Wall clock time and date at job start Tue Mar 31 2020 07:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47438 * 2 1 4 4 C 1.53001 * 109.46969 * 240.00137 * 2 1 3 5 5 C 1.50710 * 109.46983 * 61.90895 * 4 2 1 6 6 H 1.07993 * 120.00034 * 5.17565 * 5 4 2 7 7 C 1.37879 * 119.99957 * 185.17569 * 5 4 2 8 8 N 1.31520 * 119.99658 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99946 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47336 * 59.99776 * 9 7 5 11 11 H 1.48496 * 109.47130 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46918 * 299.99761 * 9 7 5 13 13 N 1.46898 * 109.47363 * 120.00697 * 2 1 3 14 14 C 1.46951 * 111.00243 * 173.58047 * 13 2 1 15 15 C 1.53056 * 109.36638 * 183.18416 * 14 13 2 16 16 N 1.46949 * 109.36025 * 301.59440 * 15 14 13 17 17 C 1.46907 * 110.99632 * 183.18491 * 16 15 14 18 18 C 1.53000 * 109.47285 * 312.90394 * 17 16 15 19 19 F 1.39903 * 109.46922 * 66.79719 * 18 17 16 20 20 F 1.39901 * 109.46916 * 186.79732 * 18 17 16 21 21 F 1.39899 * 109.47048 * 306.79992 * 18 17 16 22 22 C 1.46955 * 110.88271 * 59.32501 * 16 15 14 23 23 H 1.09001 * 109.49293 * 60.63865 * 22 16 15 24 24 C 1.52999 * 109.50969 * 180.69571 * 22 16 15 25 25 C 1.46962 * 110.99443 * 297.37457 * 13 2 1 26 26 H 1.09004 * 109.47016 * 299.99321 * 1 2 3 27 27 H 1.08997 * 109.47572 * 59.99804 * 1 2 3 28 28 H 1.09000 * 109.47438 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47485 * 181.90811 * 4 2 1 30 30 H 1.09003 * 109.47472 * 301.91011 * 4 2 1 31 31 H 0.97003 * 119.99161 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.48886 * 303.15484 * 14 13 2 33 33 H 1.09001 * 109.49315 * 63.21664 * 14 13 2 34 34 H 1.08994 * 109.48704 * 61.56615 * 15 14 13 35 35 H 1.09004 * 109.48848 * 181.62956 * 15 14 13 36 36 H 1.08999 * 109.46751 * 72.90749 * 17 16 15 37 37 H 1.09002 * 109.47085 * 192.90348 * 17 16 15 38 38 H 1.08999 * 109.47127 * 179.97438 * 24 22 16 39 39 H 1.08998 * 109.46873 * 299.94136 * 24 22 16 40 40 H 1.09001 * 109.47028 * 59.94772 * 24 22 16 41 41 H 1.09004 * 109.48928 * 56.84811 * 25 13 2 42 42 H 1.08994 * 109.49368 * 296.78013 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5766 0.0161 -2.4793 6 1 1.0502 0.9539 -2.3805 7 6 1.8247 -0.5067 -3.7308 8 7 2.4653 -1.6490 -3.8511 9 14 1.2510 0.4076 -5.2554 10 1 1.8844 1.7500 -5.2953 11 1 1.6376 -0.3590 -6.4670 12 1 -0.2259 0.5581 -5.2158 13 7 2.0197 -0.6926 1.1993 14 6 3.4806 -0.8465 1.1590 15 6 3.9413 -1.6403 2.3839 16 7 3.5220 -0.9387 3.6051 17 6 4.0117 -1.6313 4.8045 18 6 3.7228 -3.1288 4.6824 19 9 4.4923 -3.6692 3.6465 20 9 4.0467 -3.7657 5.8852 21 9 2.3653 -3.3206 4.4039 22 6 2.0611 -0.7848 3.6455 23 1 1.5915 -1.7684 3.6390 24 6 1.6612 -0.0366 4.9187 25 6 1.6004 0.0090 2.4207 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.1294 -0.7510 -1.2324 30 1 1.6489 -1.7386 -1.2666 31 1 2.6401 -2.0165 -4.7316 32 1 3.7652 -1.3797 0.2519 33 1 3.9502 0.1371 1.1655 34 1 3.4931 -2.6336 2.3630 35 1 5.0275 -1.7308 2.3711 36 1 5.0862 -1.4752 4.9009 37 1 3.5064 -1.2344 5.6850 38 1 0.5776 0.0776 4.9478 39 1 1.9900 -0.6019 5.7907 40 1 2.1309 0.9470 4.9248 41 1 0.5142 0.0995 2.4334 42 1 2.0486 1.0024 2.4415 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351228282.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:41 Heat of formation + Delta-G solvation = -135.900531 kcal Electronic energy + Delta-G solvation = -25703.856967 eV Core-core repulsion = 21690.213787 eV Total energy + Delta-G solvation = -4013.643180 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.31552 -47.77788 -47.74339 -39.53262 -36.53937 -33.20489 -32.52367 -31.45458 -29.01789 -27.63308 -26.34432 -25.30205 -23.33592 -22.43659 -22.13174 -20.04596 -19.04871 -18.71115 -18.58526 -17.19668 -16.65484 -15.84237 -15.53748 -15.24141 -14.66423 -14.58314 -14.49012 -14.27540 -14.03724 -13.91803 -13.82730 -13.69453 -13.52829 -13.09764 -12.74160 -12.36893 -12.30462 -12.08568 -11.88100 -11.74298 -11.39122 -11.26812 -11.02403 -10.83915 -10.79191 -10.69523 -10.32033 -10.21411 -9.83212 -9.19037 -9.05958 -8.57905 -8.32341 -7.69914 -5.98935 -4.00513 2.64620 3.33529 3.38367 3.40225 3.41684 3.68910 3.86763 4.13890 4.33219 4.51734 4.71968 4.83648 5.03692 5.14152 5.30339 5.36841 5.44120 5.54781 5.61809 5.66719 5.70593 5.84306 5.94801 5.99569 6.15657 6.19894 6.32318 6.34867 6.40991 6.67967 6.74042 6.83538 6.94859 7.13576 7.53965 7.60607 7.79428 7.87254 8.07871 8.44300 9.05241 9.62506 11.12398 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.026920 B = 0.003890 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.850684 B = 7195.908083 C = 7793.736303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.087 3.913 3 H 0.026 0.974 4 C 0.030 3.970 5 C -0.517 4.517 6 H 0.054 0.946 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.537 5.537 14 C 0.056 3.944 15 C 0.038 3.962 16 N -0.516 5.516 17 C 0.009 3.991 18 C 0.413 3.587 19 F -0.180 7.180 20 F -0.191 7.191 21 F -0.179 7.179 22 C 0.057 3.943 23 H 0.076 0.924 24 C -0.147 4.147 25 C 0.062 3.938 26 H 0.030 0.970 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.015 0.985 30 H 0.028 0.972 31 H 0.261 0.739 32 H 0.098 0.902 33 H 0.036 0.964 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.210 0.293 20.054 20.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.020 4.020 3 H 0.044 0.956 4 C -0.007 4.007 5 C -0.556 4.556 6 H 0.073 0.927 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.262 5.262 14 C -0.072 4.072 15 C -0.089 4.089 16 N -0.239 5.239 17 C -0.122 4.122 18 C 0.356 3.644 19 F -0.161 7.161 20 F -0.173 7.173 21 F -0.160 7.160 22 C -0.051 4.051 23 H 0.094 0.906 24 C -0.205 4.205 25 C -0.067 4.067 26 H 0.049 0.951 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.033 0.967 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.116 0.884 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.253 0.158 19.872 19.999 hybrid contribution -0.243 0.149 -0.920 0.963 sum 2.010 0.307 18.952 19.060 Atomic orbital electron populations 1.21736 0.95253 1.01605 0.99988 1.21813 0.95092 0.95176 0.89930 0.95556 1.19213 0.95899 0.96357 0.89259 1.21141 1.36776 1.06796 0.90884 0.92736 1.24979 0.95304 0.94954 0.99004 1.69961 1.41107 1.18628 1.23571 0.86688 0.79170 0.79787 0.82529 1.20335 1.21327 1.20259 1.62253 1.10846 1.50917 1.02166 1.22207 0.88354 0.99156 0.97466 1.22783 1.00584 0.96947 0.88550 1.62451 1.13292 1.47199 1.00921 1.23892 1.05640 0.84086 0.98565 1.22393 0.74423 0.93990 0.73575 1.93187 1.75483 1.88604 1.58830 1.93168 1.92515 1.85093 1.46500 1.93128 1.33358 1.96154 1.93391 1.22209 0.86305 1.00691 0.95884 0.90590 1.21912 1.01785 1.00853 0.95934 1.22158 1.00404 0.95046 0.89044 0.95103 0.91458 0.92699 0.96696 0.95321 0.92976 0.88382 0.94580 0.92241 0.89800 0.86274 0.86033 0.91536 0.92733 0.91656 0.90098 0.94717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.81 37.16 0.33 -2.13 16 2 C 0.09 1.80 2.13 -67.71 -0.14 1.66 16 3 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 4 C 0.03 0.76 4.11 -27.88 -0.11 0.65 16 5 C -0.52 -14.28 8.28 -34.43 -0.29 -14.57 16 6 H 0.05 1.46 7.05 -52.49 -0.37 1.09 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 9 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.54 -9.73 4.58 -226.48 -1.04 -10.76 16 14 C 0.06 0.97 5.16 -3.77 -0.02 0.96 16 15 C 0.04 0.55 4.15 -3.77 -0.02 0.53 16 16 N -0.52 -6.29 4.73 -226.49 -1.07 -7.36 16 17 C 0.01 0.08 5.59 -3.82 -0.02 0.06 16 18 C 0.41 4.63 2.82 37.16 0.10 4.74 16 19 F -0.18 -2.29 13.99 2.25 0.03 -2.26 16 20 F -0.19 -2.08 17.32 2.25 0.04 -2.04 16 21 F -0.18 -2.32 13.75 2.25 0.03 -2.29 16 22 C 0.06 0.71 2.21 -67.65 -0.15 0.56 16 23 H 0.08 1.06 5.43 -51.93 -0.28 0.78 16 24 C -0.15 -1.38 8.93 37.16 0.33 -1.05 16 25 C 0.06 0.93 4.65 -3.76 -0.02 0.91 16 26 H 0.03 0.50 6.39 -51.93 -0.33 0.16 16 27 H 0.07 1.36 6.85 -51.93 -0.36 1.00 16 28 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.01 0.40 6.14 -51.93 -0.32 0.08 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.10 1.91 5.98 -51.93 -0.31 1.60 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.93 5.49 -51.93 -0.29 0.64 16 35 H 0.08 1.07 7.91 -51.93 -0.41 0.66 16 36 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.12 0.90 5.47 -51.93 -0.28 0.61 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.05 0.43 6.03 -51.93 -0.31 0.12 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.08 1.16 6.22 -51.93 -0.32 0.84 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 323.22 15.07 4.87 4.87 Total: -1.00 -29.68 323.22 -7.62 -37.30 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -6.10 Total: -1.93 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -0.10 Total: -6.12 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: -1.37 Total: -43.99 kcal Atomic # 9 Polarization: -6.70 SS G_CDS: 0.10 Total: -6.60 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.68 -7.62 -37.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351228282.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.601 kcal (2) G-P(sol) polarization free energy of solvation -29.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds