Wall clock time and date at job start Tue Mar 31 2020 07:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47107 * 2 1 4 4 C 1.46759 * 124.34960 * 270.04788 * 3 2 1 5 5 C 1.54479 * 105.47540 * 162.96339 * 4 3 2 6 6 H 1.08996 * 110.99678 * 267.28147 * 5 4 3 7 7 C 1.50704 * 110.97091 * 143.53326 * 5 4 3 8 8 O 1.21281 * 119.99674 * 340.80096 * 7 5 4 9 9 N 1.34777 * 119.99784 * 160.80117 * 7 5 4 10 10 C 1.46499 * 119.99499 * 184.57550 * 9 7 5 11 11 C 1.50700 * 109.46709 * 269.99486 * 10 9 7 12 12 H 1.07999 * 120.00523 * 0.02562 * 11 10 9 13 13 C 1.37883 * 119.99686 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99924 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00048 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.46966 * 89.99800 * 15 13 11 17 17 H 1.48497 * 109.47289 * 209.99783 * 15 13 11 18 18 H 1.48499 * 109.47160 * 329.99886 * 15 13 11 19 19 C 1.46500 * 119.99995 * 4.57081 * 9 7 5 20 20 C 1.52994 * 109.47372 * 264.38955 * 19 9 7 21 21 C 1.52994 * 117.50086 * 116.25560 * 20 19 9 22 22 C 1.53003 * 117.49880 * 184.91575 * 20 19 9 23 23 C 1.54629 * 101.76490 * 25.41529 * 5 4 3 24 24 C 1.34415 * 124.35053 * 90.02238 * 3 2 1 25 25 O 1.21282 * 124.94080 * 0.39124 * 24 3 2 26 26 H 1.08996 * 109.47413 * 300.00447 * 1 2 3 27 27 H 1.09005 * 109.46710 * 60.00355 * 1 2 3 28 28 H 1.08997 * 109.46740 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47354 * 239.99887 * 2 1 3 30 30 H 1.08997 * 109.46948 * 119.99856 * 2 1 3 31 31 H 1.09002 * 110.24719 * 43.95702 * 4 3 2 32 32 H 1.09002 * 110.24727 * 281.96407 * 4 3 2 33 33 H 1.08991 * 109.47307 * 29.99855 * 10 9 7 34 34 H 1.09005 * 109.46784 * 149.99990 * 10 9 7 35 35 H 0.96999 * 120.00088 * 180.02562 * 14 13 11 36 36 H 1.09005 * 109.46768 * 144.38564 * 19 9 7 37 37 H 1.08997 * 109.47071 * 24.39540 * 19 9 7 38 38 H 1.08998 * 115.54899 * 330.58342 * 20 19 9 39 39 H 1.09001 * 117.50290 * 215.00381 * 21 20 19 40 40 H 1.09003 * 117.50031 * 0.02562 * 21 20 19 41 41 H 1.08994 * 117.49920 * 359.97438 * 22 20 19 42 42 H 1.09003 * 117.49602 * 144.97201 * 22 20 19 43 43 H 1.08992 * 110.49041 * 93.88380 * 23 5 4 44 44 H 1.08998 * 110.48759 * 216.52890 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2934 2.1623 -1.2117 5 6 2.3518 3.6348 -0.7484 6 1 1.3771 4.1132 -0.8439 7 6 3.4019 4.3994 -1.5125 8 8 4.2843 3.8029 -2.0927 9 7 3.3605 5.7460 -1.5511 10 6 4.3205 6.4849 -2.3748 11 6 5.5475 6.7975 -1.5576 12 1 5.6065 6.4774 -0.5278 13 6 6.5948 7.4923 -2.1246 14 7 7.6658 7.7647 -1.4116 15 14 6.4926 8.0467 -3.9055 16 1 5.8860 9.4007 -3.9684 17 1 7.8569 8.0878 -4.4903 18 1 5.6533 7.0922 -4.6736 19 6 2.3554 6.4706 -0.7695 20 6 1.1492 6.7855 -1.6565 21 6 -0.1892 6.1457 -1.2822 22 6 0.0342 7.6428 -1.0544 23 6 2.7502 3.4822 0.7378 24 6 2.2716 2.0962 1.1097 25 8 2.1354 1.6894 2.2442 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.4919 2.0267 -1.9379 32 1 3.2489 1.8646 -1.6436 33 1 4.6022 5.8793 -3.2361 34 1 3.8656 7.4144 -2.7173 35 1 8.4025 8.2538 -1.8103 36 1 2.7856 7.4005 -0.3975 37 1 2.0368 5.8555 0.0720 38 1 1.3664 6.9145 -2.7168 39 1 -0.8526 5.8537 -2.0963 40 1 -0.2106 5.5008 -0.4038 41 1 0.1597 7.9821 -0.0262 42 1 -0.4820 8.3361 -1.7186 43 1 3.8316 3.5559 0.8524 44 1 2.2490 4.2349 1.3464 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349433572.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:05 Heat of formation + Delta-G solvation = -62.656822 kcal Electronic energy + Delta-G solvation = -24639.275882 eV Core-core repulsion = 21170.665528 eV Total energy + Delta-G solvation = -3468.610354 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.98381 -40.43837 -38.41551 -37.46774 -36.14249 -34.98276 -34.46106 -31.20044 -30.03914 -28.80768 -27.71716 -25.53014 -24.14364 -23.19418 -23.07670 -21.70596 -20.51472 -19.86588 -19.05972 -18.62312 -17.91961 -17.19768 -16.92061 -16.49382 -16.13108 -15.86968 -15.62881 -15.04798 -14.93622 -14.75909 -14.69220 -14.46794 -14.22627 -14.12344 -13.76481 -13.47116 -13.23641 -12.98293 -12.82874 -12.66010 -12.48549 -12.42584 -12.30452 -12.19536 -12.03089 -11.98206 -11.75628 -11.24459 -11.09282 -10.87859 -10.80068 -10.55346 -9.78760 -9.44036 -8.31492 -6.36374 1.33652 1.37871 1.40923 1.47894 1.63876 1.90784 2.22000 2.32994 2.96916 3.02995 3.15761 3.38121 3.58770 3.80557 3.92178 4.04819 4.06849 4.13145 4.19850 4.25633 4.33727 4.47171 4.51375 4.54545 4.70239 4.74266 4.76363 4.82735 4.87233 4.89278 4.95070 4.96636 4.99284 5.12877 5.30288 5.35867 5.37780 5.47933 5.53497 5.61679 5.98246 6.24693 6.64404 6.67115 7.03034 7.22323 7.36639 8.85531 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015680 B = 0.004749 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.325127 B = 5894.320065 C = 6791.499182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.113 3.887 3 N -0.610 5.610 4 C 0.118 3.882 5 C -0.108 4.108 6 H 0.144 0.856 7 C 0.516 3.484 8 O -0.581 6.581 9 N -0.589 5.589 10 C 0.227 3.773 11 C -0.534 4.534 12 H 0.029 0.971 13 C 0.011 3.989 14 N -0.947 5.947 15 Si 0.946 3.054 16 H -0.253 1.253 17 H -0.285 1.285 18 H -0.251 1.251 19 C 0.136 3.864 20 C -0.188 4.188 21 C -0.167 4.167 22 C -0.167 4.167 23 C -0.141 4.141 24 C 0.520 3.480 25 O -0.572 6.572 26 H 0.041 0.959 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.023 0.977 34 H 0.047 0.953 35 H 0.267 0.733 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.088 0.912 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.389 -8.028 -1.805 22.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.008 4.008 3 N -0.343 5.343 4 C -0.004 4.004 5 C -0.130 4.130 6 H 0.162 0.838 7 C 0.304 3.696 8 O -0.461 6.461 9 N -0.318 5.318 10 C 0.105 3.895 11 C -0.572 4.572 12 H 0.047 0.953 13 C -0.187 4.187 14 N -0.587 5.587 15 Si 0.769 3.231 16 H -0.178 1.178 17 H -0.211 1.211 18 H -0.175 1.175 19 C 0.014 3.986 20 C -0.207 4.207 21 C -0.204 4.204 22 C -0.204 4.204 23 C -0.181 4.181 24 C 0.308 3.692 25 O -0.452 6.452 26 H 0.060 0.940 27 H 0.089 0.911 28 H 0.105 0.895 29 H 0.120 0.880 30 H 0.088 0.912 31 H 0.135 0.865 32 H 0.092 0.908 33 H 0.041 0.959 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.106 0.894 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -20.860 -8.543 -1.549 22.595 hybrid contribution 1.111 0.562 -0.425 1.315 sum -19.750 -7.981 -1.974 21.392 Atomic orbital electron populations 1.22093 0.94116 1.03491 1.02155 1.21602 0.95630 0.79761 1.03810 1.48443 1.64579 1.14629 1.06663 1.22062 1.03718 0.87535 0.87127 1.22234 1.00159 0.96531 0.94071 0.83815 1.20586 0.85715 0.82480 0.80862 1.90664 1.38468 1.69020 1.47986 1.47861 1.32293 1.05444 1.46224 1.19309 0.87357 0.92023 0.90831 1.21563 1.01773 1.35389 0.98514 0.95284 1.25844 0.94416 0.95590 1.02857 1.70058 1.07663 1.41836 1.39153 0.85737 0.78147 0.79968 0.79272 1.17750 1.21067 1.17532 1.21322 0.86805 0.97518 0.92993 1.22662 0.90060 1.07927 1.00073 1.23198 0.97422 0.95888 1.03866 1.23028 1.00632 0.94176 1.02604 1.22308 1.03647 0.96477 0.95701 1.20881 0.75918 0.88080 0.84291 1.90685 1.55627 1.76356 1.22504 0.93972 0.91137 0.89523 0.87955 0.91237 0.86505 0.90789 0.95857 0.93461 0.92387 0.90912 0.88542 0.88586 0.87655 0.87499 0.87952 0.87947 0.89363 0.85310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 10.24 71.98 0.74 -1.46 16 2 C 0.11 1.98 6.65 86.38 0.57 2.56 16 3 N -0.61 -13.99 2.93 -817.99 -2.40 -16.39 16 4 C 0.12 2.62 6.83 86.83 0.59 3.22 16 5 C -0.11 -2.67 2.48 -10.48 -0.03 -2.69 16 6 H 0.14 2.58 5.48 -2.39 -0.01 2.57 16 7 C 0.52 18.79 6.81 87.66 0.60 19.39 16 8 O -0.58 -26.81 15.21 -3.03 -0.05 -26.85 16 9 N -0.59 -21.96 2.46 -826.17 -2.03 -23.99 16 10 C 0.23 10.51 4.22 85.63 0.36 10.87 16 11 C -0.53 -30.63 9.94 25.60 0.25 -30.38 16 12 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 13 C 0.01 0.63 5.47 84.66 0.46 1.09 16 14 N -0.95 -59.49 13.96 21.45 0.30 -59.19 16 15 Si 0.95 43.46 27.47 68.60 1.88 45.35 16 16 H -0.25 -10.69 7.11 99.48 0.71 -9.99 16 17 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 18 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 19 C 0.14 3.74 5.32 86.38 0.46 4.20 16 20 C -0.19 -4.01 5.89 -10.80 -0.06 -4.07 16 21 C -0.17 -2.43 9.23 30.62 0.28 -2.15 16 22 C -0.17 -2.70 10.25 30.62 0.31 -2.39 16 23 C -0.14 -3.73 5.95 30.59 0.18 -3.55 16 24 C 0.52 14.87 8.02 87.90 0.71 15.58 16 25 O -0.57 -20.26 17.59 -3.04 -0.05 -20.32 16 26 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.07 1.41 7.92 -2.39 -0.02 1.39 16 31 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.07 2.04 6.86 -2.39 -0.02 2.03 16 33 H 0.02 1.17 6.55 -2.39 -0.02 1.15 16 34 H 0.05 2.00 7.50 -2.38 -0.02 1.98 16 35 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 36 H 0.07 2.25 8.11 -2.38 -0.02 2.23 16 37 H 0.10 2.13 5.09 -2.39 -0.01 2.12 16 38 H 0.10 2.32 8.14 -2.39 -0.02 2.31 16 39 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.11 1.30 7.44 -2.39 -0.02 1.28 16 41 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.09 2.84 7.89 -2.39 -0.02 2.82 16 44 H 0.13 2.79 7.32 -2.39 -0.02 2.77 16 Total: -1.00 -78.77 357.49 4.02 -74.75 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.93 Total: 16.45 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: 5.43 Total: 10.20 kcal Atomic # 7 Polarization: -95.44 SS G_CDS: -4.13 Total: -99.57 kcal Atomic # 8 Polarization: -47.07 SS G_CDS: -0.10 Total: -47.17 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.88 Total: 45.35 kcal Total: -78.77 4.02 -74.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349433572.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.098 kcal (2) G-P(sol) polarization free energy of solvation -78.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds