Wall clock time and date at job start Tue Mar 31 2020 07:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47438 * 2 1 4 4 C 1.53001 * 109.46969 * 240.00137 * 2 1 3 5 5 C 1.50710 * 109.46983 * 61.90895 * 4 2 1 6 6 H 1.07993 * 120.00034 * 5.17565 * 5 4 2 7 7 C 1.37879 * 119.99957 * 185.17569 * 5 4 2 8 8 N 1.31520 * 119.99658 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99946 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47336 * 59.99776 * 9 7 5 11 11 H 1.48496 * 109.47130 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46918 * 299.99761 * 9 7 5 13 13 N 1.46898 * 109.47363 * 120.00697 * 2 1 3 14 14 C 1.46951 * 111.00243 * 173.58047 * 13 2 1 15 15 C 1.53056 * 109.36638 * 183.18416 * 14 13 2 16 16 N 1.46949 * 109.36025 * 301.59440 * 15 14 13 17 17 C 1.46907 * 110.99632 * 183.18491 * 16 15 14 18 18 C 1.53000 * 109.47285 * 312.90394 * 17 16 15 19 19 F 1.39903 * 109.46922 * 66.79719 * 18 17 16 20 20 F 1.39901 * 109.46916 * 186.79732 * 18 17 16 21 21 F 1.39899 * 109.47048 * 306.79992 * 18 17 16 22 22 C 1.46955 * 110.88271 * 59.32501 * 16 15 14 23 23 H 1.09001 * 109.49293 * 60.63865 * 22 16 15 24 24 C 1.52999 * 109.50969 * 180.69571 * 22 16 15 25 25 C 1.46962 * 110.99443 * 297.37457 * 13 2 1 26 26 H 1.09004 * 109.47016 * 299.99321 * 1 2 3 27 27 H 1.08997 * 109.47572 * 59.99804 * 1 2 3 28 28 H 1.09000 * 109.47438 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47485 * 181.90811 * 4 2 1 30 30 H 1.09003 * 109.47472 * 301.91011 * 4 2 1 31 31 H 0.97003 * 119.99161 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.48886 * 303.15484 * 14 13 2 33 33 H 1.09001 * 109.49315 * 63.21664 * 14 13 2 34 34 H 1.08994 * 109.48704 * 61.56615 * 15 14 13 35 35 H 1.09004 * 109.48848 * 181.62956 * 15 14 13 36 36 H 1.08999 * 109.46751 * 72.90749 * 17 16 15 37 37 H 1.09002 * 109.47085 * 192.90348 * 17 16 15 38 38 H 1.08999 * 109.47127 * 179.97438 * 24 22 16 39 39 H 1.08998 * 109.46873 * 299.94136 * 24 22 16 40 40 H 1.09001 * 109.47028 * 59.94772 * 24 22 16 41 41 H 1.09004 * 109.48928 * 56.84811 * 25 13 2 42 42 H 1.08994 * 109.49368 * 296.78013 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5766 0.0161 -2.4793 6 1 1.0502 0.9539 -2.3805 7 6 1.8247 -0.5067 -3.7308 8 7 2.4653 -1.6490 -3.8511 9 14 1.2510 0.4076 -5.2554 10 1 1.8844 1.7500 -5.2953 11 1 1.6376 -0.3590 -6.4670 12 1 -0.2259 0.5581 -5.2158 13 7 2.0197 -0.6926 1.1993 14 6 3.4806 -0.8465 1.1590 15 6 3.9413 -1.6403 2.3839 16 7 3.5220 -0.9387 3.6051 17 6 4.0117 -1.6313 4.8045 18 6 3.7228 -3.1288 4.6824 19 9 4.4923 -3.6692 3.6465 20 9 4.0467 -3.7657 5.8852 21 9 2.3653 -3.3206 4.4039 22 6 2.0611 -0.7848 3.6455 23 1 1.5915 -1.7684 3.6390 24 6 1.6612 -0.0366 4.9187 25 6 1.6004 0.0090 2.4207 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.1294 -0.7510 -1.2324 30 1 1.6489 -1.7386 -1.2666 31 1 2.6401 -2.0165 -4.7316 32 1 3.7652 -1.3797 0.2519 33 1 3.9502 0.1371 1.1655 34 1 3.4931 -2.6336 2.3630 35 1 5.0275 -1.7308 2.3711 36 1 5.0862 -1.4752 4.9009 37 1 3.5064 -1.2344 5.6850 38 1 0.5776 0.0776 4.9478 39 1 1.9900 -0.6019 5.7907 40 1 2.1309 0.9470 4.9248 41 1 0.5142 0.0995 2.4334 42 1 2.0486 1.0024 2.4415 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351228282.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:41 Heat of formation + Delta-G solvation = -156.057028 kcal Electronic energy + Delta-G solvation = -25704.731018 eV Core-core repulsion = 21690.213787 eV Total energy + Delta-G solvation = -4014.517231 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -51.22961 -48.69711 -48.66560 -40.72660 -37.92385 -35.10372 -33.58511 -33.07191 -30.33057 -29.03828 -27.76054 -26.61866 -24.88551 -23.67728 -23.32592 -21.14813 -20.71558 -19.62867 -19.52304 -18.70315 -18.08164 -17.04336 -16.73494 -16.48841 -16.28444 -15.91461 -15.58530 -15.38487 -15.15998 -15.01606 -14.92421 -14.82705 -14.70346 -14.32905 -14.18279 -13.74764 -13.53966 -13.22388 -13.07520 -12.97920 -12.87243 -12.78350 -12.59741 -12.48883 -12.23044 -12.05891 -11.83438 -11.67470 -11.54345 -11.12626 -10.94487 -10.50187 -9.61019 -9.15996 -8.17229 -6.26819 1.40729 1.43378 1.51038 1.79559 2.41411 2.47245 2.84017 3.01447 3.03187 3.16427 3.26462 3.78836 3.90302 3.96287 4.21702 4.27083 4.36073 4.41770 4.44122 4.47694 4.57698 4.67205 4.71150 4.78996 4.83380 4.94440 5.02439 5.07867 5.12240 5.22463 5.34859 5.42460 5.48981 5.68773 5.72973 5.78787 5.83886 6.12568 6.33902 6.38144 6.88624 7.41197 8.94706 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.026920 B = 0.003890 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.850684 B = 7195.908083 C = 7793.736303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.097 3.903 3 H 0.021 0.979 4 C 0.040 3.960 5 C -0.532 4.532 6 H 0.061 0.939 7 C 0.002 3.998 8 N -0.933 5.933 9 Si 0.961 3.039 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.266 1.266 13 N -0.547 5.547 14 C 0.059 3.941 15 C 0.050 3.950 16 N -0.516 5.516 17 C 0.015 3.985 18 C 0.410 3.590 19 F -0.192 7.192 20 F -0.188 7.188 21 F -0.191 7.191 22 C 0.058 3.942 23 H 0.063 0.937 24 C -0.140 4.140 25 C 0.061 3.939 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.043 0.957 29 H -0.008 1.008 30 H -0.009 1.009 31 H 0.262 0.738 32 H 0.063 0.937 33 H 0.032 0.968 34 H 0.044 0.956 35 H 0.099 0.901 36 H 0.144 0.856 37 H 0.149 0.851 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.747 1.794 21.938 22.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.011 4.011 3 H 0.039 0.961 4 C 0.003 3.997 5 C -0.571 4.571 6 H 0.080 0.920 7 C -0.196 4.196 8 N -0.573 5.573 9 Si 0.786 3.214 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.191 1.191 13 N -0.272 5.272 14 C -0.070 4.070 15 C -0.077 4.077 16 N -0.239 5.239 17 C -0.116 4.116 18 C 0.353 3.647 19 F -0.174 7.174 20 F -0.169 7.169 21 F -0.173 7.173 22 C -0.050 4.050 23 H 0.080 0.920 24 C -0.198 4.198 25 C -0.066 4.066 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.011 0.989 30 H 0.010 0.990 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.117 0.883 36 H 0.162 0.838 37 H 0.167 0.833 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.785 1.668 21.784 21.921 hybrid contribution -0.066 -0.369 -1.453 1.500 sum 1.719 1.300 20.332 20.446 Atomic orbital electron populations 1.21634 0.93795 1.01214 1.01099 1.21525 0.96161 0.94098 0.89317 0.96142 1.19019 0.94364 0.94748 0.91586 1.21546 1.36531 1.07123 0.91868 0.92040 1.25910 0.95327 0.95762 1.02557 1.70112 1.42464 1.20377 1.24366 0.85559 0.79108 0.78604 0.78134 1.19258 1.21093 1.19121 1.62205 1.11275 1.51248 1.02516 1.22096 0.88098 0.98924 0.97849 1.22585 1.01237 0.95519 0.88403 1.62411 1.13169 1.47244 1.01044 1.24111 1.07433 0.82175 0.97833 1.22721 0.73707 0.94990 0.73254 1.93165 1.75730 1.88926 1.59563 1.93173 1.92418 1.85199 1.46146 1.93109 1.34371 1.96295 1.93503 1.22215 0.86408 1.00071 0.96292 0.91952 1.21880 1.02525 1.00811 0.94534 1.22275 1.00915 0.95118 0.88331 0.91565 0.92700 0.93786 0.98943 0.99008 0.92943 0.91832 0.94947 0.93805 0.88309 0.83832 0.83325 0.90605 0.90740 0.91124 0.89315 0.94690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.57 8.81 71.98 0.63 -3.93 16 2 C 0.10 4.10 2.13 44.92 0.10 4.19 16 3 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 4 C 0.04 2.15 4.11 29.85 0.12 2.27 16 5 C -0.53 -30.11 8.28 25.60 0.21 -29.90 16 6 H 0.06 3.32 7.05 -2.91 -0.02 3.30 16 7 C 0.00 0.12 5.46 84.65 0.46 0.59 16 8 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 9 Si 0.96 44.40 29.54 68.60 2.03 46.43 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 13 N -0.55 -20.12 4.58 -870.46 -3.98 -24.11 16 14 C 0.06 2.10 5.16 86.31 0.45 2.55 16 15 C 0.05 1.41 4.15 86.31 0.36 1.77 16 16 N -0.52 -11.50 4.73 -870.47 -4.12 -15.62 16 17 C 0.01 0.22 5.59 86.30 0.48 0.71 16 18 C 0.41 8.46 2.82 71.98 0.20 8.67 16 19 F -0.19 -4.77 13.99 44.97 0.63 -4.14 16 20 F -0.19 -3.69 17.32 44.97 0.78 -2.91 16 21 F -0.19 -4.74 13.75 44.97 0.62 -4.13 16 22 C 0.06 1.33 2.21 44.92 0.10 1.43 16 23 H 0.06 1.65 5.43 -2.39 -0.01 1.64 16 24 C -0.14 -2.12 8.93 71.98 0.64 -1.47 16 25 C 0.06 1.74 4.65 86.31 0.40 2.15 16 26 H 0.07 2.03 6.39 -2.39 -0.02 2.01 16 27 H 0.05 2.20 6.85 -2.39 -0.02 2.19 16 28 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 29 H -0.01 -0.44 6.14 -2.39 -0.01 -0.45 16 30 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 31 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 32 H 0.06 2.68 5.98 -2.38 -0.01 2.66 16 33 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.04 1.39 5.49 -2.39 -0.01 1.37 16 35 H 0.10 2.46 7.91 -2.38 -0.02 2.44 16 36 H 0.14 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.15 1.53 5.47 -2.39 -0.01 1.52 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.07 0.85 6.03 -2.39 -0.01 0.83 16 40 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.09 2.35 6.22 -2.38 -0.01 2.34 16 42 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -66.37 323.22 1.42 -64.95 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: 1.03 Total: 7.57 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 4.16 Total: -10.99 kcal Atomic # 7 Polarization: -88.96 SS G_CDS: -7.82 Total: -96.78 kcal Atomic # 9 Polarization: -13.20 SS G_CDS: 2.03 Total: -11.18 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -66.37 1.42 -64.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351228282.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.106 kcal (2) G-P(sol) polarization free energy of solvation -66.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds