Wall clock time and date at job start Tue Mar 31 2020 06:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 110.43181 * 2 1 4 4 C 1.54265 * 110.48335 * 122.53975 * 2 1 3 5 5 C 1.53878 * 106.59613 * 142.29076 * 4 2 1 6 6 C 1.54267 * 106.59884 * 0.02562 * 5 4 2 7 7 H 1.08996 * 110.49236 * 95.19864 * 6 5 4 8 8 C 1.50699 * 110.48399 * 217.71530 * 6 5 4 9 9 O 1.21281 * 120.00477 * 96.30855 * 8 6 5 10 10 N 1.34781 * 119.99446 * 276.30172 * 8 6 5 11 11 C 1.46965 * 120.59768 * 5.59066 * 10 8 6 12 12 C 1.53370 * 108.63207 * 235.20569 * 11 10 8 13 13 N 1.46961 * 108.63553 * 310.56983 * 12 11 10 14 14 C 1.34782 * 120.59795 * 235.20654 * 13 12 11 15 15 O 1.21687 * 119.99390 * 4.22096 * 14 13 12 16 16 C 1.46372 * 120.00073 * 184.21312 * 14 13 12 17 17 H 1.07996 * 120.00397 * 351.96355 * 16 14 13 18 18 C 1.40053 * 119.99684 * 171.95336 * 16 14 13 19 19 N 1.30666 * 119.99901 * 0.02562 * 18 16 14 20 20 Si 1.86798 * 119.99882 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47159 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.47107 * 300.00493 * 20 18 16 23 23 H 1.48501 * 109.47134 * 60.00191 * 20 18 16 24 24 C 1.46966 * 118.81169 * 55.48364 * 13 12 11 25 25 C 1.46970 * 120.59203 * 185.56594 * 10 8 6 26 26 C 1.54890 * 104.31029 * 336.45137 * 6 5 4 27 27 H 1.09003 * 109.47053 * 298.91252 * 1 2 3 28 28 H 1.09000 * 109.46675 * 58.91396 * 1 2 3 29 29 H 1.08997 * 109.46806 * 178.91001 * 1 2 3 30 30 H 1.08996 * 110.03714 * 23.00626 * 4 2 1 31 31 H 1.09001 * 110.07323 * 261.59104 * 4 2 1 32 32 H 1.09002 * 110.03480 * 240.71447 * 5 4 2 33 33 H 1.09004 * 110.07213 * 119.30347 * 5 4 2 34 34 H 1.08995 * 109.60826 * 115.45696 * 11 10 8 35 35 H 1.08998 * 109.74835 * 355.03038 * 11 10 8 36 36 H 1.09011 * 109.60523 * 190.83010 * 12 11 10 37 37 H 1.08992 * 109.61397 * 70.32198 * 12 11 10 38 38 H 0.97005 * 119.99563 * 179.97438 * 19 18 16 39 39 H 1.09000 * 109.60871 * 64.26210 * 24 13 12 40 40 H 1.08994 * 109.61224 * 184.77889 * 24 13 12 41 41 H 1.08993 * 109.60760 * 244.54212 * 25 10 8 42 42 H 1.09003 * 109.60620 * 5.05330 * 25 10 8 43 43 H 1.09006 * 110.75337 * 156.18990 * 26 6 5 44 44 H 1.08995 * 110.76060 * 279.56288 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9106 1.0215 0.0000 4 6 2.0699 -0.7773 1.2183 5 6 3.3166 -1.5396 0.7360 6 6 3.4912 -1.1983 -0.7583 7 1 4.1921 -0.3728 -0.8818 8 6 3.9624 -2.4078 -1.5239 9 8 3.1610 -3.1062 -2.1077 10 7 5.2746 -2.7133 -1.5598 11 6 6.2426 -1.9500 -0.7596 12 6 7.3323 -1.4092 -1.6936 13 7 7.8208 -2.5119 -2.5333 14 6 9.1330 -2.8174 -2.5694 15 8 9.9146 -2.2293 -1.8455 16 6 9.6178 -3.8566 -3.4791 17 1 8.9142 -4.4672 -4.0254 18 6 10.9941 -4.0589 -3.6412 19 7 11.8453 -3.3203 -2.9800 20 14 11.6128 -5.3846 -4.8026 21 1 13.0977 -5.3962 -4.7945 22 1 11.1054 -6.7078 -4.3587 23 1 11.1270 -5.1042 -6.1776 24 6 6.8536 -3.2715 -3.3379 25 6 5.7631 -3.8160 -2.3997 26 6 2.0741 -0.7806 -1.2237 27 1 -0.3633 0.4969 0.8996 28 1 -0.3633 0.5306 -0.8801 29 1 -0.3633 -1.0275 -0.0195 30 1 1.3176 -1.4803 1.5760 31 1 2.3411 -0.0838 2.0143 32 1 3.1693 -2.6125 0.8596 33 1 4.1932 -1.2161 1.2973 34 1 6.6928 -2.6017 -0.0109 35 1 5.7385 -1.1192 -0.2659 36 1 8.1551 -1.0078 -1.1018 37 1 6.9162 -0.6246 -2.3255 38 1 12.7986 -3.4607 -3.0920 39 1 6.4041 -2.6165 -4.0843 40 1 7.3601 -4.1004 -3.8324 41 1 6.1792 -4.6005 -1.7677 42 1 4.9403 -4.2173 -2.9914 43 1 2.1300 -0.1369 -2.1016 44 1 1.4593 -1.6578 -1.4250 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336198899.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:27 Heat of formation + Delta-G solvation = -79.312374 kcal Electronic energy + Delta-G solvation = -24394.157187 eV Core-core repulsion = 20924.824594 eV Total energy + Delta-G solvation = -3469.332593 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.37836 -38.41909 -37.40309 -35.80550 -33.16484 -32.60867 -31.71276 -30.78106 -29.08685 -27.49612 -26.03237 -25.40025 -23.23749 -22.58422 -21.00245 -20.07675 -19.62587 -18.35988 -17.30737 -16.35372 -16.06229 -15.81090 -15.50815 -14.86203 -14.57505 -14.28985 -14.17973 -13.99233 -13.79809 -13.60100 -13.30233 -12.98756 -12.55209 -12.35500 -12.03967 -11.73840 -11.68662 -11.50040 -11.29902 -11.20909 -11.07427 -10.99288 -10.94553 -10.85431 -10.77272 -10.72695 -10.55487 -10.29780 -10.14967 -9.50686 -8.93670 -8.62771 -7.68734 -7.27823 -6.27704 -4.72473 2.74044 3.11704 3.13057 3.17386 3.18910 4.02716 4.30013 4.35978 4.42792 4.48973 4.51248 4.86663 5.02172 5.13041 5.20095 5.27136 5.32694 5.38007 5.40663 5.42176 5.51769 5.56381 5.59218 5.62700 5.70093 5.79500 5.81752 5.91497 5.93945 5.96950 6.04554 6.08309 6.12425 6.28118 6.29425 6.32604 6.50085 6.74298 7.38540 7.46452 7.59690 8.03115 8.24659 8.32221 8.94865 9.31250 10.48280 10.66751 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.038105 B = 0.003271 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.638496 B = 8558.620518 C = 8994.588900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.074 0.926 4 C -0.118 4.118 5 C -0.111 4.111 6 C -0.116 4.116 7 H 0.097 0.903 8 C 0.521 3.479 9 O -0.550 6.550 10 N -0.604 5.604 11 C 0.093 3.907 12 C 0.105 3.895 13 N -0.643 5.643 14 C 0.560 3.440 15 O -0.577 6.577 16 C -0.545 4.545 17 H 0.073 0.927 18 C 0.088 3.912 19 N -0.768 5.768 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.267 1.267 23 H -0.267 1.267 24 C 0.110 3.890 25 C 0.095 3.905 26 C -0.102 4.102 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.046 0.954 38 H 0.270 0.730 39 H 0.047 0.953 40 H 0.105 0.895 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.067 0.933 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.377 4.759 5.373 18.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.093 0.907 4 C -0.155 4.155 5 C -0.149 4.149 6 C -0.137 4.137 7 H 0.115 0.885 8 C 0.309 3.691 9 O -0.429 6.429 10 N -0.337 5.337 11 C -0.031 4.031 12 C -0.020 4.020 13 N -0.381 5.381 14 C 0.367 3.633 15 O -0.459 6.459 16 C -0.582 4.582 17 H 0.091 0.909 18 C -0.132 4.132 19 N -0.397 5.397 20 Si 0.732 3.268 21 H -0.205 1.205 22 H -0.192 1.192 23 H -0.192 1.192 24 C -0.015 4.015 25 C -0.028 4.028 26 C -0.140 4.140 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.123 0.877 41 H 0.088 0.912 42 H 0.110 0.890 43 H 0.086 0.914 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.120 4.753 5.514 18.604 hybrid contribution 0.419 -0.628 -0.588 0.957 sum -16.701 4.125 4.927 17.895 Atomic orbital electron populations 1.21791 0.94894 1.01933 1.01466 1.21999 0.95649 0.99212 0.94804 0.90736 1.22195 0.96943 0.98795 0.97598 1.22084 0.98696 1.01009 0.93106 1.22182 0.99089 0.96428 0.95990 0.88522 1.20524 0.81712 0.86151 0.80731 1.90640 1.53349 1.52337 1.46543 1.48107 1.06363 1.34014 1.45209 1.22276 0.90687 0.96031 0.94140 1.21506 0.96275 0.90475 0.93724 1.48190 1.07840 1.34553 1.47543 1.18272 0.78293 0.83640 0.83136 1.90589 1.53576 1.56482 1.45287 1.20919 0.91880 1.18632 1.26736 0.90893 1.25719 0.96751 0.95704 0.94991 1.69988 1.02613 1.33603 1.33466 0.86435 0.77928 0.81481 0.80984 1.20518 1.19177 1.19201 1.21904 0.89758 0.97217 0.92607 1.22221 0.97826 0.88761 0.94028 1.22513 0.93908 1.00450 0.97114 0.92790 0.92670 0.92508 0.91552 0.91636 0.91414 0.91002 0.90983 0.89662 0.88539 0.93527 0.91929 0.93481 0.87680 0.91243 0.89020 0.91403 0.89721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.12 37.16 0.34 -0.74 16 2 C -0.10 -0.82 3.45 -88.90 -0.31 -1.13 16 3 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 4 C -0.12 -0.97 6.38 -25.61 -0.16 -1.14 16 5 C -0.11 -1.08 6.04 -25.61 -0.15 -1.24 16 6 C -0.12 -1.30 2.24 -90.11 -0.20 -1.51 16 7 H 0.10 0.99 6.83 -51.93 -0.35 0.63 16 8 C 0.52 7.80 6.77 -10.98 -0.07 7.72 16 9 O -0.55 -9.87 15.17 5.56 0.08 -9.79 16 10 N -0.60 -9.31 2.95 -172.21 -0.51 -9.82 16 11 C 0.09 1.35 6.38 -3.60 -0.02 1.32 16 12 C 0.11 1.91 6.60 -3.60 -0.02 1.89 16 13 N -0.64 -14.02 2.94 -173.88 -0.51 -14.53 16 14 C 0.56 15.36 7.61 -12.99 -0.10 15.26 16 15 O -0.58 -17.97 14.48 5.20 0.08 -17.89 16 16 C -0.55 -14.78 8.87 -35.63 -0.32 -15.10 16 17 H 0.07 1.79 5.65 -52.49 -0.30 1.49 16 18 C 0.09 2.39 5.50 -17.37 -0.10 2.30 16 19 N -0.77 -22.45 11.86 55.55 0.66 -21.79 16 20 Si 0.91 19.61 29.56 -169.99 -5.02 14.58 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 24 C 0.11 2.03 6.52 -3.37 -0.02 2.01 16 25 C 0.09 1.56 6.60 -3.36 -0.02 1.53 16 26 C -0.10 -1.08 5.57 -24.68 -0.14 -1.22 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.54 7.84 -51.93 -0.41 0.14 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.75 7.83 -51.93 -0.41 0.34 16 33 H 0.07 0.62 7.64 -51.93 -0.40 0.23 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.09 0.96 4.99 -51.93 -0.26 0.70 16 36 H 0.10 1.93 6.99 -51.92 -0.36 1.56 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.27 7.18 8.29 -40.82 -0.34 6.84 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.11 1.99 5.33 -51.93 -0.28 1.71 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.09 1.46 7.02 -51.93 -0.36 1.10 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.08 1.05 7.18 -51.93 -0.37 0.67 16 LS Contribution 342.89 15.07 5.17 5.17 Total: -1.00 -33.85 342.89 -8.22 -42.07 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.86 Total: 2.03 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: -1.30 Total: 9.98 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: -0.36 Total: -46.14 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: 0.16 Total: -27.68 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.85 -8.22 -42.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336198899.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.247 kcal (2) G-P(sol) polarization free energy of solvation -33.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds