Wall clock time and date at job start Tue Mar 31 2020 07:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47107 * 2 1 4 4 C 1.46759 * 124.34960 * 270.04788 * 3 2 1 5 5 C 1.54479 * 105.47540 * 162.96339 * 4 3 2 6 6 H 1.08996 * 110.99678 * 267.28147 * 5 4 3 7 7 C 1.50704 * 110.97091 * 143.53326 * 5 4 3 8 8 O 1.21281 * 119.99674 * 340.80096 * 7 5 4 9 9 N 1.34777 * 119.99784 * 160.80117 * 7 5 4 10 10 C 1.46499 * 119.99499 * 184.57550 * 9 7 5 11 11 C 1.50700 * 109.46709 * 269.99486 * 10 9 7 12 12 H 1.07999 * 120.00523 * 0.02562 * 11 10 9 13 13 C 1.37883 * 119.99686 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99924 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00048 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.46966 * 89.99800 * 15 13 11 17 17 H 1.48497 * 109.47289 * 209.99783 * 15 13 11 18 18 H 1.48499 * 109.47160 * 329.99886 * 15 13 11 19 19 C 1.46500 * 119.99995 * 4.57081 * 9 7 5 20 20 C 1.52994 * 109.47372 * 264.38955 * 19 9 7 21 21 C 1.52994 * 117.50086 * 116.25560 * 20 19 9 22 22 C 1.53003 * 117.49880 * 184.91575 * 20 19 9 23 23 C 1.54629 * 101.76490 * 25.41529 * 5 4 3 24 24 C 1.34415 * 124.35053 * 90.02238 * 3 2 1 25 25 O 1.21282 * 124.94080 * 0.39124 * 24 3 2 26 26 H 1.08996 * 109.47413 * 300.00447 * 1 2 3 27 27 H 1.09005 * 109.46710 * 60.00355 * 1 2 3 28 28 H 1.08997 * 109.46740 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47354 * 239.99887 * 2 1 3 30 30 H 1.08997 * 109.46948 * 119.99856 * 2 1 3 31 31 H 1.09002 * 110.24719 * 43.95702 * 4 3 2 32 32 H 1.09002 * 110.24727 * 281.96407 * 4 3 2 33 33 H 1.08991 * 109.47307 * 29.99855 * 10 9 7 34 34 H 1.09005 * 109.46784 * 149.99990 * 10 9 7 35 35 H 0.96999 * 120.00088 * 180.02562 * 14 13 11 36 36 H 1.09005 * 109.46768 * 144.38564 * 19 9 7 37 37 H 1.08997 * 109.47071 * 24.39540 * 19 9 7 38 38 H 1.08998 * 115.54899 * 330.58342 * 20 19 9 39 39 H 1.09001 * 117.50290 * 215.00381 * 21 20 19 40 40 H 1.09003 * 117.50031 * 0.02562 * 21 20 19 41 41 H 1.08994 * 117.49920 * 359.97438 * 22 20 19 42 42 H 1.09003 * 117.49602 * 144.97201 * 22 20 19 43 43 H 1.08992 * 110.49041 * 93.88380 * 23 5 4 44 44 H 1.08998 * 110.48759 * 216.52890 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2934 2.1623 -1.2117 5 6 2.3518 3.6348 -0.7484 6 1 1.3771 4.1132 -0.8439 7 6 3.4019 4.3994 -1.5125 8 8 4.2843 3.8029 -2.0927 9 7 3.3605 5.7460 -1.5511 10 6 4.3205 6.4849 -2.3748 11 6 5.5475 6.7975 -1.5576 12 1 5.6065 6.4774 -0.5278 13 6 6.5948 7.4923 -2.1246 14 7 7.6658 7.7647 -1.4116 15 14 6.4926 8.0467 -3.9055 16 1 5.8860 9.4007 -3.9684 17 1 7.8569 8.0878 -4.4903 18 1 5.6533 7.0922 -4.6736 19 6 2.3554 6.4706 -0.7695 20 6 1.1492 6.7855 -1.6565 21 6 -0.1892 6.1457 -1.2822 22 6 0.0342 7.6428 -1.0544 23 6 2.7502 3.4822 0.7378 24 6 2.2716 2.0962 1.1097 25 8 2.1354 1.6894 2.2442 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.4919 2.0267 -1.9379 32 1 3.2489 1.8646 -1.6436 33 1 4.6022 5.8793 -3.2361 34 1 3.8656 7.4144 -2.7173 35 1 8.4025 8.2538 -1.8103 36 1 2.7856 7.4005 -0.3975 37 1 2.0368 5.8555 0.0720 38 1 1.3664 6.9145 -2.7168 39 1 -0.8526 5.8537 -2.0963 40 1 -0.2106 5.5008 -0.4038 41 1 0.1597 7.9821 -0.0262 42 1 -0.4820 8.3361 -1.7186 43 1 3.8316 3.5559 0.8524 44 1 2.2490 4.2349 1.3464 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349433572.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:05 Heat of formation + Delta-G solvation = -40.674154 kcal Electronic energy + Delta-G solvation = -24638.322642 eV Core-core repulsion = 21170.665528 eV Total energy + Delta-G solvation = -3467.657114 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.79067 -39.10123 -37.37549 -36.27442 -34.63376 -33.93090 -32.48172 -30.03309 -28.45777 -27.67371 -26.43429 -24.17206 -23.01767 -22.42221 -21.64816 -20.69702 -19.43400 -18.49625 -17.41751 -16.95019 -16.81633 -15.83685 -15.65338 -15.29924 -14.80846 -14.64028 -14.15439 -14.03592 -13.82917 -13.80813 -13.37913 -13.04059 -12.94532 -12.65433 -12.41419 -12.26927 -12.04009 -11.69895 -11.66560 -11.56046 -11.41119 -11.25299 -11.14958 -10.97000 -10.58938 -10.49600 -10.11067 -9.95471 -9.88709 -9.56937 -9.13383 -8.75262 -8.62226 -7.84929 -6.11371 -4.10520 2.57443 2.87266 3.11863 3.24147 3.32324 3.35342 3.55670 3.83167 4.27764 4.36576 4.46265 4.65696 4.80318 4.85481 4.89994 4.97025 5.00750 5.06226 5.18067 5.19190 5.27572 5.33653 5.40914 5.53575 5.56401 5.59163 5.65580 5.72737 5.81869 5.85225 5.93146 5.97028 5.99269 6.07054 6.30964 6.46793 6.60446 6.89076 7.04225 7.22579 7.56730 8.11315 8.14857 8.41953 8.79833 8.92555 9.48341 11.01952 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015680 B = 0.004749 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.325127 B = 5894.320065 C = 6791.499182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.121 3.879 3 N -0.619 5.619 4 C 0.115 3.885 5 C -0.126 4.126 6 H 0.110 0.890 7 C 0.521 3.479 8 O -0.531 6.531 9 N -0.584 5.584 10 C 0.217 3.783 11 C -0.529 4.529 12 H 0.075 0.925 13 C 0.073 3.927 14 N -0.896 5.896 15 Si 0.874 3.126 16 H -0.275 1.275 17 H -0.284 1.284 18 H -0.264 1.264 19 C 0.138 3.862 20 C -0.168 4.168 21 C -0.186 4.186 22 C -0.174 4.174 23 C -0.142 4.142 24 C 0.523 3.477 25 O -0.536 6.536 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.040 0.960 34 H 0.027 0.973 35 H 0.265 0.735 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.114 0.886 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.966 -7.867 -0.274 19.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.000 4.000 3 N -0.353 5.353 4 C -0.008 4.008 5 C -0.148 4.148 6 H 0.128 0.872 7 C 0.307 3.693 8 O -0.408 6.408 9 N -0.314 5.314 10 C 0.097 3.903 11 C -0.567 4.567 12 H 0.093 0.907 13 C -0.129 4.129 14 N -0.534 5.534 15 Si 0.700 3.300 16 H -0.201 1.201 17 H -0.210 1.210 18 H -0.189 1.189 19 C 0.014 3.986 20 C -0.187 4.187 21 C -0.223 4.223 22 C -0.212 4.212 23 C -0.182 4.182 24 C 0.311 3.689 25 O -0.413 6.413 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.058 0.942 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.127 0.873 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.132 0.868 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -17.377 -8.379 -0.017 19.292 hybrid contribution 0.007 0.557 -0.989 1.135 sum -17.370 -7.822 -1.006 19.077 Atomic orbital electron populations 1.22160 0.95846 1.02218 1.02472 1.21326 0.94234 0.81234 1.03234 1.48334 1.65757 1.13819 1.07392 1.22041 1.03317 0.88604 0.86810 1.22322 1.00782 0.96230 0.95501 0.87184 1.19776 0.85436 0.82664 0.81464 1.90691 1.36227 1.68058 1.45785 1.47816 1.32270 1.04954 1.46354 1.19685 0.87980 0.91142 0.91533 1.21298 0.99529 1.35978 0.99938 0.90678 1.24849 0.95015 0.95447 0.97612 1.69892 1.06513 1.40335 1.36687 0.86885 0.77961 0.79363 0.85746 1.20097 1.20959 1.18894 1.21134 0.86943 0.98333 0.92199 1.22923 0.90049 1.04469 1.01254 1.23071 1.00034 0.96014 1.03189 1.22920 1.02582 0.93436 1.02263 1.22325 1.05007 0.95911 0.95007 1.20809 0.76085 0.87684 0.84307 1.90705 1.53819 1.75645 1.21097 0.92249 0.92375 0.91504 0.90235 0.90028 0.90193 0.88638 0.94174 0.95491 0.92535 0.89096 0.90897 0.87349 0.89069 0.88883 0.88572 0.88903 0.86777 0.87495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 10.24 37.16 0.38 -1.03 16 2 C 0.12 1.20 6.65 -4.04 -0.03 1.17 16 3 N -0.62 -7.63 2.93 -172.41 -0.51 -8.14 16 4 C 0.12 1.40 6.83 -3.12 -0.02 1.38 16 5 C -0.13 -1.67 2.48 -90.14 -0.22 -1.89 16 6 H 0.11 1.20 5.48 -51.93 -0.28 0.92 16 7 C 0.52 9.50 6.81 -10.98 -0.07 9.43 16 8 O -0.53 -11.92 15.21 5.56 0.08 -11.83 16 9 N -0.58 -10.89 2.46 -175.06 -0.43 -11.32 16 10 C 0.22 4.98 4.22 -5.19 -0.02 4.95 16 11 C -0.53 -14.61 9.94 -34.44 -0.34 -14.95 16 12 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 13 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 14 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 15 Si 0.87 20.93 27.47 -169.99 -4.67 16.26 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.26 -6.13 6.54 56.52 0.37 -5.76 16 19 C 0.14 1.98 5.32 -4.04 -0.02 1.96 16 20 C -0.17 -2.00 5.89 -90.62 -0.53 -2.54 16 21 C -0.19 -1.76 9.23 -26.70 -0.25 -2.01 16 22 C -0.17 -1.71 10.25 -26.69 -0.27 -1.98 16 23 C -0.14 -1.93 5.95 -26.74 -0.16 -2.09 16 24 C 0.52 7.68 8.02 -10.86 -0.09 7.59 16 25 O -0.54 -9.52 17.59 5.56 0.10 -9.42 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.87 7.92 -51.93 -0.41 0.46 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.10 1.35 6.86 -51.93 -0.36 0.99 16 33 H 0.04 1.00 6.55 -51.93 -0.34 0.66 16 34 H 0.03 0.58 7.50 -51.93 -0.39 0.20 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.09 1.41 8.11 -51.93 -0.42 0.98 16 37 H 0.07 0.88 5.09 -51.93 -0.26 0.62 16 38 H 0.11 1.43 8.14 -51.93 -0.42 1.00 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.09 0.81 7.44 -51.93 -0.39 0.42 16 41 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.11 1.76 7.89 -51.93 -0.41 1.35 16 44 H 0.11 1.25 7.32 -51.93 -0.38 0.87 16 LS Contribution 357.49 15.07 5.39 5.39 Total: -1.00 -34.01 357.49 -8.05 -42.06 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -7.04 Total: 1.38 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -1.75 Total: 1.99 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: -0.16 Total: -45.83 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: 0.18 Total: -21.25 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.01 -8.05 -42.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349433572.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.388 kcal (2) G-P(sol) polarization free energy of solvation -34.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds