Wall clock time and date at job start Tue Mar 31 2020 07:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46500 * 109.47014 * 2 1 4 4 C 1.46765 * 124.34782 * 269.99807 * 3 2 1 5 5 C 1.54477 * 105.47263 * 162.96185 * 4 3 2 6 6 H 1.08994 * 111.00808 * 267.28079 * 5 4 3 7 7 C 1.50703 * 110.96617 * 143.53026 * 5 4 3 8 8 O 1.21280 * 120.00261 * 345.18694 * 7 5 4 9 9 N 1.34782 * 119.99935 * 165.18328 * 7 5 4 10 10 C 1.46932 * 120.62671 * 355.03922 * 9 7 5 11 11 C 1.53198 * 108.77147 * 233.58434 * 10 9 7 12 12 C 1.53040 * 109.31317 * 305.36783 * 11 10 9 13 13 C 1.50705 * 109.45604 * 181.38699 * 12 11 10 14 14 H 1.07996 * 120.00301 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99723 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.71963 * 15 13 12 17 17 Si 1.86795 * 119.99863 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47322 * 59.99803 * 17 15 13 19 19 H 1.48500 * 109.47138 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47248 * 299.99868 * 17 15 13 21 21 C 1.53039 * 109.53936 * 61.36762 * 12 11 10 22 22 C 1.46922 * 120.63244 * 175.01602 * 9 7 5 23 23 C 1.54628 * 101.76497 * 25.41806 * 5 4 3 24 24 C 1.34421 * 124.35152 * 89.97425 * 3 2 1 25 25 O 1.21281 * 124.93877 * 0.38825 * 24 3 2 26 26 H 1.09003 * 109.46651 * 300.00418 * 1 2 3 27 27 H 1.08998 * 109.46641 * 59.99857 * 1 2 3 28 28 H 1.08997 * 109.46903 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46912 * 239.99497 * 2 1 3 30 30 H 1.09004 * 109.46624 * 119.99717 * 2 1 3 31 31 H 1.09001 * 110.24388 * 43.95971 * 4 3 2 32 32 H 1.09001 * 110.24473 * 281.96114 * 4 3 2 33 33 H 1.08996 * 109.58590 * 113.80241 * 10 9 7 34 34 H 1.08997 * 109.58723 * 353.37374 * 10 9 7 35 35 H 1.09000 * 109.49383 * 185.41284 * 11 10 9 36 36 H 1.08997 * 109.49517 * 65.32142 * 11 10 9 37 37 H 1.09001 * 109.45667 * 301.35745 * 12 11 10 38 38 H 0.96996 * 119.99944 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.49806 * 58.58464 * 21 12 11 40 40 H 1.08994 * 109.49601 * 178.68291 * 21 12 11 41 41 H 1.09004 * 109.58802 * 246.20228 * 22 9 7 42 42 H 1.08999 * 109.58865 * 6.62580 * 22 9 7 43 43 H 1.08998 * 110.49139 * 93.87901 * 23 5 4 44 44 H 1.09003 * 110.48615 * 216.52002 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1619 -1.2117 5 6 2.3524 3.6346 -0.7489 6 1 1.3778 4.1131 -0.8452 7 6 3.4032 4.3989 -1.5123 8 8 4.2391 3.8016 -2.1568 9 7 3.4139 5.7462 -1.4790 10 6 2.3460 6.4865 -0.7931 11 6 1.7502 7.5078 -1.7672 12 6 2.8701 8.3905 -2.3229 13 6 2.2831 9.4185 -3.2556 14 1 1.2182 9.4404 -3.4338 15 6 3.1056 10.3317 -3.8806 16 7 4.4017 10.3091 -3.6585 17 14 2.3780 11.6063 -5.0360 18 1 1.4049 12.4483 -4.2948 19 1 3.4643 12.4637 -5.5746 20 1 1.6861 10.9207 -6.1569 21 6 3.8739 7.5236 -3.0864 22 6 4.4939 6.5025 -2.1273 23 6 2.7497 3.4824 0.7377 24 6 2.2708 2.0965 1.1098 25 8 2.1337 1.6901 2.2442 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.4935 2.0261 -1.9385 32 1 3.2503 1.8641 -1.6427 33 1 2.7585 7.0048 0.0725 34 1 1.5696 5.7929 -0.4706 35 1 1.0233 8.1288 -1.2436 36 1 1.2585 6.9845 -2.5872 37 1 3.3775 8.8943 -1.5002 38 1 4.9803 10.9513 -4.0985 39 1 3.3623 7.0001 -3.8940 40 1 4.6587 8.1558 -3.5016 41 1 5.0816 7.0220 -1.3704 42 1 5.1346 5.8195 -2.6850 43 1 3.8310 3.5561 0.8532 44 1 2.2480 4.2354 1.3457 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336629474.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:21 Heat of formation + Delta-G solvation = -94.828017 kcal Electronic energy + Delta-G solvation = -24356.669638 eV Core-core repulsion = 20886.664237 eV Total energy + Delta-G solvation = -3470.005402 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.00414 -40.62165 -38.49081 -37.37169 -35.42857 -34.85285 -32.88655 -31.94631 -30.55111 -28.79320 -28.01620 -25.48419 -24.47483 -23.94575 -23.21749 -21.26270 -20.46556 -19.71359 -18.76280 -18.22265 -17.85954 -17.09205 -16.75878 -16.50343 -16.13968 -15.92526 -15.09744 -14.93168 -14.82297 -14.68761 -14.59345 -14.44056 -14.23785 -14.02697 -13.72320 -13.42530 -13.19350 -13.02496 -12.83419 -12.77994 -12.51035 -12.45648 -12.35288 -12.12655 -11.99596 -11.87786 -11.39432 -11.19834 -10.98688 -10.81487 -10.61937 -10.37365 -9.77389 -9.53234 -8.06141 -6.19560 1.43228 1.43884 1.44423 1.51229 1.55417 1.88004 2.12994 2.45149 3.12961 3.20961 3.36085 3.59662 3.82737 3.94695 4.13234 4.23558 4.26346 4.35296 4.39460 4.48450 4.52937 4.55447 4.60023 4.64351 4.72224 4.78165 4.84306 4.93650 4.95154 4.96354 5.03218 5.21272 5.29052 5.29360 5.49791 5.53598 5.56279 5.69018 6.02093 6.02574 6.15561 6.40829 6.53047 6.92801 7.05949 7.14550 7.48800 8.96975 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032685 B = 0.003200 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.469189 B = 8748.894814 C = 8870.842003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.114 3.886 3 N -0.614 5.614 4 C 0.118 3.882 5 C -0.114 4.114 6 H 0.143 0.857 7 C 0.523 3.477 8 O -0.582 6.582 9 N -0.597 5.597 10 C 0.108 3.892 11 C -0.119 4.119 12 C 0.044 3.956 13 C -0.532 4.532 14 H 0.053 0.947 15 C 0.013 3.987 16 N -0.916 5.916 17 Si 0.947 3.053 18 H -0.271 1.271 19 H -0.288 1.288 20 H -0.274 1.274 21 C -0.112 4.112 22 C 0.120 3.880 23 C -0.134 4.134 24 C 0.516 3.484 25 O -0.574 6.574 26 H 0.040 0.960 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.003 0.997 38 H 0.259 0.741 39 H 0.023 0.977 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.104 0.896 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.243 -16.265 6.250 18.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.007 4.007 3 N -0.347 5.347 4 C -0.005 4.005 5 C -0.135 4.135 6 H 0.161 0.839 7 C 0.312 3.688 8 O -0.463 6.463 9 N -0.328 5.328 10 C -0.014 4.014 11 C -0.157 4.157 12 C 0.026 3.974 13 C -0.570 4.570 14 H 0.072 0.928 15 C -0.186 4.186 16 N -0.556 5.556 17 Si 0.774 3.226 18 H -0.196 1.196 19 H -0.214 1.214 20 H -0.200 1.200 21 C -0.151 4.151 22 C -0.002 4.002 23 C -0.174 4.174 24 C 0.305 3.695 25 O -0.454 6.454 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.120 0.880 30 H 0.089 0.911 31 H 0.126 0.874 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.134 0.866 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.021 0.979 38 H 0.069 0.931 39 H 0.042 0.958 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.122 0.878 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.749 -16.764 6.438 19.184 hybrid contribution 0.148 1.184 -0.925 1.509 sum -6.601 -15.580 5.513 17.796 Atomic orbital electron populations 1.22108 0.94613 1.03393 1.01985 1.21562 0.95261 0.80063 1.03822 1.48489 1.64680 1.14576 1.06914 1.22057 1.03769 0.87727 0.86975 1.22220 1.00301 0.96265 0.94717 0.83948 1.20499 0.85608 0.81950 0.80743 1.90659 1.42049 1.68783 1.44766 1.48224 1.25762 1.05275 1.53570 1.22067 0.89518 0.95030 0.94790 1.21892 0.98449 0.97018 0.98321 1.18618 0.92569 0.92232 0.94018 1.21594 0.93633 1.14847 1.26959 0.92845 1.25689 0.95253 0.99361 0.98250 1.69969 1.04025 1.37162 1.44401 0.85775 0.77981 0.79366 0.79499 1.19612 1.21406 1.19976 1.21759 1.00653 0.95675 0.96967 1.21556 0.89186 0.93524 0.95970 1.22285 1.04396 0.95890 0.94851 1.21063 0.75943 0.88375 0.84141 1.90699 1.55632 1.76477 1.22621 0.94052 0.91468 0.89647 0.87984 0.91078 0.87412 0.90125 0.90421 0.86636 0.90868 0.93099 0.97921 0.93143 0.95774 0.91266 0.91946 0.91207 0.87799 0.85034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 10.24 71.99 0.74 -1.32 16 2 C 0.11 1.71 6.65 86.38 0.57 2.28 16 3 N -0.61 -11.64 2.93 -817.97 -2.40 -14.04 16 4 C 0.12 2.07 6.81 86.83 0.59 2.66 16 5 C -0.11 -2.11 2.56 -10.48 -0.03 -2.14 16 6 H 0.14 1.92 6.47 -2.39 -0.02 1.90 16 7 C 0.52 14.54 6.87 87.66 0.60 15.14 16 8 O -0.58 -20.36 14.95 -3.03 -0.05 -20.41 16 9 N -0.60 -17.93 2.97 -818.88 -2.43 -20.36 16 10 C 0.11 2.71 6.32 86.36 0.55 3.25 16 11 C -0.12 -4.00 5.30 30.67 0.16 -3.83 16 12 C 0.04 2.00 2.06 -11.51 -0.02 1.97 16 13 C -0.53 -27.53 8.56 25.60 0.22 -27.31 16 14 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 15 C 0.01 0.70 5.30 84.65 0.45 1.14 16 16 N -0.92 -50.99 11.32 21.45 0.24 -50.75 16 17 Si 0.95 42.20 29.54 68.60 2.03 44.22 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 19 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 C -0.11 -5.01 5.15 30.67 0.16 -4.85 16 22 C 0.12 4.46 6.44 86.36 0.56 5.01 16 23 C -0.13 -2.51 6.41 30.59 0.20 -2.32 16 24 C 0.52 12.12 8.02 87.90 0.71 12.83 16 25 O -0.57 -17.89 17.59 -3.03 -0.05 -17.94 16 26 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.24 7.92 -2.38 -0.02 1.22 16 31 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 1.73 6.85 -2.39 -0.02 1.71 16 33 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.12 1.92 5.53 -2.39 -0.01 1.91 16 35 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 38 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 39 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 3.58 6.04 -2.39 -0.01 3.57 16 41 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.07 2.68 7.00 -2.39 -0.02 2.66 16 43 H 0.10 2.12 7.89 -2.39 -0.02 2.10 16 44 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -68.11 348.77 3.76 -64.35 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 0.98 Total: 12.41 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 5.45 Total: 2.53 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -4.59 Total: -85.15 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: -0.10 Total: -38.35 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Total: -68.11 3.76 -64.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336629474.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.482 kcal (2) G-P(sol) polarization free energy of solvation -68.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds