Wall clock time and date at job start Tue Mar 31 2020 07:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 110.53908 * 2 1 4 4 C 1.51584 * 110.56590 * 123.01810 * 2 1 3 5 5 O 1.21237 * 127.15549 * 298.75533 * 4 2 1 6 6 N 1.34770 * 105.68622 * 118.83097 * 4 2 1 7 7 C 1.46506 * 124.17692 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.46748 * 269.70214 * 7 6 4 9 9 C 1.52990 * 109.47546 * 59.99983 * 8 7 6 10 10 C 1.53005 * 109.47190 * 299.99570 * 8 7 6 11 11 C 1.53004 * 109.47000 * 180.02562 * 8 7 6 12 12 C 1.50701 * 109.47211 * 180.02562 * 11 8 7 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 11 8 14 14 C 1.37871 * 119.99694 * 180.27574 * 12 11 8 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 11 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 11 17 17 H 1.48504 * 109.47266 * 60.00049 * 16 14 12 18 18 H 1.48504 * 109.46970 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47383 * 299.99456 * 16 14 12 20 20 C 1.33794 * 111.64371 * 359.65734 * 6 4 2 21 21 O 1.21540 * 123.76998 * 180.22688 * 20 6 4 22 22 N 1.34521 * 112.45569 * 0.23384 * 20 6 4 23 23 C 1.46504 * 126.68925 * 179.97438 * 22 20 6 24 24 C 1.52999 * 117.49650 * 8.76724 * 23 22 20 25 25 C 1.53000 * 117.49789 * 300.11172 * 23 22 20 26 26 H 1.09009 * 109.46907 * 182.82812 * 1 2 3 27 27 H 1.08993 * 109.47336 * 302.82839 * 1 2 3 28 28 H 1.08998 * 109.47393 * 62.83427 * 1 2 3 29 29 H 1.08995 * 109.46761 * 149.69991 * 7 6 4 30 30 H 1.08998 * 109.46975 * 29.70289 * 7 6 4 31 31 H 1.09005 * 109.47428 * 179.97438 * 9 8 7 32 32 H 1.09004 * 109.47351 * 299.99974 * 9 8 7 33 33 H 1.09006 * 109.47240 * 60.00039 * 9 8 7 34 34 H 1.08995 * 109.47438 * 300.00908 * 10 8 7 35 35 H 1.09004 * 109.46658 * 60.00669 * 10 8 7 36 36 H 1.08996 * 109.47069 * 180.02562 * 10 8 7 37 37 H 1.09000 * 109.47211 * 59.99130 * 11 8 7 38 38 H 1.09007 * 109.46376 * 299.99672 * 11 8 7 39 39 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 40 40 H 1.08999 * 115.54992 * 154.43986 * 23 22 20 41 41 H 1.09000 * 117.50133 * 0.02562 * 24 23 22 42 42 H 1.09002 * 117.49984 * 145.01695 * 24 23 22 43 43 H 1.09003 * 117.49760 * 214.97698 * 25 23 22 44 44 H 1.08995 * 117.49752 * 359.97229 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0624 -0.7733 1.1900 5 8 1.8844 -0.5256 2.3634 6 7 2.7762 -1.7926 0.6724 7 6 3.4746 -2.7995 1.4754 8 6 4.9030 -2.3280 1.7548 9 6 4.8625 -1.0039 2.5201 10 6 5.6427 -2.1292 0.4303 11 6 5.6325 -3.3799 2.5929 12 6 7.0393 -2.9152 2.8687 13 1 7.3792 -1.9648 2.4842 14 6 7.8943 -3.7061 3.6064 15 7 7.4806 -4.8634 4.0743 16 14 9.6406 -3.1336 3.9417 17 1 9.6061 -1.8498 4.6874 18 1 10.3501 -4.1567 4.7511 19 1 10.3536 -2.9390 2.6537 20 6 2.7627 -1.7752 -0.6653 21 8 3.3324 -2.5959 -1.3575 22 7 2.0483 -0.7476 -1.1587 23 6 1.8289 -0.4330 -2.5726 24 6 2.2919 -1.4625 -3.6054 25 6 3.0621 -0.1510 -3.4332 26 1 -0.3633 -1.0265 0.0507 27 1 -0.3633 0.5571 0.8635 28 1 -0.3634 0.4692 -0.9143 29 1 3.5034 -3.7429 0.9301 30 1 2.9475 -2.9412 2.4189 31 1 5.8802 -0.6682 2.7195 32 1 4.3429 -0.2546 1.9227 33 1 4.3355 -1.1455 3.4637 34 1 5.6716 -3.0725 -0.1149 35 1 5.1232 -1.3800 -0.1671 36 1 6.6605 -1.7937 0.6294 37 1 5.6613 -4.3231 2.0473 38 1 5.1056 -3.5219 3.5365 39 1 8.0822 -5.4200 4.5930 40 1 0.9215 0.1289 -2.7939 41 1 2.7594 -2.3740 -3.2329 42 1 1.6893 -1.5777 -4.5064 43 1 2.9659 0.5963 -4.2209 44 1 4.0366 -0.1990 -2.9472 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348958861.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:52 Heat of formation + Delta-G solvation = -37.094105 kcal Electronic energy + Delta-G solvation = -25301.019861 eV Core-core repulsion = 21833.517990 eV Total energy + Delta-G solvation = -3467.501871 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.59593 -39.94681 -39.01343 -37.67019 -37.17140 -35.12639 -34.05008 -31.26011 -29.30824 -28.48684 -28.15071 -25.79199 -25.22436 -24.06602 -23.33674 -22.43573 -20.87647 -19.85216 -18.66769 -18.44541 -17.80468 -17.30766 -17.15158 -16.64512 -16.21663 -15.71124 -15.57629 -15.31558 -15.19441 -14.94481 -14.52033 -14.31851 -14.06268 -13.92109 -13.60592 -13.26769 -12.91109 -12.84417 -12.79320 -12.66947 -12.61483 -12.48393 -12.41831 -12.18505 -12.11380 -11.71563 -11.55997 -11.35841 -11.26414 -11.04882 -10.97707 -10.52938 -10.51228 -9.70682 -8.16481 -6.24113 0.60479 1.02391 1.39601 1.41902 1.49253 1.88811 1.94213 2.42213 2.90455 2.98798 3.17403 3.59274 3.86383 3.88084 3.92482 3.99922 4.01884 4.06224 4.15365 4.30225 4.37656 4.48188 4.62264 4.64949 4.73203 4.76707 4.82098 4.86579 4.97457 5.04167 5.08470 5.16869 5.21517 5.30396 5.34226 5.36458 5.39054 5.48305 5.59804 5.71465 5.84403 6.16823 6.27423 6.37823 6.87960 7.06044 7.42871 8.95644 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022590 B = 0.004355 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.201695 B = 6427.954829 C = 7047.018425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.102 3.898 3 H 0.153 0.847 4 C 0.515 3.485 5 O -0.491 6.491 6 N -0.574 5.574 7 C 0.134 3.866 8 C -0.069 4.069 9 C -0.108 4.108 10 C -0.101 4.101 11 C 0.046 3.954 12 C -0.519 4.519 13 H 0.063 0.937 14 C 0.001 3.999 15 N -0.934 5.934 16 Si 0.957 3.043 17 H -0.268 1.268 18 H -0.285 1.285 19 H -0.270 1.270 20 C 0.692 3.308 21 O -0.565 6.565 22 N -0.592 5.592 23 C 0.107 3.893 24 C -0.196 4.196 25 C -0.188 4.188 26 H 0.054 0.946 27 H 0.092 0.908 28 H 0.110 0.890 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.041 0.959 33 H 0.042 0.958 34 H 0.036 0.964 35 H 0.038 0.962 36 H 0.048 0.952 37 H -0.009 1.009 38 H -0.006 1.006 39 H 0.261 0.739 40 H 0.183 0.817 41 H 0.090 0.910 42 H 0.127 0.873 43 H 0.133 0.867 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.824 13.981 -14.753 26.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.004 4.004 3 H 0.171 0.829 4 C 0.303 3.697 5 O -0.362 6.362 6 N -0.318 5.318 7 C 0.012 3.988 8 C -0.070 4.070 9 C -0.165 4.165 10 C -0.158 4.158 11 C 0.008 3.992 12 C -0.557 4.557 13 H 0.081 0.919 14 C -0.197 4.197 15 N -0.575 5.575 16 Si 0.782 3.218 17 H -0.193 1.193 18 H -0.211 1.211 19 H -0.195 1.195 20 C 0.395 3.605 21 O -0.441 6.441 22 N -0.329 5.329 23 C 0.006 3.994 24 C -0.234 4.234 25 C -0.226 4.226 26 H 0.073 0.927 27 H 0.111 0.889 28 H 0.129 0.871 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.010 0.990 38 H 0.013 0.987 39 H 0.070 0.930 40 H 0.200 0.800 41 H 0.108 0.892 42 H 0.145 0.855 43 H 0.151 0.849 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.567 13.513 -14.460 25.810 hybrid contribution 1.443 -0.647 0.722 1.739 sum -15.124 12.866 -13.738 24.145 Atomic orbital electron populations 1.21955 0.88072 1.03665 1.06140 1.22331 0.99404 0.98069 0.80593 0.82938 1.21517 0.76841 0.80581 0.90727 1.90794 1.58089 1.69435 1.17900 1.46559 1.48230 1.29090 1.07946 1.21705 0.92464 0.89828 0.94754 1.20854 0.92803 0.97085 0.96276 1.21570 1.01057 0.95222 0.98640 1.21497 0.99514 0.99794 0.94984 1.18907 0.94537 0.92601 0.93116 1.21481 0.97576 1.04417 1.32218 0.91880 1.25873 1.02830 0.95062 0.95899 1.70085 1.37541 1.12480 1.37354 0.85628 0.79717 0.78101 0.78383 1.19271 1.21060 1.19480 1.16123 0.80055 0.82868 0.81423 1.90887 1.49527 1.42936 1.60730 1.47266 1.52250 1.26972 1.06414 1.21886 1.00088 1.04247 0.73198 1.23649 1.04134 0.95108 1.00463 1.23454 0.95781 1.00204 1.03198 0.92714 0.88881 0.87129 0.89933 0.89328 0.92931 0.94051 0.93904 0.94493 0.94348 0.93260 0.99019 0.98724 0.92983 0.79984 0.89174 0.85498 0.84855 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.46 71.98 0.68 -0.76 16 2 C 0.10 1.71 4.05 44.37 0.18 1.89 16 3 H 0.15 1.80 8.14 -2.39 -0.02 1.78 16 4 C 0.51 14.11 6.00 87.94 0.53 14.63 16 5 O -0.49 -15.98 16.90 -2.90 -0.05 -16.03 16 6 N -0.57 -18.22 2.12 -773.11 -1.64 -19.86 16 7 C 0.13 5.06 4.73 86.38 0.41 5.47 16 8 C -0.07 -2.97 0.60 -52.18 -0.03 -3.00 16 9 C -0.11 -4.38 7.25 71.98 0.52 -3.86 16 10 C -0.10 -4.25 7.10 71.98 0.51 -3.73 16 11 C 0.05 2.45 4.04 29.85 0.12 2.57 16 12 C -0.52 -29.35 7.65 25.60 0.20 -29.16 16 13 H 0.06 3.44 5.68 -2.91 -0.02 3.42 16 14 C 0.00 0.04 5.46 84.65 0.46 0.50 16 15 N -0.93 -57.52 13.29 21.45 0.28 -57.23 16 16 Si 0.96 45.11 29.54 68.60 2.03 47.14 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 18 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 19 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 20 C 0.69 20.97 6.64 179.44 1.19 22.16 16 21 O -0.56 -20.72 13.22 -3.84 -0.05 -20.77 16 22 N -0.59 -12.11 3.07 -793.84 -2.44 -14.56 16 23 C 0.11 1.51 6.81 44.99 0.31 1.81 16 24 C -0.20 -3.48 9.83 30.62 0.30 -3.18 16 25 C -0.19 -2.97 10.40 30.62 0.32 -2.65 16 26 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 27 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.11 0.42 7.76 -2.39 -0.02 0.40 16 29 H 0.08 3.23 7.86 -2.39 -0.02 3.21 16 30 H 0.09 3.32 8.00 -2.39 -0.02 3.30 16 31 H 0.05 2.25 6.62 -2.38 -0.02 2.23 16 32 H 0.04 1.49 6.21 -2.38 -0.01 1.47 16 33 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.04 1.64 8.10 -2.39 -0.02 1.62 16 35 H 0.04 1.47 6.18 -2.38 -0.01 1.46 16 36 H 0.05 2.17 6.62 -2.39 -0.02 2.15 16 37 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 38 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 39 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 40 H 0.18 0.86 7.77 -2.39 -0.02 0.85 16 41 H 0.09 2.44 5.51 -2.39 -0.01 2.43 16 42 H 0.13 1.49 8.14 -2.39 -0.02 1.48 16 43 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -73.49 347.37 4.82 -68.67 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 0.99 Total: 9.93 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 5.69 Total: 2.71 kcal Atomic # 7 Polarization: -87.85 SS G_CDS: -3.80 Total: -91.65 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -0.10 Total: -36.80 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -73.49 4.82 -68.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348958861.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.576 kcal (2) G-P(sol) polarization free energy of solvation -73.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds