.09 13.70 21.45 0.29 -57.80 16 18 Si 1.08 53.13 23.32 68.60 1.60 54.73 16 19 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 20 H -0.27 -12.70 6.77 99.48 0.67 -12.02 16 21 H -0.25 -11.29 5.66 99.48 0.56 -10.73 16 22 C 0.51 16.09 6.18 87.78 0.54 16.63 16 23 O -0.49 -18.20 16.62 -2.89 -0.05 -18.25 16 24 C 0.10 2.00 3.91 44.19 0.17 2.17 16 25 H 0.17 2.09 8.14 -2.38 -0.02 2.07 16 26 C -0.11 -1.76 4.79 30.71 0.15 -1.61 16 27 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 1.47 8.00 -2.39 -0.02 1.45 16 33 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.08 3.40 7.84 -2.39 -0.02 3.38 16 35 H 0.08 3.39 8.02 -2.38 -0.02 3.37 16 36 H 0.04 2.05 4.44 -2.38 -0.01 2.04 16 37 H 0.03 1.39 6.84 -2.39 -0.02 1.38 16 38 H 0.04 1.86 7.79 -2.39 -0.02 1.84 16 39 H 0.04 2.06 8.13 -2.39 -0.02 2.04 16 40 H 0.04 1.69 5.64 -2.38 -0.01 1.68 16 41 H 0.04 1.67 2.85 -2.39 -0.01 1.66 16 42 H 0.26 16.45 8.73 -92.71 -0.81 15.64 16 43 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.05 1.11 8.09 -2.39 -0.02 1.10 16 Total: -1.00 -74.44 330.35 3.88 -70.56 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: 0.78 Total: 8.16 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 5.46 Total: 5.42 kcal Atomic # 7 Polarization: -93.16 SS G_CDS: -3.84 Total: -97.00 kcal Atomic # 8 Polarization: -41.76 SS G_CDS: -0.11 Total: -41.87 kcal Atomic # 14 Polarization: 53.13 SS G_CDS: 1.60 Total: 54.73 kcal Total: -74.44 3.88 -70.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334973275.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.650 kcal (2) G-P(sol) polarization free energy of solvation -74.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds