Wall clock time and date at job start Tue Mar 31 2020 07:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47534 * 2 1 4 4 O 1.42911 * 109.47257 * 239.99994 * 2 1 3 5 5 C 1.42893 * 113.99615 * 99.23855 * 4 2 1 6 6 C 1.54249 * 108.89655 * 265.42435 * 5 4 2 7 7 C 1.50557 * 108.48188 * 159.18202 * 6 5 4 8 8 C 1.54066 * 112.41552 * 94.27070 * 7 6 5 9 9 C 1.54072 * 112.81390 * 318.27734 * 8 7 6 10 10 C 1.50472 * 112.49286 * 318.28405 * 9 8 7 11 11 C 1.45544 * 108.89525 * 142.63494 * 5 4 2 12 12 C 1.50703 * 109.47271 * 120.00416 * 2 1 3 13 13 O 1.21289 * 120.00193 * 101.10693 * 12 2 1 14 14 N 1.34782 * 119.99700 * 281.10558 * 12 2 1 15 15 C 1.37094 * 120.00158 * 184.17692 * 14 12 2 16 16 H 1.07997 * 119.99563 * 335.76286 * 15 14 12 17 17 C 1.38950 * 120.00089 * 155.76481 * 15 14 12 18 18 N 1.31407 * 120.00226 * 345.61551 * 17 15 14 19 19 Si 1.86801 * 119.99786 * 165.61202 * 17 15 14 20 20 H 1.48501 * 109.47018 * 90.00054 * 19 17 15 21 21 H 1.48492 * 109.47159 * 209.99678 * 19 17 15 22 22 H 1.48497 * 109.47274 * 330.00185 * 19 17 15 23 23 C 1.46499 * 119.99786 * 4.17245 * 14 12 2 24 24 C 1.47197 * 109.47432 * 275.98988 * 23 14 12 25 25 N 3.94000 * 116.43932 * 30.99313 * 2 1 3 26 26 H 1.08993 * 109.46860 * 294.19221 * 1 2 3 27 27 H 1.09000 * 109.47219 * 54.19625 * 1 2 3 28 28 H 1.09000 * 109.46987 * 174.19635 * 1 2 3 29 29 H 1.09002 * 108.87847 * 24.03019 * 5 4 2 30 30 H 1.09001 * 109.62998 * 278.97875 * 6 5 4 31 31 H 1.08998 * 109.62615 * 39.56052 * 6 5 4 32 32 H 1.08999 * 108.92610 * 333.50780 * 7 6 5 33 33 H 1.09006 * 108.91198 * 215.01766 * 7 6 5 34 34 H 1.08998 * 108.81268 * 197.41801 * 8 7 6 35 35 H 1.09001 * 108.73055 * 79.07359 * 8 7 6 36 36 H 1.09001 * 108.87256 * 197.51312 * 9 8 7 37 37 H 1.08997 * 108.87893 * 79.06426 * 9 8 7 38 38 H 1.09000 * 109.63213 * 334.44551 * 10 9 8 39 39 H 1.09008 * 109.62753 * 213.86579 * 10 9 8 40 40 H 1.08994 * 108.89326 * 303.44368 * 11 5 4 41 41 H 1.09003 * 108.89254 * 62.02879 * 11 5 4 42 42 H 0.96993 * 120.00141 * 180.02562 * 18 17 15 43 43 H 1.09003 * 109.47453 * 35.99015 * 23 14 12 44 44 H 1.09000 * 109.47244 * 155.98421 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1669 5 6 2.3977 0.2032 -2.2251 6 6 1.2091 0.3808 -3.1920 7 6 1.4191 1.6470 -3.9789 8 6 2.1093 1.3900 -5.3322 9 6 3.2573 0.3673 -5.2326 10 6 4.1031 0.5690 -4.0045 11 6 3.5704 -0.3500 -2.8862 12 6 2.0324 -0.7105 1.2304 13 8 2.4253 -1.8553 1.1518 14 7 2.0450 -0.0738 2.4183 15 6 2.5808 -0.6889 3.5201 16 1 2.6314 -1.7667 3.5656 17 6 3.0588 0.0744 4.5783 18 7 3.2619 1.3630 4.4199 19 14 3.4124 -0.7313 6.2261 20 1 4.8205 -1.2021 6.2547 21 1 3.1981 0.2549 7.3154 22 1 2.5000 -1.8870 6.4180 23 6 1.4863 1.2757 2.5319 24 6 2.5011 2.2626 2.1282 25 7 3.2843 3.0242 1.8166 26 1 -0.3633 0.4211 0.9374 27 1 -0.3633 0.6012 -0.8335 28 1 -0.3633 -1.0224 -0.1039 29 1 2.6562 1.1737 -1.8015 30 1 1.1592 -0.4703 -3.8711 31 1 0.2822 0.4538 -2.6232 32 1 2.0347 2.3294 -3.3930 33 1 0.4515 2.1151 -4.1599 34 1 2.5093 2.3320 -5.7072 35 1 1.3672 1.0178 -6.0385 36 1 3.8897 0.4600 -6.1155 37 1 2.8339 -0.6368 -5.2082 38 1 4.0414 1.6090 -3.6842 39 1 5.1389 0.3123 -4.2271 40 1 4.3565 -0.4971 -2.1457 41 1 3.3088 -1.3155 -3.3194 42 1 3.5958 1.8957 5.1584 43 1 0.6151 1.3642 1.8829 44 1 1.1902 1.4606 3.5645 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346775342.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:51 Heat of formation + Delta-G solvation = -74.601341 kcal Electronic energy + Delta-G solvation = -24910.408343 eV Core-core repulsion = 21441.280036 eV Total energy + Delta-G solvation = -3469.128307 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.22586 -40.16159 -37.88059 -37.40477 -36.13710 -34.07070 -33.25104 -32.68846 -31.28458 -29.15693 -27.16326 -25.70854 -25.38508 -24.33090 -21.81777 -21.01862 -20.14904 -19.78659 -18.59066 -18.06871 -17.51024 -17.04940 -16.51629 -16.21828 -15.86979 -15.52483 -15.45927 -14.85983 -14.83673 -14.40766 -14.37966 -14.04553 -13.92578 -13.80325 -13.37005 -13.22212 -13.14723 -13.05667 -12.90805 -12.89520 -12.65940 -12.39928 -12.14170 -12.11734 -11.98755 -11.85796 -11.52219 -11.41071 -11.22947 -11.15338 -11.12817 -10.74177 -10.13658 -9.90472 -8.40642 -6.05407 1.37427 1.46100 1.57609 1.73701 1.99642 2.21470 2.29149 2.50378 2.99380 3.21141 3.50366 3.63115 3.80451 3.86684 3.97980 4.00250 4.15027 4.17799 4.23393 4.31138 4.35878 4.43157 4.44076 4.55046 4.74211 4.80784 4.86854 4.87433 4.97997 5.01276 5.08084 5.19437 5.24850 5.27118 5.33022 5.33218 5.40224 5.44923 5.45558 5.58132 5.96546 6.23761 6.44770 6.98105 7.08661 7.28908 7.86611 8.62670 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024731 B = 0.004102 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.901578 B = 6824.429121 C = 6989.101021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.083 3.917 3 H 0.074 0.926 4 O -0.380 6.380 5 C 0.088 3.912 6 C -0.127 4.127 7 C -0.119 4.119 8 C -0.114 4.114 9 C -0.119 4.119 10 C -0.105 4.105 11 C -0.125 4.125 12 C 0.448 3.552 13 O -0.604 6.604 14 N -0.453 5.453 15 C -0.339 4.339 16 H 0.080 0.920 17 C 0.006 3.994 18 N -0.897 5.897 19 Si 0.990 3.010 20 H -0.288 1.288 21 H -0.269 1.269 22 H -0.263 1.263 23 C 0.217 3.783 24 C 0.256 3.744 25 N -0.504 5.504 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.036 0.964 41 H 0.068 0.932 42 H 0.275 0.725 43 H 0.136 0.864 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.247 3.714 -14.370 16.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.022 3.978 3 H 0.092 0.908 4 O -0.299 6.299 5 C 0.031 3.969 6 C -0.165 4.165 7 C -0.156 4.156 8 C -0.152 4.152 9 C -0.157 4.157 10 C -0.143 4.143 11 C -0.162 4.162 12 C 0.238 3.762 13 O -0.487 6.487 14 N -0.174 5.174 15 C -0.467 4.467 16 H 0.098 0.902 17 C -0.196 4.196 18 N -0.536 5.536 19 Si 0.814 3.186 20 H -0.215 1.215 21 H -0.193 1.193 22 H -0.187 1.187 23 C 0.091 3.909 24 C -0.061 4.061 25 N -0.185 5.185 26 H 0.109 0.891 27 H 0.115 0.885 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.055 0.945 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.153 0.847 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.829 4.219 -14.758 16.800 hybrid contribution 0.637 -0.529 1.461 1.679 sum -6.192 3.690 -13.297 15.125 Atomic orbital electron populations 1.22356 0.90856 1.04054 1.04719 1.22029 0.97187 0.94363 0.84217 0.90782 1.88036 1.84275 1.34179 1.23373 1.21403 0.95511 0.92153 0.87838 1.21859 0.97250 0.99490 0.97899 1.21319 1.01385 0.96543 0.96376 1.21917 0.97243 0.99324 0.96693 1.21363 0.97044 0.99880 0.97384 1.21219 0.99607 0.99063 0.94399 1.20634 0.96396 1.00699 0.98509 1.21141 0.82340 0.87939 0.84806 1.90506 1.52279 1.20335 1.85627 1.43688 1.53014 1.13379 1.07350 1.19617 1.39846 0.92794 0.94421 0.90186 1.25959 0.94808 0.96002 1.02800 1.69789 1.43687 1.06754 1.33380 0.84973 0.78060 0.78351 0.77199 1.21451 1.19315 1.18748 1.19235 0.89548 0.76846 1.05288 1.29684 0.94044 0.92941 0.89463 1.80884 1.10061 1.13146 1.14411 0.89113 0.88494 0.91716 0.93543 0.90754 0.90459 0.92903 0.90326 0.91484 0.91105 0.90892 0.92208 0.91676 0.90896 0.94462 0.91310 0.91495 0.84717 0.85527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.30 9.01 71.98 0.65 -3.66 16 2 C 0.08 3.05 2.39 29.85 0.07 3.12 16 3 H 0.07 2.62 5.52 -2.39 -0.01 2.60 16 4 O -0.38 -14.45 9.12 -130.66 -1.19 -15.64 16 5 C 0.09 2.60 2.14 28.74 0.06 2.66 16 6 C -0.13 -2.78 5.24 30.23 0.16 -2.62 16 7 C -0.12 -2.08 5.32 30.16 0.16 -1.91 16 8 C -0.11 -1.72 5.85 31.32 0.18 -1.54 16 9 C -0.12 -2.03 5.31 30.14 0.16 -1.87 16 10 C -0.11 -2.26 5.61 30.20 0.17 -2.09 16 11 C -0.12 -3.57 4.82 28.74 0.14 -3.43 16 12 C 0.45 21.57 6.84 87.66 0.60 22.17 16 13 O -0.60 -34.86 16.30 15.26 0.25 -34.61 16 14 N -0.45 -21.48 2.59 -645.42 -1.67 -23.15 16 15 C -0.34 -17.96 9.26 84.04 0.78 -17.18 16 16 H 0.08 4.57 7.42 -2.91 -0.02 4.55 16 17 C 0.01 0.30 4.99 84.93 0.42 0.72 16 18 N -0.90 -45.00 9.31 21.66 0.20 -44.80 16 19 Si 0.99 40.57 29.58 68.60 2.03 42.60 16 20 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 22 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 23 C 0.22 8.29 4.81 84.57 0.41 8.70 16 24 C 0.26 11.05 12.13 89.44 1.09 12.14 16 25 N -0.50 -23.53 18.54 20.01 0.37 -23.16 16 26 H 0.09 2.06 5.86 -2.39 -0.01 2.04 16 27 H 0.10 1.91 6.43 -2.39 -0.02 1.90 16 28 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.05 1.43 6.48 -2.39 -0.02 1.41 16 30 H 0.07 1.59 6.97 -2.39 -0.02 1.57 16 31 H 0.08 1.59 6.12 -2.39 -0.01 1.57 16 32 H 0.05 1.03 6.63 -2.39 -0.02 1.01 16 33 H 0.08 1.12 8.14 -2.38 -0.02 1.11 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.06 1.07 6.62 -2.39 -0.02 1.06 16 38 H 0.06 1.41 6.98 -2.39 -0.02 1.39 16 39 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 40 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.07 1.95 7.46 -2.39 -0.02 1.93 16 42 H 0.27 13.33 8.31 -92.71 -0.77 12.56 16 43 H 0.14 3.72 4.80 -2.39 -0.01 3.71 16 44 H 0.13 4.89 6.72 -2.39 -0.02 4.87 16 Total: -1.00 -70.05 339.81 6.04 -64.01 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 1.01 Total: 19.55 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: 5.05 Total: 15.21 kcal Atomic # 7 Polarization: -90.02 SS G_CDS: -1.10 Total: -91.12 kcal Atomic # 8 Polarization: -49.31 SS G_CDS: -0.94 Total: -50.25 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -70.05 6.04 -64.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346775342.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.595 kcal (2) G-P(sol) polarization free energy of solvation -70.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds