Wall clock time and date at job start Tue Mar 31 2020 07:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46500 * 109.47014 * 2 1 4 4 C 1.46765 * 124.34782 * 269.99807 * 3 2 1 5 5 C 1.54477 * 105.47263 * 162.96185 * 4 3 2 6 6 H 1.08994 * 111.00808 * 267.28079 * 5 4 3 7 7 C 1.50703 * 110.96617 * 143.53026 * 5 4 3 8 8 O 1.21280 * 120.00261 * 345.18694 * 7 5 4 9 9 N 1.34782 * 119.99935 * 165.18328 * 7 5 4 10 10 C 1.46932 * 120.62671 * 355.03922 * 9 7 5 11 11 C 1.53198 * 108.77147 * 233.58434 * 10 9 7 12 12 C 1.53040 * 109.31317 * 305.36783 * 11 10 9 13 13 C 1.50705 * 109.45604 * 181.38699 * 12 11 10 14 14 H 1.07996 * 120.00301 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99723 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.71963 * 15 13 12 17 17 Si 1.86795 * 119.99863 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47322 * 59.99803 * 17 15 13 19 19 H 1.48500 * 109.47138 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47248 * 299.99868 * 17 15 13 21 21 C 1.53039 * 109.53936 * 61.36762 * 12 11 10 22 22 C 1.46922 * 120.63244 * 175.01602 * 9 7 5 23 23 C 1.54628 * 101.76497 * 25.41806 * 5 4 3 24 24 C 1.34421 * 124.35152 * 89.97425 * 3 2 1 25 25 O 1.21281 * 124.93877 * 0.38825 * 24 3 2 26 26 H 1.09003 * 109.46651 * 300.00418 * 1 2 3 27 27 H 1.08998 * 109.46641 * 59.99857 * 1 2 3 28 28 H 1.08997 * 109.46903 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46912 * 239.99497 * 2 1 3 30 30 H 1.09004 * 109.46624 * 119.99717 * 2 1 3 31 31 H 1.09001 * 110.24388 * 43.95971 * 4 3 2 32 32 H 1.09001 * 110.24473 * 281.96114 * 4 3 2 33 33 H 1.08996 * 109.58590 * 113.80241 * 10 9 7 34 34 H 1.08997 * 109.58723 * 353.37374 * 10 9 7 35 35 H 1.09000 * 109.49383 * 185.41284 * 11 10 9 36 36 H 1.08997 * 109.49517 * 65.32142 * 11 10 9 37 37 H 1.09001 * 109.45667 * 301.35745 * 12 11 10 38 38 H 0.96996 * 119.99944 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.49806 * 58.58464 * 21 12 11 40 40 H 1.08994 * 109.49601 * 178.68291 * 21 12 11 41 41 H 1.09004 * 109.58802 * 246.20228 * 22 9 7 42 42 H 1.08999 * 109.58865 * 6.62580 * 22 9 7 43 43 H 1.08998 * 110.49139 * 93.87901 * 23 5 4 44 44 H 1.09003 * 110.48615 * 216.52002 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1619 -1.2117 5 6 2.3524 3.6346 -0.7489 6 1 1.3778 4.1131 -0.8452 7 6 3.4032 4.3989 -1.5123 8 8 4.2391 3.8016 -2.1568 9 7 3.4139 5.7462 -1.4790 10 6 2.3460 6.4865 -0.7931 11 6 1.7502 7.5078 -1.7672 12 6 2.8701 8.3905 -2.3229 13 6 2.2831 9.4185 -3.2556 14 1 1.2182 9.4404 -3.4338 15 6 3.1056 10.3317 -3.8806 16 7 4.4017 10.3091 -3.6585 17 14 2.3780 11.6063 -5.0360 18 1 1.4049 12.4483 -4.2948 19 1 3.4643 12.4637 -5.5746 20 1 1.6861 10.9207 -6.1569 21 6 3.8739 7.5236 -3.0864 22 6 4.4939 6.5025 -2.1273 23 6 2.7497 3.4824 0.7377 24 6 2.2708 2.0965 1.1098 25 8 2.1337 1.6901 2.2442 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.4935 2.0261 -1.9385 32 1 3.2503 1.8641 -1.6427 33 1 2.7585 7.0048 0.0725 34 1 1.5696 5.7929 -0.4706 35 1 1.0233 8.1288 -1.2436 36 1 1.2585 6.9845 -2.5872 37 1 3.3775 8.8943 -1.5002 38 1 4.9803 10.9513 -4.0985 39 1 3.3623 7.0001 -3.8940 40 1 4.6587 8.1558 -3.5016 41 1 5.0816 7.0220 -1.3704 42 1 5.1346 5.8195 -2.6850 43 1 3.8310 3.5561 0.8532 44 1 2.2480 4.2354 1.3457 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336629474.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:22 Heat of formation + Delta-G solvation = -76.784716 kcal Electronic energy + Delta-G solvation = -24355.887222 eV Core-core repulsion = 20886.664237 eV Total energy + Delta-G solvation = -3469.222985 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.99218 -39.43230 -37.08942 -36.31921 -34.19089 -33.54115 -31.20005 -30.62301 -29.58873 -27.87863 -26.35347 -24.30451 -23.28920 -22.75717 -21.88932 -19.83736 -19.53243 -18.44570 -17.54070 -16.95158 -16.45003 -15.90091 -15.73469 -14.96110 -14.82598 -14.61007 -14.23870 -13.96141 -13.68655 -13.44074 -13.34934 -13.12121 -12.85801 -12.72392 -12.56725 -12.29353 -12.18695 -11.84309 -11.67809 -11.45610 -11.32081 -11.17288 -10.95838 -10.73139 -10.49872 -10.14845 -10.08079 -9.64708 -9.61178 -9.21222 -8.99306 -8.91291 -8.42392 -8.11746 -6.06821 -4.13739 2.40154 2.66214 2.81129 3.26842 3.27991 3.32459 3.34467 4.07603 4.24213 4.37172 4.55861 4.68340 4.77589 4.90170 4.93734 5.09226 5.23128 5.26932 5.33142 5.37654 5.43869 5.53634 5.61054 5.68094 5.73751 5.84330 5.88528 5.97275 6.17334 6.31780 6.33146 6.37277 6.53246 6.73033 6.87990 6.89117 7.11228 7.25880 7.63670 7.76508 7.86702 7.98325 8.00208 8.33625 8.37743 8.89407 9.51735 10.98687 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032685 B = 0.003200 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.469189 B = 8748.894814 C = 8870.842003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.619 5.619 4 C 0.115 3.885 5 C -0.126 4.126 6 H 0.115 0.885 7 C 0.522 3.478 8 O -0.549 6.549 9 N -0.593 5.593 10 C 0.103 3.897 11 C -0.125 4.125 12 C 0.049 3.951 13 C -0.516 4.516 14 H 0.054 0.946 15 C 0.062 3.938 16 N -0.890 5.890 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.278 1.278 21 C -0.123 4.123 22 C 0.108 3.892 23 C -0.139 4.139 24 C 0.522 3.478 25 O -0.534 6.534 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.028 0.972 38 H 0.262 0.738 39 H 0.038 0.962 40 H 0.104 0.896 41 H 0.061 0.939 42 H 0.077 0.923 43 H 0.109 0.891 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.299 -15.283 5.955 17.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.000 4.000 3 N -0.353 5.353 4 C -0.008 4.008 5 C -0.147 4.147 6 H 0.133 0.867 7 C 0.308 3.692 8 O -0.428 6.428 9 N -0.325 5.325 10 C -0.020 4.020 11 C -0.163 4.163 12 C 0.031 3.969 13 C -0.554 4.554 14 H 0.072 0.928 15 C -0.139 4.139 16 N -0.529 5.529 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.161 4.161 22 C -0.013 4.013 23 C -0.180 4.180 24 C 0.310 3.690 25 O -0.411 6.411 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.046 0.954 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.122 0.878 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.127 0.873 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.778 -15.767 6.156 17.588 hybrid contribution -0.484 0.909 -0.789 1.297 sum -5.262 -14.859 5.367 16.652 Atomic orbital electron populations 1.22167 0.95694 1.02353 1.02593 1.21346 0.94389 0.81037 1.03242 1.48361 1.65704 1.13932 1.07327 1.22044 1.03484 0.88379 0.86896 1.22253 1.00787 0.96267 0.95424 0.86746 1.19897 0.85425 0.82521 0.81341 1.90664 1.40546 1.68266 1.43344 1.48220 1.25987 1.04741 1.53534 1.21962 0.89099 0.94986 0.95929 1.22027 0.99967 0.96780 0.97550 1.18631 0.91125 0.91934 0.95254 1.21139 0.93557 1.14070 1.26602 0.92761 1.24962 0.94877 0.97413 0.96674 1.69828 1.03062 1.36547 1.43451 0.86673 0.78705 0.81492 0.81217 1.20307 1.21293 1.20329 1.22014 1.01823 0.95547 0.96743 1.21941 0.88549 0.94285 0.96543 1.22281 1.04486 0.96305 0.94922 1.20781 0.76291 0.87597 0.84359 1.90718 1.53713 1.75574 1.21077 0.92198 0.92274 0.91402 0.90177 0.89995 0.89909 0.88676 0.91497 0.91115 0.91923 0.92804 0.95424 0.92840 0.94274 0.87822 0.92099 0.90479 0.87282 0.87147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 10.24 37.16 0.38 -0.91 16 2 C 0.12 1.04 6.65 -4.04 -0.03 1.02 16 3 N -0.62 -6.61 2.93 -172.41 -0.51 -7.11 16 4 C 0.12 1.19 6.81 -3.12 -0.02 1.16 16 5 C -0.13 -1.39 2.56 -90.14 -0.23 -1.62 16 6 H 0.11 1.09 6.47 -51.93 -0.34 0.75 16 7 C 0.52 7.84 6.87 -10.98 -0.08 7.76 16 8 O -0.55 -9.92 14.95 5.56 0.08 -9.84 16 9 N -0.59 -9.49 2.97 -172.76 -0.51 -10.00 16 10 C 0.10 1.46 6.32 -3.70 -0.02 1.44 16 11 C -0.13 -2.23 5.30 -26.61 -0.14 -2.37 16 12 C 0.05 1.10 2.06 -91.73 -0.19 0.92 16 13 C -0.52 -13.26 8.56 -34.44 -0.29 -13.55 16 14 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 15 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 16 N -0.89 -24.16 11.32 55.43 0.63 -23.53 16 17 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 C -0.12 -2.69 5.15 -26.61 -0.14 -2.83 16 22 C 0.11 2.00 6.44 -3.71 -0.02 1.98 16 23 C -0.14 -1.51 6.41 -26.74 -0.17 -1.68 16 24 C 0.52 6.63 8.02 -10.86 -0.09 6.54 16 25 O -0.53 -8.56 17.59 5.56 0.10 -8.46 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.76 7.92 -51.93 -0.41 0.35 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.10 1.12 6.85 -51.93 -0.36 0.76 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.78 5.53 -51.93 -0.29 0.49 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 39 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.10 2.57 6.04 -51.93 -0.31 2.26 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.08 1.46 7.00 -51.93 -0.36 1.10 16 43 H 0.11 1.23 7.89 -51.93 -0.41 0.82 16 44 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 348.77 15.07 5.26 5.26 Total: -1.00 -30.46 348.77 -8.20 -38.67 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -7.09 Total: 0.17 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -1.14 Total: -0.60 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: -0.39 Total: -40.64 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: 0.18 Total: -18.30 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.46 -8.20 -38.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336629474.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.118 kcal (2) G-P(sol) polarization free energy of solvation -30.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds