Wall clock time and date at job start Tue Mar 31 2020 07:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47534 * 2 1 4 4 O 1.42911 * 109.47257 * 239.99994 * 2 1 3 5 5 C 1.42893 * 113.99615 * 99.23855 * 4 2 1 6 6 C 1.54249 * 108.89655 * 265.42435 * 5 4 2 7 7 C 1.50557 * 108.48188 * 159.18202 * 6 5 4 8 8 C 1.54066 * 112.41552 * 94.27070 * 7 6 5 9 9 C 1.54072 * 112.81390 * 318.27734 * 8 7 6 10 10 C 1.50472 * 112.49286 * 318.28405 * 9 8 7 11 11 C 1.45544 * 108.89525 * 142.63494 * 5 4 2 12 12 C 1.50703 * 109.47271 * 120.00416 * 2 1 3 13 13 O 1.21289 * 120.00193 * 101.10693 * 12 2 1 14 14 N 1.34782 * 119.99700 * 281.10558 * 12 2 1 15 15 C 1.37094 * 120.00158 * 184.17692 * 14 12 2 16 16 H 1.07997 * 119.99563 * 335.76286 * 15 14 12 17 17 C 1.38950 * 120.00089 * 155.76481 * 15 14 12 18 18 N 1.31407 * 120.00226 * 345.61551 * 17 15 14 19 19 Si 1.86801 * 119.99786 * 165.61202 * 17 15 14 20 20 H 1.48501 * 109.47018 * 90.00054 * 19 17 15 21 21 H 1.48492 * 109.47159 * 209.99678 * 19 17 15 22 22 H 1.48497 * 109.47274 * 330.00185 * 19 17 15 23 23 C 1.46499 * 119.99786 * 4.17245 * 14 12 2 24 24 C 1.47197 * 109.47432 * 275.98988 * 23 14 12 25 25 N 3.94000 * 116.43932 * 30.99313 * 2 1 3 26 26 H 1.08993 * 109.46860 * 294.19221 * 1 2 3 27 27 H 1.09000 * 109.47219 * 54.19625 * 1 2 3 28 28 H 1.09000 * 109.46987 * 174.19635 * 1 2 3 29 29 H 1.09002 * 108.87847 * 24.03019 * 5 4 2 30 30 H 1.09001 * 109.62998 * 278.97875 * 6 5 4 31 31 H 1.08998 * 109.62615 * 39.56052 * 6 5 4 32 32 H 1.08999 * 108.92610 * 333.50780 * 7 6 5 33 33 H 1.09006 * 108.91198 * 215.01766 * 7 6 5 34 34 H 1.08998 * 108.81268 * 197.41801 * 8 7 6 35 35 H 1.09001 * 108.73055 * 79.07359 * 8 7 6 36 36 H 1.09001 * 108.87256 * 197.51312 * 9 8 7 37 37 H 1.08997 * 108.87893 * 79.06426 * 9 8 7 38 38 H 1.09000 * 109.63213 * 334.44551 * 10 9 8 39 39 H 1.09008 * 109.62753 * 213.86579 * 10 9 8 40 40 H 1.08994 * 108.89326 * 303.44368 * 11 5 4 41 41 H 1.09003 * 108.89254 * 62.02879 * 11 5 4 42 42 H 0.96993 * 120.00141 * 180.02562 * 18 17 15 43 43 H 1.09003 * 109.47453 * 35.99015 * 23 14 12 44 44 H 1.09000 * 109.47244 * 155.98421 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1669 5 6 2.3977 0.2032 -2.2251 6 6 1.2091 0.3808 -3.1920 7 6 1.4191 1.6470 -3.9789 8 6 2.1093 1.3900 -5.3322 9 6 3.2573 0.3673 -5.2326 10 6 4.1031 0.5690 -4.0045 11 6 3.5704 -0.3500 -2.8862 12 6 2.0324 -0.7105 1.2304 13 8 2.4253 -1.8553 1.1518 14 7 2.0450 -0.0738 2.4183 15 6 2.5808 -0.6889 3.5201 16 1 2.6314 -1.7667 3.5656 17 6 3.0588 0.0744 4.5783 18 7 3.2619 1.3630 4.4199 19 14 3.4124 -0.7313 6.2261 20 1 4.8205 -1.2021 6.2547 21 1 3.1981 0.2549 7.3154 22 1 2.5000 -1.8870 6.4180 23 6 1.4863 1.2757 2.5319 24 6 2.5011 2.2626 2.1282 25 7 3.2843 3.0242 1.8166 26 1 -0.3633 0.4211 0.9374 27 1 -0.3633 0.6012 -0.8335 28 1 -0.3633 -1.0224 -0.1039 29 1 2.6562 1.1737 -1.8015 30 1 1.1592 -0.4703 -3.8711 31 1 0.2822 0.4538 -2.6232 32 1 2.0347 2.3294 -3.3930 33 1 0.4515 2.1151 -4.1599 34 1 2.5093 2.3320 -5.7072 35 1 1.3672 1.0178 -6.0385 36 1 3.8897 0.4600 -6.1155 37 1 2.8339 -0.6368 -5.2082 38 1 4.0414 1.6090 -3.6842 39 1 5.1389 0.3123 -4.2271 40 1 4.3565 -0.4971 -2.1457 41 1 3.3088 -1.3155 -3.3194 42 1 3.5958 1.8957 5.1584 43 1 0.6151 1.3642 1.8829 44 1 1.1902 1.4606 3.5645 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346775342.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:52 Heat of formation + Delta-G solvation = -57.166659 kcal Electronic energy + Delta-G solvation = -24909.652318 eV Core-core repulsion = 21441.280036 eV Total energy + Delta-G solvation = -3468.372282 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.79747 -38.73077 -36.53261 -35.65708 -34.26688 -32.51718 -32.09583 -31.44217 -30.03954 -27.41775 -25.41519 -24.79369 -24.31374 -22.88805 -20.69434 -19.40353 -19.29065 -17.92476 -17.05621 -16.44676 -15.93748 -15.78063 -15.09259 -14.91102 -14.52351 -14.17455 -13.98309 -13.51854 -13.33176 -13.11616 -13.06801 -12.96266 -12.52378 -12.17822 -12.13246 -11.94284 -11.81458 -11.63037 -11.44892 -11.28878 -11.15289 -11.03224 -10.69785 -10.62107 -10.53513 -10.42743 -10.40707 -10.38047 -10.27848 -10.24304 -9.41988 -9.24089 -8.37585 -7.98758 -6.47604 -4.05516 3.11262 3.21452 3.25855 3.46552 3.73718 3.85897 3.96060 4.15403 4.59238 4.70849 4.78760 4.88869 4.93376 5.04559 5.12106 5.16058 5.20962 5.28795 5.32869 5.35273 5.45208 5.51147 5.62990 5.68544 5.77275 5.82662 5.89511 6.01258 6.01400 6.07346 6.11139 6.11654 6.14873 6.23990 6.34303 6.38175 6.42477 6.47410 6.50353 7.46667 7.50455 7.96544 8.30151 8.73885 9.00449 9.18242 9.73545 10.58512 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024731 B = 0.004102 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.901578 B = 6824.429121 C = 6989.101021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.074 3.926 3 H 0.070 0.930 4 O -0.351 6.351 5 C 0.093 3.907 6 C -0.137 4.137 7 C -0.120 4.120 8 C -0.116 4.116 9 C -0.120 4.120 10 C -0.112 4.112 11 C -0.124 4.124 12 C 0.462 3.538 13 O -0.550 6.550 14 N -0.445 5.445 15 C -0.310 4.310 16 H 0.106 0.894 17 C 0.032 3.968 18 N -0.885 5.885 19 Si 0.931 3.069 20 H -0.278 1.278 21 H -0.282 1.282 22 H -0.268 1.268 23 C 0.217 3.783 24 C 0.246 3.754 25 N -0.473 5.473 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.273 0.727 43 H 0.085 0.915 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.653 2.412 -13.330 15.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.013 3.987 3 H 0.088 0.912 4 O -0.269 6.269 5 C 0.035 3.965 6 C -0.175 4.175 7 C -0.157 4.157 8 C -0.153 4.153 9 C -0.158 4.158 10 C -0.150 4.150 11 C -0.162 4.162 12 C 0.249 3.751 13 O -0.429 6.429 14 N -0.168 5.168 15 C -0.437 4.437 16 H 0.124 0.876 17 C -0.171 4.171 18 N -0.524 5.524 19 Si 0.757 3.243 20 H -0.204 1.204 21 H -0.208 1.208 22 H -0.192 1.192 23 C 0.089 3.911 24 C -0.072 4.072 25 N -0.154 5.154 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.102 0.898 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.215 2.874 -13.712 14.949 hybrid contribution 0.065 -0.099 1.142 1.148 sum -5.150 2.776 -12.570 13.865 Atomic orbital electron populations 1.22356 0.94466 1.03518 1.02349 1.22094 0.94646 0.95551 0.86452 0.91203 1.88062 1.83791 1.32400 1.22639 1.21147 0.93887 0.93294 0.88175 1.21937 0.98768 0.98298 0.98488 1.21319 1.00387 0.97799 0.96213 1.21913 0.97305 0.99033 0.97082 1.21377 0.96749 0.99764 0.97883 1.21244 0.98942 1.00034 0.94750 1.20584 0.97425 0.99825 0.98357 1.20137 0.83278 0.88316 0.83401 1.90553 1.49935 1.17856 1.84593 1.43520 1.53355 1.12247 1.07681 1.19680 1.37920 0.93400 0.92685 0.87640 1.25332 0.95638 0.95603 1.00553 1.69703 1.43938 1.06083 1.32698 0.85845 0.79026 0.78795 0.80588 1.20393 1.20793 1.19232 1.18885 0.88939 0.79344 1.03923 1.29278 0.94313 0.93271 0.90359 1.80885 1.09288 1.12008 1.13205 0.90782 0.91955 0.91009 0.92711 0.91041 0.91056 0.92055 0.92137 0.92457 0.92415 0.92488 0.91841 0.91586 0.91519 0.91229 0.91116 0.91614 0.89786 0.85587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.45 9.01 37.16 0.33 -2.11 16 2 C 0.07 1.38 2.39 -27.88 -0.07 1.31 16 3 H 0.07 1.27 5.52 -51.93 -0.29 0.98 16 4 O -0.35 -6.61 9.12 -54.39 -0.50 -7.11 16 5 C 0.09 1.38 2.14 -29.59 -0.06 1.32 16 6 C -0.14 -1.64 5.24 -27.30 -0.14 -1.78 16 7 C -0.12 -1.21 5.32 -27.40 -0.15 -1.36 16 8 C -0.12 -1.05 5.85 -25.61 -0.15 -1.20 16 9 C -0.12 -1.15 5.31 -27.43 -0.15 -1.30 16 10 C -0.11 -1.25 5.61 -27.35 -0.15 -1.40 16 11 C -0.12 -1.74 4.82 -29.60 -0.14 -1.88 16 12 C 0.46 10.88 6.84 -10.98 -0.08 10.80 16 13 O -0.55 -15.18 16.30 -13.61 -0.22 -15.41 16 14 N -0.45 -10.48 2.59 -117.93 -0.31 -10.78 16 15 C -0.31 -8.02 9.26 -14.93 -0.14 -8.16 16 16 H 0.11 2.88 7.42 -52.49 -0.39 2.49 16 17 C 0.03 0.79 4.99 -17.47 -0.09 0.70 16 18 N -0.88 -22.39 9.31 55.50 0.52 -21.87 16 19 Si 0.93 19.81 29.58 -169.99 -5.03 14.78 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 21 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 22 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 23 C 0.22 4.27 4.81 -6.83 -0.03 4.23 16 24 C 0.25 5.40 12.13 -20.76 -0.25 5.15 16 25 N -0.47 -11.15 18.54 42.15 0.78 -10.37 16 26 H 0.07 0.96 5.86 -51.93 -0.30 0.66 16 27 H 0.06 0.74 6.43 -51.93 -0.33 0.40 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.05 0.85 6.48 -51.93 -0.34 0.51 16 30 H 0.07 0.84 6.97 -51.93 -0.36 0.48 16 31 H 0.07 0.84 6.12 -51.93 -0.32 0.52 16 32 H 0.06 0.66 6.63 -51.93 -0.34 0.32 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.63 6.62 -51.93 -0.34 0.28 16 38 H 0.07 0.74 6.98 -51.93 -0.36 0.38 16 39 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.07 0.98 7.46 -51.93 -0.39 0.59 16 42 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 43 H 0.08 1.28 4.80 -51.93 -0.25 1.03 16 44 H 0.13 2.51 6.72 -51.93 -0.35 2.16 16 LS Contribution 339.81 15.07 5.12 5.12 Total: -1.00 -31.25 339.81 -7.35 -38.60 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -6.46 Total: 2.71 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -1.26 Total: 4.32 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 0.99 Total: -43.03 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.72 Total: -22.52 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.03 Total: 14.78 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.25 -7.35 -38.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346775342.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.565 kcal (2) G-P(sol) polarization free energy of solvation -31.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds