Wall clock time and date at job start Tue Mar 31 2020 06:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.52757 * 2 1 4 4 C 1.53048 * 109.49654 * 239.92308 * 2 1 3 5 5 C 1.53042 * 109.53621 * 178.68465 * 4 2 1 6 6 C 1.52758 * 109.38759 * 61.24115 * 5 4 2 7 7 N 1.46925 * 109.00394 * 305.58852 * 6 5 4 8 8 C 1.34779 * 120.62866 * 233.58393 * 7 6 5 9 9 O 1.21352 * 120.00315 * 171.02913 * 8 7 6 10 10 C 1.49451 * 119.99688 * 351.30377 * 8 7 6 11 11 O 1.21345 * 120.00193 * 353.27417 * 10 8 7 12 12 N 1.34780 * 120.00002 * 173.27559 * 10 8 7 13 13 C 1.46503 * 119.99999 * 184.36251 * 12 10 8 14 14 C 1.53000 * 109.46968 * 175.11874 * 13 12 10 15 15 C 1.50703 * 115.55226 * 65.11013 * 14 13 12 16 16 H 1.08001 * 119.99946 * 271.29523 * 15 14 13 17 17 C 1.37878 * 119.99928 * 91.29036 * 15 14 13 18 18 N 1.31522 * 119.99913 * 3.91844 * 17 15 14 19 19 Si 1.86794 * 120.00177 * 183.91167 * 17 15 14 20 20 H 1.48497 * 109.47231 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46944 * 120.00322 * 19 17 15 22 22 H 1.48494 * 109.47391 * 240.00147 * 19 17 15 23 23 C 1.53006 * 117.49792 * 279.44417 * 14 13 12 24 24 C 1.53002 * 117.49819 * 210.78353 * 14 13 12 25 25 C 1.46923 * 118.74327 * 53.30655 * 7 6 5 26 26 H 1.09009 * 109.46569 * 299.91670 * 1 2 3 27 27 H 1.08997 * 109.47369 * 59.91483 * 1 2 3 28 28 H 1.09001 * 109.47360 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.45564 * 298.70200 * 4 2 1 30 30 H 1.09002 * 109.45640 * 58.66083 * 4 2 1 31 31 H 1.09004 * 109.49259 * 181.31896 * 5 4 2 32 32 H 1.08997 * 109.49903 * 301.40904 * 5 4 2 33 33 H 1.08993 * 109.51329 * 185.70474 * 6 5 4 34 34 H 1.09002 * 109.43522 * 65.41712 * 6 5 4 35 35 H 0.97000 * 120.00084 * 4.35498 * 12 10 8 36 36 H 1.08997 * 109.47026 * 295.11518 * 13 12 10 37 37 H 1.08999 * 109.47020 * 55.11861 * 13 12 10 38 38 H 0.96990 * 119.99976 * 185.00341 * 18 17 15 39 39 H 1.08993 * 117.49988 * 359.97438 * 23 14 13 40 40 H 1.08998 * 117.49699 * 145.02588 * 23 14 13 41 41 H 1.08997 * 117.49692 * 214.97926 * 24 14 13 42 42 H 1.08994 * 117.49899 * 359.97438 * 24 14 13 43 43 H 1.09003 * 109.58572 * 66.43456 * 25 7 6 44 44 H 1.09001 * 109.58725 * 186.71181 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0407 -0.7230 -1.2485 5 6 3.5708 -0.6950 -1.2661 6 6 4.1055 -1.4216 -0.0334 7 7 3.5046 -0.8292 1.1694 8 6 4.2812 -0.3857 2.1777 9 8 3.7894 0.2462 3.0896 10 6 5.7490 -0.6669 2.1697 11 8 6.2225 -1.3959 1.3230 12 7 6.5468 -0.1109 3.1030 13 6 7.9970 -0.3088 3.0390 14 6 8.6734 0.5199 4.1330 15 6 8.3540 0.1124 5.5483 16 1 7.4996 0.5384 6.0531 17 6 9.1527 -0.8043 6.1986 18 7 10.2363 -1.2650 5.6127 19 14 8.6958 -1.3917 7.9119 20 1 7.4402 -0.7272 8.3446 21 1 8.4958 -2.8631 7.8937 22 1 9.7878 -1.0523 8.8592 23 6 8.8903 2.0094 3.8586 24 6 10.0814 1.0479 3.8504 25 6 2.0413 -0.7239 1.2495 26 1 -0.3633 0.5126 0.8908 27 1 -0.3634 0.5151 -0.8892 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6966 -1.7572 -1.2354 30 1 1.6580 -0.2243 -2.1390 31 1 3.9333 -1.1896 -2.1673 32 1 3.9159 0.3389 -1.2542 33 1 5.1895 -1.3161 0.0098 34 1 3.8412 -2.4775 -0.0917 35 1 6.1607 0.4203 3.8169 36 1 8.2266 -1.3638 3.1881 37 1 8.3643 0.0087 2.0632 38 1 10.7585 -1.9627 6.0384 39 1 8.5515 2.3989 2.8986 40 1 8.8025 2.6945 4.7018 41 1 10.7765 1.1008 4.6883 42 1 10.5259 0.8045 2.8854 43 1 1.6052 -1.7217 1.2979 44 1 1.7638 -0.1602 2.1402 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338912921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:43 Heat of formation + Delta-G solvation = -63.464356 kcal Electronic energy + Delta-G solvation = -24181.684489 eV Core-core repulsion = 20713.039118 eV Total energy + Delta-G solvation = -3468.645371 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.00747 -40.03227 -38.76247 -38.51618 -35.46369 -34.46400 -33.93125 -32.85203 -29.05956 -27.96172 -27.38309 -26.68770 -23.93243 -23.23679 -22.88794 -21.53061 -21.21548 -20.47243 -18.74732 -18.14426 -17.87576 -17.16217 -16.68699 -16.66858 -16.23775 -15.88709 -15.66791 -15.22815 -15.18921 -14.80977 -14.50786 -14.42725 -14.06828 -13.79578 -13.59876 -13.43914 -13.03968 -12.96558 -12.85152 -12.75630 -12.44339 -12.36732 -12.01806 -12.00773 -11.81637 -11.66349 -11.37472 -11.31445 -11.02389 -10.43625 -10.40638 -10.02791 -9.97110 -9.77753 -8.12256 -6.25419 0.32666 1.31415 1.39098 1.43542 1.52920 2.09811 2.41138 2.51711 3.15091 3.29307 3.57208 3.75863 3.84689 3.93411 4.09524 4.18867 4.31832 4.41392 4.51611 4.59074 4.60590 4.65282 4.68309 4.78279 4.83778 4.88323 4.90259 5.00148 5.03140 5.07423 5.16985 5.23094 5.29932 5.29972 5.36550 5.47752 5.52824 5.56406 5.71814 5.75832 5.98443 6.31499 6.35587 6.71671 6.81785 6.96892 7.44221 8.94538 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023450 B = 0.003587 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.730356 B = 7804.026720 C = 8262.972843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 H 0.061 0.939 4 C -0.112 4.112 5 C -0.131 4.131 6 C 0.065 3.935 7 N -0.577 5.577 8 C 0.508 3.492 9 O -0.548 6.548 10 C 0.497 3.503 11 O -0.539 6.539 12 N -0.668 5.668 13 C 0.175 3.825 14 C -0.006 4.006 15 C -0.508 4.508 16 H 0.056 0.944 17 C 0.029 3.971 18 N -0.902 5.902 19 Si 0.944 3.056 20 H -0.269 1.269 21 H -0.284 1.284 22 H -0.282 1.282 23 C -0.184 4.184 24 C -0.138 4.138 25 C 0.106 3.894 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.054 0.946 33 H 0.121 0.879 34 H 0.078 0.922 35 H 0.414 0.586 36 H 0.042 0.958 37 H 0.059 0.941 38 H 0.260 0.740 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.088 0.912 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.486 1.024 -14.319 21.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.121 4.121 3 H 0.080 0.920 4 C -0.149 4.149 5 C -0.169 4.169 6 C -0.056 4.056 7 N -0.309 5.309 8 C 0.291 3.709 9 O -0.426 6.426 10 C 0.279 3.721 11 O -0.420 6.420 12 N -0.318 5.318 13 C 0.052 3.948 14 C -0.007 4.007 15 C -0.545 4.545 16 H 0.074 0.926 17 C -0.172 4.172 18 N -0.539 5.539 19 Si 0.771 3.229 20 H -0.193 1.193 21 H -0.210 1.210 22 H -0.208 1.208 23 C -0.222 4.222 24 C -0.176 4.176 25 C -0.015 4.015 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.073 0.927 33 H 0.138 0.862 34 H 0.096 0.904 35 H 0.250 0.750 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.108 0.892 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.106 0.894 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.203 0.778 -14.367 21.670 hybrid contribution 0.136 -0.316 1.553 1.590 sum -16.068 0.462 -12.815 20.557 Atomic orbital electron populations 1.21732 0.92560 1.02882 1.02574 1.21472 0.97291 0.99208 0.94164 0.92049 1.21623 0.94411 1.01465 0.97404 1.21862 0.96767 1.00743 0.97507 1.22824 1.02627 0.97520 0.82650 1.48073 1.07383 1.58107 1.17381 1.20088 0.87482 0.80152 0.83226 1.90725 1.75211 1.39613 1.37060 1.20307 0.87859 0.81426 0.82557 1.90455 1.76299 1.37614 1.37630 1.45864 1.07959 1.50136 1.27796 1.20875 0.77324 0.99303 0.97317 1.19097 0.96836 0.91273 0.93475 1.20682 1.11424 1.25454 0.96966 0.92624 1.25617 0.94184 0.96748 1.00674 1.70106 1.15402 1.27908 1.40526 0.85717 0.78287 0.77958 0.80961 1.19294 1.21022 1.20765 1.23047 1.04293 0.93596 1.01219 1.22355 0.91542 1.03674 1.00063 1.22022 0.77289 1.02145 1.00046 0.92616 0.91106 0.91433 0.90609 0.90047 0.88618 0.92673 0.86151 0.90394 0.74974 0.94006 0.92285 0.93074 0.89227 0.90214 0.91489 0.90539 0.89426 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.20 71.98 0.66 -0.94 16 2 C -0.10 -1.62 2.87 -10.72 -0.03 -1.65 16 3 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 4 C -0.11 -1.48 5.17 30.62 0.16 -1.32 16 5 C -0.13 -2.19 6.06 30.53 0.19 -2.01 16 6 C 0.06 1.48 5.95 86.22 0.51 1.99 16 7 N -0.58 -15.32 2.98 -821.33 -2.45 -17.77 16 8 C 0.51 17.18 7.73 87.27 0.67 17.85 16 9 O -0.55 -20.73 15.93 -3.25 -0.05 -20.79 16 10 C 0.50 18.52 7.74 87.27 0.68 19.20 16 11 O -0.54 -20.81 13.19 -3.23 -0.04 -20.86 16 12 N -0.67 -26.65 5.47 -464.41 -2.54 -29.19 16 13 C 0.18 7.66 5.51 86.38 0.48 8.13 16 14 C -0.01 -0.28 1.58 -52.92 -0.08 -0.37 16 15 C -0.51 -26.53 8.63 25.60 0.22 -26.31 16 16 H 0.06 2.91 7.82 -2.91 -0.02 2.89 16 17 C 0.03 1.54 5.41 84.65 0.46 2.00 16 18 N -0.90 -50.15 12.14 21.45 0.26 -49.89 16 19 Si 0.94 43.00 29.54 68.60 2.03 45.03 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 C -0.18 -7.48 9.96 30.62 0.30 -7.18 16 24 C -0.14 -6.25 8.91 30.62 0.27 -5.97 16 25 C 0.11 2.22 5.73 86.36 0.49 2.72 16 26 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 31 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.12 3.43 4.32 -47.26 -0.20 3.22 16 34 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.41 16.60 7.81 -92.71 -0.72 15.88 16 36 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.06 2.42 8.09 -2.39 -0.02 2.40 16 38 H 0.26 13.90 8.32 -92.72 -0.77 13.13 16 39 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 40 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 41 H 0.07 3.35 7.82 -2.39 -0.02 3.33 16 42 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 43 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.08 1.91 7.00 -2.39 -0.02 1.90 16 Total: -1.00 -60.48 356.18 2.26 -58.22 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: 0.07 Total: 29.09 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 4.98 Total: 6.15 kcal Atomic # 7 Polarization: -92.12 SS G_CDS: -4.73 Total: -96.85 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: -0.09 Total: -41.64 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -60.48 2.26 -58.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338912921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.241 kcal (2) G-P(sol) polarization free energy of solvation -60.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds