Wall clock time and date at job start Tue Mar 31 2020 07:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 110.53908 * 2 1 4 4 C 1.51584 * 110.56590 * 123.01810 * 2 1 3 5 5 O 1.21237 * 127.15549 * 298.75533 * 4 2 1 6 6 N 1.34770 * 105.68622 * 118.83097 * 4 2 1 7 7 C 1.46506 * 124.17692 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.46748 * 269.70214 * 7 6 4 9 9 C 1.52990 * 109.47546 * 59.99983 * 8 7 6 10 10 C 1.53005 * 109.47190 * 299.99570 * 8 7 6 11 11 C 1.53004 * 109.47000 * 180.02562 * 8 7 6 12 12 C 1.50701 * 109.47211 * 180.02562 * 11 8 7 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 11 8 14 14 C 1.37871 * 119.99694 * 180.27574 * 12 11 8 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 11 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 11 17 17 H 1.48504 * 109.47266 * 60.00049 * 16 14 12 18 18 H 1.48504 * 109.46970 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47383 * 299.99456 * 16 14 12 20 20 C 1.33794 * 111.64371 * 359.65734 * 6 4 2 21 21 O 1.21540 * 123.76998 * 180.22688 * 20 6 4 22 22 N 1.34521 * 112.45569 * 0.23384 * 20 6 4 23 23 C 1.46504 * 126.68925 * 179.97438 * 22 20 6 24 24 C 1.52999 * 117.49650 * 8.76724 * 23 22 20 25 25 C 1.53000 * 117.49789 * 300.11172 * 23 22 20 26 26 H 1.09009 * 109.46907 * 182.82812 * 1 2 3 27 27 H 1.08993 * 109.47336 * 302.82839 * 1 2 3 28 28 H 1.08998 * 109.47393 * 62.83427 * 1 2 3 29 29 H 1.08995 * 109.46761 * 149.69991 * 7 6 4 30 30 H 1.08998 * 109.46975 * 29.70289 * 7 6 4 31 31 H 1.09005 * 109.47428 * 179.97438 * 9 8 7 32 32 H 1.09004 * 109.47351 * 299.99974 * 9 8 7 33 33 H 1.09006 * 109.47240 * 60.00039 * 9 8 7 34 34 H 1.08995 * 109.47438 * 300.00908 * 10 8 7 35 35 H 1.09004 * 109.46658 * 60.00669 * 10 8 7 36 36 H 1.08996 * 109.47069 * 180.02562 * 10 8 7 37 37 H 1.09000 * 109.47211 * 59.99130 * 11 8 7 38 38 H 1.09007 * 109.46376 * 299.99672 * 11 8 7 39 39 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 40 40 H 1.08999 * 115.54992 * 154.43986 * 23 22 20 41 41 H 1.09000 * 117.50133 * 0.02562 * 24 23 22 42 42 H 1.09002 * 117.49984 * 145.01695 * 24 23 22 43 43 H 1.09003 * 117.49760 * 214.97698 * 25 23 22 44 44 H 1.08995 * 117.49752 * 359.97229 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0624 -0.7733 1.1900 5 8 1.8844 -0.5256 2.3634 6 7 2.7762 -1.7926 0.6724 7 6 3.4746 -2.7995 1.4754 8 6 4.9030 -2.3280 1.7548 9 6 4.8625 -1.0039 2.5201 10 6 5.6427 -2.1292 0.4303 11 6 5.6325 -3.3799 2.5929 12 6 7.0393 -2.9152 2.8687 13 1 7.3792 -1.9648 2.4842 14 6 7.8943 -3.7061 3.6064 15 7 7.4806 -4.8634 4.0743 16 14 9.6406 -3.1336 3.9417 17 1 9.6061 -1.8498 4.6874 18 1 10.3501 -4.1567 4.7511 19 1 10.3536 -2.9390 2.6537 20 6 2.7627 -1.7752 -0.6653 21 8 3.3324 -2.5959 -1.3575 22 7 2.0483 -0.7476 -1.1587 23 6 1.8289 -0.4330 -2.5726 24 6 2.2919 -1.4625 -3.6054 25 6 3.0621 -0.1510 -3.4332 26 1 -0.3633 -1.0265 0.0507 27 1 -0.3633 0.5571 0.8635 28 1 -0.3634 0.4692 -0.9143 29 1 3.5034 -3.7429 0.9301 30 1 2.9475 -2.9412 2.4189 31 1 5.8802 -0.6682 2.7195 32 1 4.3429 -0.2546 1.9227 33 1 4.3355 -1.1455 3.4637 34 1 5.6716 -3.0725 -0.1149 35 1 5.1232 -1.3800 -0.1671 36 1 6.6605 -1.7937 0.6294 37 1 5.6613 -4.3231 2.0473 38 1 5.1056 -3.5219 3.5365 39 1 8.0822 -5.4200 4.5930 40 1 0.9215 0.1289 -2.7939 41 1 2.7594 -2.3740 -3.2329 42 1 1.6893 -1.5777 -4.5064 43 1 2.9659 0.5963 -4.2209 44 1 4.0366 -0.1990 -2.9472 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348958861.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:52 Heat of formation + Delta-G solvation = -18.183044 kcal Electronic energy + Delta-G solvation = -25300.199816 eV Core-core repulsion = 21833.517990 eV Total energy + Delta-G solvation = -3466.681826 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.46073 -38.81805 -37.65942 -36.41377 -36.04128 -33.72227 -32.15170 -30.44417 -27.50753 -26.81362 -26.42837 -24.66388 -23.75978 -22.70874 -22.51408 -21.46534 -19.76257 -18.22504 -17.58582 -16.77553 -16.32384 -16.19046 -16.00416 -15.11492 -14.74108 -14.63275 -14.39486 -14.10191 -13.71189 -13.54163 -13.40691 -12.94172 -12.67895 -12.63725 -12.22993 -12.01602 -11.80927 -11.71568 -11.36968 -11.00935 -10.92857 -10.91113 -10.81871 -10.71910 -10.52927 -10.41449 -10.24346 -9.85524 -9.72430 -9.60067 -9.09210 -8.88835 -8.71735 -8.31532 -5.96156 -3.96618 1.72456 2.07805 2.90145 3.08779 3.35891 3.40334 3.42702 3.67899 3.96396 4.43081 4.49231 4.57002 4.62223 4.73288 4.82644 5.07040 5.22785 5.32257 5.39478 5.43237 5.51792 5.58643 5.63712 5.69913 5.79097 5.86276 5.95366 6.11876 6.20642 6.28684 6.39319 6.46698 6.49572 6.74739 6.83106 7.09835 7.17716 7.19125 7.28641 7.51348 7.65718 7.79702 8.02218 8.21843 8.45550 9.07023 9.66051 11.15443 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022590 B = 0.004355 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.201695 B = 6427.954829 C = 7047.018425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.091 3.909 3 H 0.123 0.877 4 C 0.523 3.477 5 O -0.463 6.463 6 N -0.566 5.566 7 C 0.125 3.875 8 C -0.075 4.075 9 C -0.121 4.121 10 C -0.117 4.117 11 C 0.038 3.962 12 C -0.508 4.508 13 H 0.058 0.942 14 C 0.057 3.943 15 N -0.896 5.896 16 Si 0.889 3.111 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.278 1.278 20 C 0.702 3.298 21 O -0.531 6.531 22 N -0.603 5.603 23 C 0.104 3.896 24 C -0.184 4.184 25 C -0.191 4.191 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.020 0.980 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.022 0.978 36 H 0.061 0.939 37 H 0.019 0.981 38 H 0.018 0.982 39 H 0.260 0.740 40 H 0.134 0.866 41 H 0.130 0.870 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.490 10.957 -13.134 23.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.016 4.016 3 H 0.140 0.860 4 C 0.310 3.690 5 O -0.333 6.333 6 N -0.310 5.310 7 C 0.005 3.995 8 C -0.076 4.076 9 C -0.178 4.178 10 C -0.174 4.174 11 C 0.001 3.999 12 C -0.547 4.547 13 H 0.076 0.924 14 C -0.144 4.144 15 N -0.536 5.536 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 C 0.405 3.595 21 O -0.405 6.405 22 N -0.340 5.340 23 C 0.001 3.999 24 C -0.221 4.221 25 C -0.229 4.229 26 H 0.085 0.915 27 H 0.102 0.898 28 H 0.093 0.907 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.039 0.961 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.041 0.959 36 H 0.080 0.920 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.070 0.930 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.201 10.441 -12.812 22.456 hybrid contribution 1.070 0.323 0.251 1.146 sum -14.131 10.764 -12.561 21.756 Atomic orbital electron populations 1.21903 0.90982 1.03742 1.03860 1.22103 0.97489 0.98168 0.83818 0.85983 1.20691 0.77612 0.80944 0.89788 1.90807 1.57245 1.68826 1.16382 1.46552 1.47999 1.28985 1.07470 1.22122 0.93717 0.89309 0.94330 1.21032 0.91567 0.98054 0.96917 1.21726 1.01801 0.95381 0.98880 1.21686 1.00216 1.00267 0.95246 1.19079 0.94634 0.92345 0.93872 1.21126 0.96644 1.04293 1.32606 0.92403 1.24986 0.98386 0.94993 0.96022 1.69946 1.35953 1.11199 1.36453 0.86710 0.85013 0.78328 0.78261 1.20332 1.21374 1.20330 1.15895 0.79597 0.82104 0.81903 1.90887 1.47929 1.41397 1.60238 1.47048 1.53736 1.28405 1.04850 1.21297 0.98583 1.04817 0.75198 1.23720 1.03159 0.96357 0.98880 1.23447 0.97185 0.99829 1.02485 0.91548 0.89820 0.90656 0.89023 0.89213 0.91669 0.96081 0.93037 0.92938 0.95900 0.91989 0.96255 0.96346 0.93026 0.84804 0.85168 0.88278 0.88059 0.88349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.46 37.15 0.35 -0.72 16 2 C 0.09 0.93 4.05 -68.21 -0.28 0.65 16 3 H 0.12 1.03 8.14 -51.93 -0.42 0.60 16 4 C 0.52 7.53 6.00 -10.55 -0.06 7.47 16 5 O -0.46 -7.75 16.90 5.59 0.09 -7.65 16 6 N -0.57 -9.01 2.12 -120.73 -0.26 -9.27 16 7 C 0.12 2.27 4.73 -4.04 -0.02 2.25 16 8 C -0.07 -1.55 0.60 -154.51 -0.09 -1.65 16 9 C -0.12 -2.44 7.25 37.15 0.27 -2.17 16 10 C -0.12 -2.40 7.10 37.16 0.26 -2.14 16 11 C 0.04 0.97 4.04 -27.88 -0.11 0.86 16 12 C -0.51 -14.02 7.65 -34.44 -0.26 -14.28 16 13 H 0.06 1.56 5.68 -52.49 -0.30 1.26 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 16 Si 0.89 21.79 29.54 -169.99 -5.02 16.76 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 C 0.70 10.79 6.64 -88.02 -0.58 10.21 16 21 O -0.53 -9.48 13.22 5.33 0.07 -9.41 16 22 N -0.60 -6.96 3.07 -164.83 -0.51 -7.47 16 23 C 0.10 0.93 6.81 -67.93 -0.46 0.47 16 24 C -0.18 -1.81 9.83 -26.70 -0.26 -2.07 16 25 C -0.19 -1.76 10.40 -26.70 -0.28 -2.04 16 26 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.38 7.76 -51.93 -0.40 -0.02 16 29 H 0.09 1.68 7.86 -51.93 -0.41 1.27 16 30 H 0.09 1.60 8.00 -51.93 -0.42 1.19 16 31 H 0.06 1.39 6.62 -51.93 -0.34 1.05 16 32 H 0.02 0.38 6.21 -51.93 -0.32 0.06 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.05 1.12 8.10 -51.93 -0.42 0.70 16 35 H 0.02 0.43 6.18 -51.93 -0.32 0.11 16 36 H 0.06 1.34 6.62 -51.93 -0.34 1.00 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 40 H 0.13 0.76 7.77 -51.93 -0.40 0.36 16 41 H 0.13 1.74 5.51 -51.93 -0.29 1.45 16 42 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 347.37 15.07 5.23 5.23 Total: -1.00 -32.08 347.37 -8.18 -40.26 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.91 Total: -0.76 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -1.63 Total: -1.63 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: -0.03 Total: -42.82 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: 0.16 Total: -17.06 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.08 -8.18 -40.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348958861.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.078 kcal (2) G-P(sol) polarization free energy of solvation -32.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds