Wall clock time and date at job start Tue Mar 31 2020 06:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.52757 * 2 1 4 4 C 1.53048 * 109.49654 * 239.92308 * 2 1 3 5 5 C 1.53042 * 109.53621 * 178.68465 * 4 2 1 6 6 C 1.52758 * 109.38759 * 61.24115 * 5 4 2 7 7 N 1.46925 * 109.00394 * 305.58852 * 6 5 4 8 8 C 1.34779 * 120.62866 * 233.58393 * 7 6 5 9 9 O 1.21352 * 120.00315 * 171.02913 * 8 7 6 10 10 C 1.49451 * 119.99688 * 351.30377 * 8 7 6 11 11 O 1.21345 * 120.00193 * 353.27417 * 10 8 7 12 12 N 1.34780 * 120.00002 * 173.27559 * 10 8 7 13 13 C 1.46503 * 119.99999 * 184.36251 * 12 10 8 14 14 C 1.53000 * 109.46968 * 175.11874 * 13 12 10 15 15 C 1.50703 * 115.55226 * 65.11013 * 14 13 12 16 16 H 1.08001 * 119.99946 * 271.29523 * 15 14 13 17 17 C 1.37878 * 119.99928 * 91.29036 * 15 14 13 18 18 N 1.31522 * 119.99913 * 3.91844 * 17 15 14 19 19 Si 1.86794 * 120.00177 * 183.91167 * 17 15 14 20 20 H 1.48497 * 109.47231 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46944 * 120.00322 * 19 17 15 22 22 H 1.48494 * 109.47391 * 240.00147 * 19 17 15 23 23 C 1.53006 * 117.49792 * 279.44417 * 14 13 12 24 24 C 1.53002 * 117.49819 * 210.78353 * 14 13 12 25 25 C 1.46923 * 118.74327 * 53.30655 * 7 6 5 26 26 H 1.09009 * 109.46569 * 299.91670 * 1 2 3 27 27 H 1.08997 * 109.47369 * 59.91483 * 1 2 3 28 28 H 1.09001 * 109.47360 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.45564 * 298.70200 * 4 2 1 30 30 H 1.09002 * 109.45640 * 58.66083 * 4 2 1 31 31 H 1.09004 * 109.49259 * 181.31896 * 5 4 2 32 32 H 1.08997 * 109.49903 * 301.40904 * 5 4 2 33 33 H 1.08993 * 109.51329 * 185.70474 * 6 5 4 34 34 H 1.09002 * 109.43522 * 65.41712 * 6 5 4 35 35 H 0.97000 * 120.00084 * 4.35498 * 12 10 8 36 36 H 1.08997 * 109.47026 * 295.11518 * 13 12 10 37 37 H 1.08999 * 109.47020 * 55.11861 * 13 12 10 38 38 H 0.96990 * 119.99976 * 185.00341 * 18 17 15 39 39 H 1.08993 * 117.49988 * 359.97438 * 23 14 13 40 40 H 1.08998 * 117.49699 * 145.02588 * 23 14 13 41 41 H 1.08997 * 117.49692 * 214.97926 * 24 14 13 42 42 H 1.08994 * 117.49899 * 359.97438 * 24 14 13 43 43 H 1.09003 * 109.58572 * 66.43456 * 25 7 6 44 44 H 1.09001 * 109.58725 * 186.71181 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0407 -0.7230 -1.2485 5 6 3.5708 -0.6950 -1.2661 6 6 4.1055 -1.4216 -0.0334 7 7 3.5046 -0.8292 1.1694 8 6 4.2812 -0.3857 2.1777 9 8 3.7894 0.2462 3.0896 10 6 5.7490 -0.6669 2.1697 11 8 6.2225 -1.3959 1.3230 12 7 6.5468 -0.1109 3.1030 13 6 7.9970 -0.3088 3.0390 14 6 8.6734 0.5199 4.1330 15 6 8.3540 0.1124 5.5483 16 1 7.4996 0.5384 6.0531 17 6 9.1527 -0.8043 6.1986 18 7 10.2363 -1.2650 5.6127 19 14 8.6958 -1.3917 7.9119 20 1 7.4402 -0.7272 8.3446 21 1 8.4958 -2.8631 7.8937 22 1 9.7878 -1.0523 8.8592 23 6 8.8903 2.0094 3.8586 24 6 10.0814 1.0479 3.8504 25 6 2.0413 -0.7239 1.2495 26 1 -0.3633 0.5126 0.8908 27 1 -0.3634 0.5151 -0.8892 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6966 -1.7572 -1.2354 30 1 1.6580 -0.2243 -2.1390 31 1 3.9333 -1.1896 -2.1673 32 1 3.9159 0.3389 -1.2542 33 1 5.1895 -1.3161 0.0098 34 1 3.8412 -2.4775 -0.0917 35 1 6.1607 0.4203 3.8169 36 1 8.2266 -1.3638 3.1881 37 1 8.3643 0.0087 2.0632 38 1 10.7585 -1.9627 6.0384 39 1 8.5515 2.3989 2.8986 40 1 8.8025 2.6945 4.7018 41 1 10.7765 1.1008 4.6883 42 1 10.5259 0.8045 2.8854 43 1 1.6052 -1.7217 1.2979 44 1 1.7638 -0.1602 2.1402 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338912921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:43 Heat of formation + Delta-G solvation = -47.014453 kcal Electronic energy + Delta-G solvation = -24180.971168 eV Core-core repulsion = 20713.039118 eV Total energy + Delta-G solvation = -3467.932050 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.70564 -38.72092 -37.58172 -36.78702 -34.18136 -33.17207 -31.99668 -31.94668 -27.67974 -26.83336 -25.87420 -25.22319 -22.64630 -22.39506 -21.14992 -20.31329 -19.76247 -19.08075 -17.35708 -16.77898 -16.11370 -15.81660 -15.33813 -15.23426 -14.73777 -14.60646 -14.38309 -14.14955 -13.91077 -13.56297 -13.29362 -13.00508 -12.80144 -12.72608 -12.33173 -12.02457 -11.89248 -11.59619 -11.38121 -11.21879 -11.04520 -11.02414 -10.93968 -10.64909 -10.55707 -10.51731 -10.23446 -9.56022 -9.14337 -8.94652 -8.72261 -8.52808 -8.37504 -8.18613 -6.10477 -4.19823 1.73596 2.59564 3.25605 3.34752 3.38831 3.51493 3.82920 4.35589 4.47198 4.57837 4.67334 4.80438 4.91258 5.15222 5.16508 5.25467 5.30900 5.34285 5.41132 5.50815 5.54745 5.62973 5.76760 5.84627 5.89646 5.93712 5.94980 6.05336 6.19513 6.27951 6.36121 6.39301 6.47998 6.65947 6.74823 7.04227 7.09753 7.18464 7.31741 7.54087 7.76271 7.79659 8.11748 8.30276 8.47715 8.83016 9.48121 10.96747 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023450 B = 0.003587 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.730356 B = 7804.026720 C = 8262.972843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 H 0.075 0.925 4 C -0.116 4.116 5 C -0.136 4.136 6 C 0.068 3.932 7 N -0.587 5.587 8 C 0.509 3.491 9 O -0.522 6.522 10 C 0.497 3.503 11 O -0.531 6.531 12 N -0.664 5.664 13 C 0.159 3.841 14 C 0.016 3.984 15 C -0.499 4.499 16 H 0.062 0.938 17 C 0.073 3.927 18 N -0.876 5.876 19 Si 0.889 3.111 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.284 1.284 23 C -0.212 4.212 24 C -0.133 4.133 25 C 0.112 3.888 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.145 0.855 34 H 0.065 0.935 35 H 0.415 0.585 36 H 0.073 0.927 37 H 0.048 0.952 38 H 0.261 0.739 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.521 0.996 -12.834 19.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.126 4.126 3 H 0.093 0.907 4 C -0.154 4.154 5 C -0.174 4.174 6 C -0.053 4.053 7 N -0.321 5.321 8 C 0.292 3.708 9 O -0.398 6.398 10 C 0.277 3.723 11 O -0.412 6.412 12 N -0.312 5.312 13 C 0.036 3.964 14 C 0.016 3.984 15 C -0.536 4.536 16 H 0.080 0.920 17 C -0.131 4.131 18 N -0.512 5.512 19 Si 0.717 3.283 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.210 1.210 23 C -0.249 4.249 24 C -0.171 4.171 25 C -0.010 4.010 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.162 0.838 34 H 0.083 0.917 35 H 0.251 0.749 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.110 0.890 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.209 0.758 -12.845 19.169 hybrid contribution -0.438 -0.289 1.165 1.278 sum -14.647 0.469 -11.679 18.739 Atomic orbital electron populations 1.21762 0.94374 1.02022 1.02062 1.21499 0.95891 1.00253 0.94952 0.90689 1.21624 0.95749 1.00670 0.97311 1.21888 0.95596 1.01567 0.98361 1.22793 1.03895 0.96409 0.82200 1.47907 1.06338 1.59805 1.18044 1.20417 0.88214 0.79606 0.82532 1.90737 1.75164 1.38023 1.35862 1.19964 0.87021 0.82042 0.83248 1.90429 1.75678 1.37543 1.37549 1.45946 1.08612 1.49453 1.27222 1.21258 0.76145 1.01559 0.97420 1.19052 0.96048 0.89250 0.94091 1.20425 1.11922 1.25695 0.95601 0.92000 1.24983 0.94053 0.96320 0.97698 1.70014 1.14592 1.27336 1.39244 0.86578 0.78589 0.78681 0.84467 1.19577 1.20921 1.20998 1.23071 1.06664 0.95109 1.00052 1.22452 0.91842 1.02414 1.00391 1.21757 0.79130 1.00919 0.99237 0.92337 0.92331 0.92482 0.91780 0.91828 0.90552 0.91709 0.83843 0.91687 0.74884 0.90855 0.93372 0.92920 0.91762 0.90221 0.88988 0.91831 0.91281 0.88858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.20 37.15 0.34 -0.69 16 2 C -0.11 -0.97 2.87 -90.50 -0.26 -1.23 16 3 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 4 C -0.12 -0.96 5.17 -26.68 -0.14 -1.10 16 5 C -0.14 -1.31 6.06 -26.83 -0.16 -1.47 16 6 C 0.07 0.84 5.95 -3.93 -0.02 0.81 16 7 N -0.59 -8.10 2.98 -173.54 -0.52 -8.62 16 8 C 0.51 8.64 7.73 -11.58 -0.09 8.55 16 9 O -0.52 -9.83 15.93 5.49 0.09 -9.74 16 10 C 0.50 9.21 7.74 -11.58 -0.09 9.12 16 11 O -0.53 -10.23 13.19 5.50 0.07 -10.16 16 12 N -0.66 -13.11 5.47 -60.73 -0.33 -13.44 16 13 C 0.16 3.44 5.51 -4.04 -0.02 3.41 16 14 C 0.02 0.38 1.58 -155.65 -0.25 0.13 16 15 C -0.50 -12.90 8.63 -34.44 -0.30 -13.20 16 16 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 17 C 0.07 1.94 5.41 -17.82 -0.10 1.84 16 18 N -0.88 -23.92 12.14 55.43 0.67 -23.25 16 19 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C -0.21 -4.41 9.96 -26.69 -0.27 -4.68 16 24 C -0.13 -3.00 8.91 -26.69 -0.24 -3.24 16 25 C 0.11 1.26 5.73 -3.71 -0.02 1.24 16 26 H 0.06 0.42 8.14 -51.92 -0.42 -0.01 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.14 2.09 4.32 -54.77 -0.24 1.85 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.41 8.22 7.81 -40.82 -0.32 7.90 16 36 H 0.07 1.77 8.14 -51.93 -0.42 1.34 16 37 H 0.05 0.99 8.09 -51.93 -0.42 0.57 16 38 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 41 H 0.09 2.26 7.82 -51.93 -0.41 1.86 16 42 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.09 1.16 7.00 -51.93 -0.36 0.80 16 LS Contribution 356.18 15.07 5.37 5.37 Total: -1.00 -28.08 356.18 -8.49 -36.57 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -7.21 Total: 8.06 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -1.61 Total: -0.49 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: -0.18 Total: -45.30 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: 0.16 Total: -19.90 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.08 -8.49 -36.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338912921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.444 kcal (2) G-P(sol) polarization free energy of solvation -28.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds