Wall clock time and date at job start Tue Mar 31 2020 07:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.53592 * 2 1 4 4 C 1.51577 * 110.89948 * 237.16822 * 2 1 3 5 5 O 1.21230 * 127.15788 * 61.57931 * 4 2 1 6 6 N 1.34774 * 105.68468 * 241.65290 * 4 2 1 7 7 C 1.46492 * 124.17786 * 179.97438 * 6 4 2 8 8 C 1.52995 * 109.47395 * 269.70235 * 7 6 4 9 9 C 1.53008 * 109.47410 * 59.99690 * 8 7 6 10 10 C 1.53007 * 109.46927 * 300.00053 * 8 7 6 11 11 C 1.52997 * 109.47600 * 179.97438 * 8 7 6 12 12 C 1.50694 * 109.47460 * 179.97438 * 11 8 7 13 13 H 1.08002 * 120.00179 * 359.97438 * 12 11 8 14 14 C 1.37879 * 120.00472 * 180.02562 * 12 11 8 15 15 N 1.31514 * 119.99350 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00608 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47326 * 270.00340 * 16 14 12 18 18 H 1.48506 * 109.46545 * 30.00090 * 16 14 12 19 19 H 1.48498 * 109.47210 * 149.99801 * 16 14 12 20 20 C 1.33791 * 111.64333 * 359.65981 * 6 4 2 21 21 O 1.21534 * 123.76949 * 180.23282 * 20 6 4 22 22 N 1.34526 * 112.45697 * 0.22738 * 20 6 4 23 23 C 1.46503 * 126.68836 * 180.02562 * 22 20 6 24 24 C 1.53001 * 117.49731 * 8.60000 * 23 22 20 25 25 C 1.52999 * 117.49950 * 299.97561 * 23 22 20 26 26 H 1.08998 * 109.47334 * 297.18257 * 1 2 3 27 27 H 1.08999 * 109.47020 * 57.17644 * 1 2 3 28 28 H 1.08998 * 109.46966 * 177.17417 * 1 2 3 29 29 H 1.09002 * 109.47526 * 149.69813 * 7 6 4 30 30 H 1.09006 * 109.47127 * 29.69841 * 7 6 4 31 31 H 1.08993 * 109.47049 * 180.02562 * 9 8 7 32 32 H 1.09001 * 109.46762 * 300.00479 * 9 8 7 33 33 H 1.08999 * 109.46696 * 59.99877 * 9 8 7 34 34 H 1.09002 * 109.46630 * 299.99586 * 10 8 7 35 35 H 1.09001 * 109.46852 * 59.99769 * 10 8 7 36 36 H 1.08998 * 109.46963 * 179.97438 * 10 8 7 37 37 H 1.09005 * 109.46800 * 60.00280 * 11 8 7 38 38 H 1.08998 * 109.47382 * 300.00079 * 11 8 7 39 39 H 0.97005 * 119.99661 * 179.97438 * 15 14 12 40 40 H 1.09003 * 115.55010 * 154.31045 * 23 22 20 41 41 H 1.08994 * 117.50391 * 0.02562 * 24 23 22 42 42 H 1.09006 * 117.49253 * 145.02400 * 24 23 22 43 43 H 1.08997 * 117.50261 * 214.97459 * 25 23 22 44 44 H 1.08997 * 117.49928 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0208 0.0000 4 6 2.0707 -0.7677 -1.1899 5 8 1.9024 -0.5136 -2.3632 6 7 2.7763 -1.7927 -0.6721 7 6 3.4775 -2.7976 -1.4748 8 6 2.5379 -3.9717 -1.7566 9 6 1.3120 -3.4713 -2.5233 10 6 2.0916 -4.5967 -0.4332 11 6 3.2701 -5.0210 -2.5955 12 6 2.3448 -6.1777 -2.8725 13 1 1.3355 -6.1659 -2.4883 14 6 2.7869 -7.2517 -3.6156 15 7 4.0161 -7.2663 -4.0830 16 14 1.6402 -8.6858 -3.9584 17 1 1.7741 -9.6959 -2.8782 18 1 0.2385 -8.1977 -4.0087 19 1 1.9961 -9.3038 -5.2609 20 6 2.7627 -1.7751 0.6657 21 8 3.3323 -2.5957 1.3579 22 7 2.0482 -0.7474 1.1588 23 6 1.8288 -0.4327 2.5727 24 6 2.6286 -1.2287 3.6060 25 6 1.1310 -1.4893 3.4316 26 1 -0.3634 0.4694 0.9141 27 1 -0.3633 0.5570 -0.8636 28 1 -0.3633 -1.0264 -0.0507 29 1 4.3509 -3.1542 -0.9286 30 1 3.7954 -2.3523 -2.4176 31 1 0.6425 -4.3077 -2.7236 32 1 0.7902 -2.7236 -1.9259 33 1 1.6300 -3.0260 -3.4660 34 1 2.9650 -4.9533 0.1129 35 1 1.5698 -3.8489 0.1640 36 1 1.4219 -5.4329 -0.6340 37 1 4.1436 -5.3777 -2.0496 38 1 3.5877 -4.5755 -3.5382 39 1 4.3273 -8.0220 -4.6055 40 1 1.6203 0.6140 2.7945 41 1 3.3183 -1.9861 3.2339 42 1 2.9466 -0.7055 4.5079 43 1 0.4640 -1.1378 4.2188 44 1 0.8349 -2.4184 2.9447 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348958862.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:54 Heat of formation + Delta-G solvation = -37.130773 kcal Electronic energy + Delta-G solvation = -25400.110961 eV Core-core repulsion = 21932.607500 eV Total energy + Delta-G solvation = -3467.503461 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.59296 -39.94354 -39.00145 -37.67289 -37.16220 -35.11518 -34.05771 -31.27028 -29.31170 -28.45284 -28.14987 -25.82933 -25.23531 -24.00390 -23.26847 -22.55788 -20.88023 -19.87705 -18.50730 -18.26913 -18.03647 -17.40795 -17.10319 -16.60507 -16.21830 -15.64640 -15.60867 -15.39449 -15.09890 -15.02085 -14.50653 -14.22903 -14.02361 -13.94550 -13.59888 -13.34732 -12.91582 -12.86818 -12.77454 -12.67557 -12.60611 -12.47637 -12.42999 -12.17214 -12.07169 -11.75954 -11.56241 -11.35155 -11.24485 -11.05066 -10.96473 -10.53763 -10.50815 -9.69828 -8.16870 -6.24312 0.60728 1.03096 1.39472 1.40051 1.50565 1.88988 1.95808 2.41941 2.90279 3.00562 3.17176 3.58353 3.85674 3.90756 3.93051 3.97614 4.06062 4.08762 4.15366 4.29100 4.37891 4.47882 4.62598 4.64939 4.73612 4.77002 4.82480 4.87294 4.97391 5.04429 5.08438 5.18313 5.19761 5.31180 5.34765 5.36393 5.38984 5.48344 5.60684 5.71389 5.84349 6.17487 6.27344 6.38367 6.87978 7.06591 7.42678 8.95478 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021911 B = 0.004422 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.598405 B = 6330.747093 C = 6788.556515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.104 3.896 3 H 0.164 0.836 4 C 0.514 3.486 5 O -0.491 6.491 6 N -0.574 5.574 7 C 0.133 3.867 8 C -0.069 4.069 9 C -0.107 4.107 10 C -0.100 4.100 11 C 0.046 3.954 12 C -0.518 4.518 13 H 0.063 0.937 14 C 0.000 4.000 15 N -0.934 5.934 16 Si 0.957 3.043 17 H -0.276 1.276 18 H -0.264 1.264 19 H -0.284 1.284 20 C 0.692 3.308 21 O -0.565 6.565 22 N -0.592 5.592 23 C 0.108 3.892 24 C -0.197 4.197 25 C -0.186 4.186 26 H 0.110 0.890 27 H 0.093 0.907 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.051 0.949 32 H 0.041 0.959 33 H 0.042 0.958 34 H 0.036 0.964 35 H 0.037 0.963 36 H 0.048 0.952 37 H -0.009 1.009 38 H -0.005 1.005 39 H 0.261 0.739 40 H 0.184 0.816 41 H 0.090 0.910 42 H 0.127 0.873 43 H 0.133 0.867 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.113 20.108 14.778 26.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.002 4.002 3 H 0.181 0.819 4 C 0.303 3.697 5 O -0.362 6.362 6 N -0.318 5.318 7 C 0.012 3.988 8 C -0.070 4.070 9 C -0.164 4.164 10 C -0.157 4.157 11 C 0.008 3.992 12 C -0.556 4.556 13 H 0.081 0.919 14 C -0.197 4.197 15 N -0.575 5.575 16 Si 0.782 3.218 17 H -0.201 1.201 18 H -0.188 1.188 19 H -0.209 1.209 20 C 0.395 3.605 21 O -0.441 6.441 22 N -0.329 5.329 23 C 0.007 3.993 24 C -0.235 4.235 25 C -0.225 4.225 26 H 0.128 0.872 27 H 0.111 0.889 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.010 0.990 38 H 0.013 0.987 39 H 0.070 0.930 40 H 0.201 0.799 41 H 0.108 0.892 42 H 0.145 0.855 43 H 0.151 0.849 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.772 19.708 14.485 25.663 hybrid contribution 0.187 -1.557 -0.726 1.728 sum -7.585 18.151 13.759 24.006 Atomic orbital electron populations 1.21955 0.88771 1.03221 1.06057 1.22342 0.98889 0.98444 0.80520 0.81943 1.21537 0.76968 0.80454 0.90745 1.90792 1.57567 1.69954 1.17922 1.46564 1.49215 1.28120 1.07949 1.21706 0.94808 0.87512 0.94782 1.20852 0.95801 0.94094 0.96245 1.21565 0.96890 0.99345 0.98628 1.21492 1.00072 0.99183 0.94996 1.18909 0.94507 0.92654 0.93127 1.21507 0.98932 1.03182 1.31947 0.91900 1.25878 0.96582 1.01322 0.95919 1.70097 1.17985 1.32090 1.37303 0.85567 0.79450 0.79321 0.77462 1.20139 1.18803 1.20942 1.16129 0.80385 0.82554 0.81418 1.90885 1.49971 1.42526 1.60727 1.47288 1.51781 1.27412 1.06429 1.21887 1.05485 0.98789 0.73157 1.23644 0.95600 1.03767 1.00472 1.23427 0.95772 1.00108 1.03181 0.87156 0.88852 0.93595 0.89911 0.89305 0.93019 0.94030 0.93926 0.94497 0.94394 0.93279 0.99028 0.98700 0.92994 0.79896 0.89211 0.85540 0.84862 0.91586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.48 71.98 0.68 -1.08 16 2 C 0.10 1.72 4.03 44.37 0.18 1.90 16 3 H 0.16 1.50 8.14 -2.39 -0.02 1.49 16 4 C 0.51 14.03 6.02 87.94 0.53 14.56 16 5 O -0.49 -15.95 16.90 -2.88 -0.05 -15.99 16 6 N -0.57 -18.19 2.12 -773.15 -1.64 -19.83 16 7 C 0.13 5.04 4.73 86.38 0.41 5.45 16 8 C -0.07 -2.96 0.60 -52.18 -0.03 -2.99 16 9 C -0.11 -4.36 7.25 71.98 0.52 -3.84 16 10 C -0.10 -4.23 7.10 71.98 0.51 -3.72 16 11 C 0.05 2.43 4.04 29.85 0.12 2.55 16 12 C -0.52 -29.29 7.65 25.60 0.20 -29.09 16 13 H 0.06 3.44 5.68 -2.91 -0.02 3.42 16 14 C 0.00 0.02 5.46 84.66 0.46 0.48 16 15 N -0.93 -57.52 13.29 21.45 0.28 -57.23 16 16 Si 0.96 45.14 29.54 68.60 2.03 47.17 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 19 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 20 C 0.69 20.90 6.64 179.44 1.19 22.10 16 21 O -0.57 -20.71 13.21 -3.82 -0.05 -20.76 16 22 N -0.59 -12.00 3.07 -793.83 -2.44 -14.44 16 23 C 0.11 1.49 6.81 44.99 0.31 1.80 16 24 C -0.20 -3.49 9.83 30.60 0.30 -3.19 16 25 C -0.19 -2.90 10.40 30.60 0.32 -2.58 16 26 H 0.11 0.69 8.13 -2.39 -0.02 0.67 16 27 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.08 3.24 7.86 -2.39 -0.02 3.22 16 30 H 0.09 3.33 8.00 -2.38 -0.02 3.31 16 31 H 0.05 2.22 6.62 -2.39 -0.02 2.20 16 32 H 0.04 1.50 6.21 -2.39 -0.01 1.48 16 33 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.04 1.64 8.10 -2.39 -0.02 1.62 16 35 H 0.04 1.46 6.18 -2.39 -0.01 1.44 16 36 H 0.05 2.16 6.62 -2.39 -0.02 2.14 16 37 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 38 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 39 H 0.26 15.21 8.31 -92.70 -0.77 14.43 16 40 H 0.18 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.09 2.43 5.50 -2.39 -0.01 2.42 16 42 H 0.13 1.49 8.14 -2.38 -0.02 1.47 16 43 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -73.70 348.13 4.82 -68.88 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 0.99 Total: 9.87 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 5.70 Total: 2.34 kcal Atomic # 7 Polarization: -87.70 SS G_CDS: -3.80 Total: -91.50 kcal Atomic # 8 Polarization: -36.65 SS G_CDS: -0.10 Total: -36.75 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -73.70 4.82 -68.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348958862.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.749 kcal (2) G-P(sol) polarization free energy of solvation -73.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds