Wall clock time and date at job start Tue Mar 31 2020 06:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 110.43181 * 2 1 4 4 C 1.54265 * 110.48335 * 122.53975 * 2 1 3 5 5 C 1.53878 * 106.59613 * 142.29076 * 4 2 1 6 6 C 1.54267 * 106.59884 * 0.02562 * 5 4 2 7 7 H 1.08996 * 110.49236 * 95.19864 * 6 5 4 8 8 C 1.50699 * 110.48399 * 217.71530 * 6 5 4 9 9 O 1.21281 * 120.00477 * 96.30855 * 8 6 5 10 10 N 1.34781 * 119.99446 * 276.30172 * 8 6 5 11 11 C 1.46965 * 120.59768 * 5.59066 * 10 8 6 12 12 C 1.53370 * 108.63207 * 235.20569 * 11 10 8 13 13 N 1.46961 * 108.63553 * 310.56983 * 12 11 10 14 14 C 1.34782 * 120.59795 * 235.20654 * 13 12 11 15 15 O 1.21687 * 119.99390 * 4.22096 * 14 13 12 16 16 C 1.46372 * 120.00073 * 184.21312 * 14 13 12 17 17 H 1.07996 * 120.00397 * 351.96355 * 16 14 13 18 18 C 1.40053 * 119.99684 * 171.95336 * 16 14 13 19 19 N 1.30666 * 119.99901 * 0.02562 * 18 16 14 20 20 Si 1.86798 * 119.99882 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47159 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.47107 * 300.00493 * 20 18 16 23 23 H 1.48501 * 109.47134 * 60.00191 * 20 18 16 24 24 C 1.46966 * 118.81169 * 55.48364 * 13 12 11 25 25 C 1.46970 * 120.59203 * 185.56594 * 10 8 6 26 26 C 1.54890 * 104.31029 * 336.45137 * 6 5 4 27 27 H 1.09003 * 109.47053 * 298.91252 * 1 2 3 28 28 H 1.09000 * 109.46675 * 58.91396 * 1 2 3 29 29 H 1.08997 * 109.46806 * 178.91001 * 1 2 3 30 30 H 1.08996 * 110.03714 * 23.00626 * 4 2 1 31 31 H 1.09001 * 110.07323 * 261.59104 * 4 2 1 32 32 H 1.09002 * 110.03480 * 240.71447 * 5 4 2 33 33 H 1.09004 * 110.07213 * 119.30347 * 5 4 2 34 34 H 1.08995 * 109.60826 * 115.45696 * 11 10 8 35 35 H 1.08998 * 109.74835 * 355.03038 * 11 10 8 36 36 H 1.09011 * 109.60523 * 190.83010 * 12 11 10 37 37 H 1.08992 * 109.61397 * 70.32198 * 12 11 10 38 38 H 0.97005 * 119.99563 * 179.97438 * 19 18 16 39 39 H 1.09000 * 109.60871 * 64.26210 * 24 13 12 40 40 H 1.08994 * 109.61224 * 184.77889 * 24 13 12 41 41 H 1.08993 * 109.60760 * 244.54212 * 25 10 8 42 42 H 1.09003 * 109.60620 * 5.05330 * 25 10 8 43 43 H 1.09006 * 110.75337 * 156.18990 * 26 6 5 44 44 H 1.08995 * 110.76060 * 279.56288 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9106 1.0215 0.0000 4 6 2.0699 -0.7773 1.2183 5 6 3.3166 -1.5396 0.7360 6 6 3.4912 -1.1983 -0.7583 7 1 4.1921 -0.3728 -0.8818 8 6 3.9624 -2.4078 -1.5239 9 8 3.1610 -3.1062 -2.1077 10 7 5.2746 -2.7133 -1.5598 11 6 6.2426 -1.9500 -0.7596 12 6 7.3323 -1.4092 -1.6936 13 7 7.8208 -2.5119 -2.5333 14 6 9.1330 -2.8174 -2.5694 15 8 9.9146 -2.2293 -1.8455 16 6 9.6178 -3.8566 -3.4791 17 1 8.9142 -4.4672 -4.0254 18 6 10.9941 -4.0589 -3.6412 19 7 11.8453 -3.3203 -2.9800 20 14 11.6128 -5.3846 -4.8026 21 1 13.0977 -5.3962 -4.7945 22 1 11.1054 -6.7078 -4.3587 23 1 11.1270 -5.1042 -6.1776 24 6 6.8536 -3.2715 -3.3379 25 6 5.7631 -3.8160 -2.3997 26 6 2.0741 -0.7806 -1.2237 27 1 -0.3633 0.4969 0.8996 28 1 -0.3633 0.5306 -0.8801 29 1 -0.3633 -1.0275 -0.0195 30 1 1.3176 -1.4803 1.5760 31 1 2.3411 -0.0838 2.0143 32 1 3.1693 -2.6125 0.8596 33 1 4.1932 -1.2161 1.2973 34 1 6.6928 -2.6017 -0.0109 35 1 5.7385 -1.1192 -0.2659 36 1 8.1551 -1.0078 -1.1018 37 1 6.9162 -0.6246 -2.3255 38 1 12.7986 -3.4607 -3.0920 39 1 6.4041 -2.6165 -4.0843 40 1 7.3601 -4.1004 -3.8324 41 1 6.1792 -4.6005 -1.7677 42 1 4.9403 -4.2173 -2.9914 43 1 2.1300 -0.1369 -2.1016 44 1 1.4593 -1.6578 -1.4250 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336198899.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:26 Heat of formation + Delta-G solvation = -100.856370 kcal Electronic energy + Delta-G solvation = -24395.091405 eV Core-core repulsion = 20924.824594 eV Total energy + Delta-G solvation = -3470.266810 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.56878 -39.91607 -38.55476 -37.45193 -34.83547 -34.57486 -32.78844 -31.99097 -29.92819 -29.11298 -27.78674 -26.27006 -24.63660 -23.91531 -22.30332 -21.12143 -20.77729 -19.72535 -18.67689 -18.00172 -17.54938 -16.97373 -16.85339 -16.26561 -16.11039 -15.84949 -15.71363 -15.26582 -14.67297 -14.48989 -14.45457 -14.18977 -14.01069 -13.59939 -13.47299 -13.23600 -13.04332 -12.84892 -12.72022 -12.57179 -12.32403 -12.27614 -12.10936 -12.04234 -12.00626 -11.76410 -11.64369 -11.47098 -11.25014 -10.92970 -10.73251 -10.07395 -9.80593 -9.01130 -8.30840 -6.84666 1.40551 1.42857 1.54350 1.55927 1.89371 2.23938 2.45074 2.80379 3.37118 3.56290 3.60028 3.69695 3.89411 3.93903 4.13232 4.18879 4.24082 4.36299 4.39954 4.46355 4.47597 4.56966 4.60369 4.68823 4.72098 4.75410 4.77467 4.86886 4.88472 5.03768 5.03857 5.13709 5.16763 5.25958 5.34992 5.36812 5.37676 5.46759 5.60494 5.69694 6.10018 6.29811 6.42768 6.87541 7.11041 7.35567 8.43823 8.65160 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.038105 B = 0.003271 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.638496 B = 8558.620518 C = 8994.588900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 H 0.088 0.912 4 C -0.115 4.115 5 C -0.110 4.110 6 C -0.113 4.113 7 H 0.116 0.884 8 C 0.519 3.481 9 O -0.582 6.582 10 N -0.607 5.607 11 C 0.106 3.894 12 C 0.101 3.899 13 N -0.645 5.645 14 C 0.545 3.455 15 O -0.627 6.627 16 C -0.571 4.571 17 H 0.093 0.907 18 C 0.032 3.968 19 N -0.822 5.822 20 Si 0.992 3.008 21 H -0.276 1.276 22 H -0.255 1.255 23 H -0.254 1.254 24 C 0.113 3.887 25 C 0.103 3.897 26 C -0.103 4.103 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.050 0.950 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.126 0.874 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.274 0.726 39 H 0.058 0.942 40 H 0.098 0.902 41 H 0.064 0.936 42 H 0.098 0.902 43 H 0.069 0.931 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.875 4.994 5.360 20.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.107 0.893 4 C -0.152 4.152 5 C -0.148 4.148 6 C -0.134 4.134 7 H 0.133 0.867 8 C 0.310 3.690 9 O -0.462 6.462 10 N -0.339 5.339 11 C -0.017 4.017 12 C -0.023 4.023 13 N -0.382 5.382 14 C 0.351 3.649 15 O -0.514 6.514 16 C -0.607 4.607 17 H 0.111 0.889 18 C -0.184 4.184 19 N -0.451 5.451 20 Si 0.812 3.188 21 H -0.201 1.201 22 H -0.179 1.179 23 H -0.178 1.178 24 C -0.012 4.012 25 C -0.021 4.021 26 C -0.141 4.141 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.144 0.856 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.116 0.884 41 H 0.083 0.917 42 H 0.116 0.884 43 H 0.088 0.912 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.690 4.998 5.504 20.115 hybrid contribution 0.790 -0.663 -0.583 1.185 sum -17.900 4.335 4.921 19.064 Atomic orbital electron populations 1.21788 0.94361 1.01645 1.02259 1.21995 0.96111 0.99491 0.93494 0.89330 1.22200 0.96120 0.98941 0.97973 1.22116 1.00279 1.00324 0.92057 1.22283 0.99730 0.94962 0.96444 0.86655 1.21203 0.80943 0.86690 0.80181 1.90628 1.54010 1.53662 1.47939 1.48177 1.06860 1.33755 1.45155 1.22193 0.89663 0.96987 0.92849 1.21690 0.96647 0.89977 0.93970 1.48029 1.06918 1.35325 1.47965 1.18592 0.79817 0.83635 0.82830 1.90540 1.55657 1.58105 1.47097 1.21463 0.93007 1.19193 1.27044 0.88889 1.26922 0.96757 0.98115 0.96564 1.70154 1.03202 1.36035 1.35730 0.85147 0.77258 0.77934 0.78492 1.20057 1.17915 1.17799 1.21974 0.89421 0.96881 0.92884 1.22028 0.97170 0.89037 0.93860 1.22507 0.93251 0.99925 0.98406 0.91482 0.92445 0.93351 0.91695 0.89788 0.93069 0.89339 0.91708 0.85579 0.90767 0.91802 0.91566 0.92413 0.88401 0.91736 0.88403 0.91209 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.12 71.98 0.66 -1.18 16 2 C -0.09 -1.29 3.45 -9.68 -0.03 -1.33 16 3 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 4 C -0.11 -1.56 6.38 31.32 0.20 -1.36 16 5 C -0.11 -1.85 6.04 31.32 0.19 -1.66 16 6 C -0.11 -2.27 2.24 -10.46 -0.02 -2.30 16 7 H 0.12 1.92 6.83 -2.39 -0.02 1.90 16 8 C 0.52 14.76 6.77 87.66 0.59 15.36 16 9 O -0.58 -20.46 15.17 -3.03 -0.05 -20.51 16 10 N -0.61 -17.83 2.95 -817.15 -2.41 -20.24 16 11 C 0.11 2.92 6.38 86.41 0.55 3.47 16 12 C 0.10 3.63 6.60 86.42 0.57 4.20 16 13 N -0.65 -28.36 2.94 -822.24 -2.42 -30.78 16 14 C 0.54 30.70 7.61 86.36 0.66 31.35 16 15 O -0.63 -40.67 14.48 -4.31 -0.06 -40.73 16 16 C -0.57 -31.36 8.87 24.83 0.22 -31.14 16 17 H 0.09 4.55 5.65 -2.91 -0.02 4.53 16 18 C 0.03 1.73 5.50 85.31 0.47 2.20 16 19 N -0.82 -49.38 11.86 21.84 0.26 -49.12 16 20 Si 0.99 40.16 29.56 68.60 2.03 42.18 16 21 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 22 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 23 H -0.25 -9.66 7.11 99.48 0.71 -8.96 16 24 C 0.11 4.09 6.52 86.56 0.56 4.65 16 25 C 0.10 3.30 6.60 86.56 0.57 3.87 16 26 C -0.10 -1.99 5.57 31.93 0.18 -1.81 16 27 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.91 7.84 -2.39 -0.02 0.89 16 31 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.05 1.04 7.83 -2.39 -0.02 1.03 16 33 H 0.09 1.21 7.64 -2.39 -0.02 1.19 16 34 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.13 2.42 4.99 -2.39 -0.01 2.41 16 36 H 0.07 3.02 6.99 -2.38 -0.02 3.01 16 37 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.27 15.01 8.29 -92.70 -0.77 14.24 16 39 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.10 3.67 5.33 -2.39 -0.01 3.66 16 41 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.10 3.05 7.02 -2.39 -0.02 3.03 16 43 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 44 H 0.06 1.50 7.18 -2.39 -0.02 1.48 16 Total: -1.00 -76.16 342.89 3.71 -72.45 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.99 Total: 22.41 kcal Atomic # 6 Polarization: 18.97 SS G_CDS: 5.36 Total: 24.33 kcal Atomic # 7 Polarization: -95.57 SS G_CDS: -4.57 Total: -100.14 kcal Atomic # 8 Polarization: -61.13 SS G_CDS: -0.11 Total: -61.24 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.18 kcal Total: -76.16 3.71 -72.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336198899.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.403 kcal (2) G-P(sol) polarization free energy of solvation -76.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds