Wall clock time and date at job start Tue Mar 31 2020 07:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.53592 * 2 1 4 4 C 1.51577 * 110.89948 * 237.16822 * 2 1 3 5 5 O 1.21230 * 127.15788 * 61.57931 * 4 2 1 6 6 N 1.34774 * 105.68468 * 241.65290 * 4 2 1 7 7 C 1.46492 * 124.17786 * 179.97438 * 6 4 2 8 8 C 1.52995 * 109.47395 * 269.70235 * 7 6 4 9 9 C 1.53008 * 109.47410 * 59.99690 * 8 7 6 10 10 C 1.53007 * 109.46927 * 300.00053 * 8 7 6 11 11 C 1.52997 * 109.47600 * 179.97438 * 8 7 6 12 12 C 1.50694 * 109.47460 * 179.97438 * 11 8 7 13 13 H 1.08002 * 120.00179 * 359.97438 * 12 11 8 14 14 C 1.37879 * 120.00472 * 180.02562 * 12 11 8 15 15 N 1.31514 * 119.99350 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00608 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47326 * 270.00340 * 16 14 12 18 18 H 1.48506 * 109.46545 * 30.00090 * 16 14 12 19 19 H 1.48498 * 109.47210 * 149.99801 * 16 14 12 20 20 C 1.33791 * 111.64333 * 359.65981 * 6 4 2 21 21 O 1.21534 * 123.76949 * 180.23282 * 20 6 4 22 22 N 1.34526 * 112.45697 * 0.22738 * 20 6 4 23 23 C 1.46503 * 126.68836 * 180.02562 * 22 20 6 24 24 C 1.53001 * 117.49731 * 8.60000 * 23 22 20 25 25 C 1.52999 * 117.49950 * 299.97561 * 23 22 20 26 26 H 1.08998 * 109.47334 * 297.18257 * 1 2 3 27 27 H 1.08999 * 109.47020 * 57.17644 * 1 2 3 28 28 H 1.08998 * 109.46966 * 177.17417 * 1 2 3 29 29 H 1.09002 * 109.47526 * 149.69813 * 7 6 4 30 30 H 1.09006 * 109.47127 * 29.69841 * 7 6 4 31 31 H 1.08993 * 109.47049 * 180.02562 * 9 8 7 32 32 H 1.09001 * 109.46762 * 300.00479 * 9 8 7 33 33 H 1.08999 * 109.46696 * 59.99877 * 9 8 7 34 34 H 1.09002 * 109.46630 * 299.99586 * 10 8 7 35 35 H 1.09001 * 109.46852 * 59.99769 * 10 8 7 36 36 H 1.08998 * 109.46963 * 179.97438 * 10 8 7 37 37 H 1.09005 * 109.46800 * 60.00280 * 11 8 7 38 38 H 1.08998 * 109.47382 * 300.00079 * 11 8 7 39 39 H 0.97005 * 119.99661 * 179.97438 * 15 14 12 40 40 H 1.09003 * 115.55010 * 154.31045 * 23 22 20 41 41 H 1.08994 * 117.50391 * 0.02562 * 24 23 22 42 42 H 1.09006 * 117.49253 * 145.02400 * 24 23 22 43 43 H 1.08997 * 117.50261 * 214.97459 * 25 23 22 44 44 H 1.08997 * 117.49928 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0208 0.0000 4 6 2.0707 -0.7677 -1.1899 5 8 1.9024 -0.5136 -2.3632 6 7 2.7763 -1.7927 -0.6721 7 6 3.4775 -2.7976 -1.4748 8 6 2.5379 -3.9717 -1.7566 9 6 1.3120 -3.4713 -2.5233 10 6 2.0916 -4.5967 -0.4332 11 6 3.2701 -5.0210 -2.5955 12 6 2.3448 -6.1777 -2.8725 13 1 1.3355 -6.1659 -2.4883 14 6 2.7869 -7.2517 -3.6156 15 7 4.0161 -7.2663 -4.0830 16 14 1.6402 -8.6858 -3.9584 17 1 1.7741 -9.6959 -2.8782 18 1 0.2385 -8.1977 -4.0087 19 1 1.9961 -9.3038 -5.2609 20 6 2.7627 -1.7751 0.6657 21 8 3.3323 -2.5957 1.3579 22 7 2.0482 -0.7474 1.1588 23 6 1.8288 -0.4327 2.5727 24 6 2.6286 -1.2287 3.6060 25 6 1.1310 -1.4893 3.4316 26 1 -0.3634 0.4694 0.9141 27 1 -0.3633 0.5570 -0.8636 28 1 -0.3633 -1.0264 -0.0507 29 1 4.3509 -3.1542 -0.9286 30 1 3.7954 -2.3523 -2.4176 31 1 0.6425 -4.3077 -2.7236 32 1 0.7902 -2.7236 -1.9259 33 1 1.6300 -3.0260 -3.4660 34 1 2.9650 -4.9533 0.1129 35 1 1.5698 -3.8489 0.1640 36 1 1.4219 -5.4329 -0.6340 37 1 4.1436 -5.3777 -2.0496 38 1 3.5877 -4.5755 -3.5382 39 1 4.3273 -8.0220 -4.6055 40 1 1.6203 0.6140 2.7945 41 1 3.3183 -1.9861 3.2339 42 1 2.9466 -0.7055 4.5079 43 1 0.4640 -1.1378 4.2188 44 1 0.8349 -2.4184 2.9447 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348958862.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:55 Heat of formation + Delta-G solvation = -18.212122 kcal Electronic energy + Delta-G solvation = -25399.290587 eV Core-core repulsion = 21932.607500 eV Total energy + Delta-G solvation = -3466.683087 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.45945 -38.81799 -37.65028 -36.41172 -36.03397 -33.71053 -32.15933 -30.42116 -27.49580 -26.78528 -26.42652 -24.69335 -23.75566 -22.59826 -22.53373 -21.56267 -19.76956 -18.27200 -17.18290 -17.03274 -16.27203 -16.21145 -16.11873 -15.13519 -14.74692 -14.50272 -14.42637 -14.08851 -13.62729 -13.55535 -13.40810 -12.89842 -12.69925 -12.62832 -12.17687 -12.02492 -11.81278 -11.70618 -11.35454 -11.01352 -10.92816 -10.91995 -10.81059 -10.72237 -10.53800 -10.41014 -10.23944 -9.84822 -9.72678 -9.59087 -9.09416 -8.88503 -8.71087 -8.31977 -5.96531 -3.96817 1.72387 2.08260 2.90262 3.09948 3.34300 3.40737 3.43508 3.67737 3.97758 4.42045 4.49013 4.59107 4.64754 4.75200 4.84492 5.06222 5.31037 5.34460 5.40367 5.45025 5.51897 5.58707 5.64126 5.78482 5.80199 5.86400 5.95408 6.12210 6.20905 6.28814 6.39537 6.46669 6.49896 6.74753 6.83051 7.09930 7.17792 7.18843 7.28896 7.51567 7.65817 7.79628 8.02066 8.22038 8.45424 9.07066 9.65875 11.15119 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021911 B = 0.004422 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.598405 B = 6330.747093 C = 6788.556515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.092 3.908 3 H 0.121 0.879 4 C 0.523 3.477 5 O -0.463 6.463 6 N -0.566 5.566 7 C 0.125 3.875 8 C -0.075 4.075 9 C -0.121 4.121 10 C -0.117 4.117 11 C 0.038 3.962 12 C -0.507 4.507 13 H 0.058 0.942 14 C 0.056 3.944 15 N -0.896 5.896 16 Si 0.889 3.111 17 H -0.281 1.281 18 H -0.275 1.275 19 H -0.287 1.287 20 C 0.702 3.298 21 O -0.531 6.531 22 N -0.603 5.603 23 C 0.105 3.895 24 C -0.184 4.184 25 C -0.190 4.190 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.021 0.979 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.022 0.978 36 H 0.061 0.939 37 H 0.019 0.981 38 H 0.018 0.982 39 H 0.259 0.741 40 H 0.135 0.865 41 H 0.130 0.870 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.775 17.743 13.171 22.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.015 4.015 3 H 0.139 0.861 4 C 0.309 3.691 5 O -0.333 6.333 6 N -0.310 5.310 7 C 0.005 3.995 8 C -0.075 4.075 9 C -0.178 4.178 10 C -0.174 4.174 11 C 0.000 4.000 12 C -0.546 4.546 13 H 0.076 0.924 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.717 3.283 17 H -0.208 1.208 18 H -0.200 1.200 19 H -0.213 1.213 20 C 0.405 3.595 21 O -0.405 6.405 22 N -0.341 5.341 23 C 0.002 3.998 24 C -0.222 4.222 25 C -0.229 4.229 26 H 0.095 0.905 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.040 0.960 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.041 0.959 36 H 0.080 0.920 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.069 0.931 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.396 17.301 12.846 22.214 hybrid contribution -0.582 -0.850 -0.259 1.062 sum -5.978 16.451 12.587 21.559 Atomic orbital electron populations 1.21904 0.90805 1.04008 1.03767 1.22103 0.97700 0.97895 0.83773 0.86136 1.20707 0.77766 0.80799 0.89801 1.90805 1.56700 1.69368 1.16394 1.46554 1.48888 1.28104 1.07467 1.22122 0.95510 0.87538 0.94342 1.21030 0.95421 0.94200 0.96894 1.21728 0.97612 0.99565 0.98879 1.21685 1.01039 0.99412 0.95260 1.19082 0.95252 0.91764 0.93879 1.21162 0.98539 1.02549 1.32328 0.92356 1.24993 0.95044 0.98363 0.96031 1.69962 1.16087 1.31084 1.36407 0.86646 0.81217 0.82881 0.77579 1.20770 1.19961 1.21322 1.15896 0.79919 0.81789 0.81902 1.90884 1.48396 1.40948 1.60230 1.47069 1.53266 1.28876 1.04853 1.21290 1.06677 0.96676 0.75189 1.23716 0.95814 1.03760 0.98868 1.23428 0.95809 1.01168 1.02488 0.90541 0.89936 0.91392 0.89020 0.89215 0.91695 0.96030 0.93057 0.92947 0.95898 0.92008 0.96270 0.96330 0.93091 0.84801 0.85173 0.88280 0.88094 0.88376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.48 37.16 0.35 -0.87 16 2 C 0.09 0.94 4.03 -68.21 -0.27 0.66 16 3 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 4 C 0.52 7.52 6.02 -10.55 -0.06 7.46 16 5 O -0.46 -7.75 16.90 5.60 0.09 -7.65 16 6 N -0.57 -9.00 2.12 -120.74 -0.26 -9.26 16 7 C 0.12 2.26 4.73 -4.05 -0.02 2.24 16 8 C -0.07 -1.54 0.60 -154.50 -0.09 -1.64 16 9 C -0.12 -2.43 7.25 37.16 0.27 -2.16 16 10 C -0.12 -2.39 7.10 37.16 0.26 -2.13 16 11 C 0.04 0.96 4.04 -27.89 -0.11 0.84 16 12 C -0.51 -13.97 7.65 -34.44 -0.26 -14.24 16 13 H 0.06 1.57 5.68 -52.49 -0.30 1.28 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 16 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 20 C 0.70 10.77 6.64 -88.02 -0.58 10.19 16 21 O -0.53 -9.47 13.21 5.34 0.07 -9.40 16 22 N -0.60 -6.93 3.07 -164.83 -0.51 -7.44 16 23 C 0.10 0.93 6.81 -67.93 -0.46 0.47 16 24 C -0.18 -1.81 9.83 -26.73 -0.26 -2.07 16 25 C -0.19 -1.73 10.40 -26.73 -0.28 -2.01 16 26 H 0.08 0.47 8.13 -51.93 -0.42 0.04 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.09 1.68 7.86 -51.93 -0.41 1.27 16 30 H 0.09 1.60 8.00 -51.93 -0.42 1.19 16 31 H 0.06 1.39 6.62 -51.93 -0.34 1.04 16 32 H 0.02 0.39 6.21 -51.93 -0.32 0.06 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.05 1.12 8.10 -51.93 -0.42 0.70 16 35 H 0.02 0.43 6.18 -51.93 -0.32 0.11 16 36 H 0.06 1.33 6.62 -51.93 -0.34 0.99 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.13 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.13 1.73 5.50 -51.93 -0.29 1.45 16 42 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 348.13 15.07 5.25 5.25 Total: -1.00 -32.07 348.13 -8.21 -40.27 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.94 Total: -0.71 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -1.63 Total: -1.74 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: -0.03 Total: -42.76 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: 0.17 Total: -17.05 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.07 -8.21 -40.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348958862.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.062 kcal (2) G-P(sol) polarization free energy of solvation -32.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds